Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g107 ATGGCAGGAACCGGACCTCTGACGCAGGACTGGGAACCGGTGGTGATCCGGAAGAAGCCTCTCAACGCCGCCGCCAAGAAGGACGAGAAAGCCGTCAACGCCGCCCGTCGCATGGGCGCCGAGATCGAGACTGTCAAGAAGTCAAGTGCAGGGACAAACAGAGCTGCCTCTAGCAGCACTTCTTTGAACACAAGGAAGCTTGATGAAGAAACAGAGAATCTTACTCATGAACGTGTACCAACCGAACTGAAGAAAAGCATCATGCAAGCTCGACTGGATAAGAAACTCACCCAGGCTCAACTAGCTCAAATGATTAATGAGAAGCCCCAAGTGATACAAGAGTATGAGTCAGGAAAAGCCATTCCAAATCAACAGATAATCACCAAACTGGAAAGGGCTCTTGGTGTGAAGCTGCGAGGAAAGAAGTGA 429 50.35 MAGTGPLTQDWEPVVIRKKPLNAAAKKDEKAVNAARRMGAEIETVKKSSAGTNRAASSSTSLNTRKLDEETENLTHERVPTELKKSIMQARLDKKLTQAQLAQMINEKPQVIQEYESGKAIPNQQIITKLERALGVKLRGKK* 143
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1367749 1370643 - Vvi19g107 Vvi19g107 781606

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g107 142 MobiDBLite consensus disorder prediction 43 77 - -
Vvi19g107 142 CDD HTH_XRE 87 138 IPR001387 -
Vvi19g107 142 SUPERFAMILY lambda repressor-like DNA-binding domains 81 138 IPR010982 GO:0003677
Vvi19g107 142 ProSiteProfiles Cro/C1-type HTH domain profile. 87 141 IPR001387 -
Vvi19g107 142 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 1 142 - -
Vvi19g107 142 Pfam Multiprotein bridging factor 1 9 79 IPR013729 -
Vvi19g107 142 MobiDBLite consensus disorder prediction 46 64 - -
Vvi19g107 142 Pfam Helix-turn-helix 87 138 IPR001387 -
Vvi19g107 142 Gene3D - 71 142 IPR010982 GO:0003677
Vvi19g107 142 PANTHER MULTIPROTEIN BRIDGING FACTOR 1B 1 142 - -
Vvi19g107 142 SMART mbf_short4 86 141 IPR001387 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g107 K03627 MBF1; putative transcription factor - vvi:100854999 274.248
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi12g158 Vvi19g107 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g107 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000864 4 3 1 3 2 3 5 2 2 2 2 3 5 2 1 4 3 5 5 2 2 2 2 3 3 2 2 7 4 2 88
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14393 PF08523 MBF1 3.20E-22 No_clan Vvi TR