Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1070 ATGGCTGGCCAAATTCCATTCGGTGTTGTGGAGCACATTTTGACCAAGTTGGGGTCCAAGGCGTTTCAAGAAATTGGATCCATGTATGGTATTCCAAAGGAGATGACCAAGCTCAATGGGAAACTGGGCACCATCAAGGCTGTGCTTTTGGATGCCGAGGAGAAGCAGCAGCAGCAGAGCAATCGTGCAGTCAAAGATTGGGTCCGGAGGTTCAGAGGTGTTGTTTATGACGCAGATGACTTGCTGGATGACTATGCAACCCATTATCTTCAGCGAGGAGGATTGGCAAGGCAGGTCAGTGACTTCTTCTCATCTGAAAATCAAGTTGCTTTTCGTTTTAAGATGAGTCATAGACTCGAGGATATCAAAGAAAGGCTAGATGATGTTGCAAACGACATCCCCATGTTAAATCTCATTCCACGGGACATAGTACTACACACACGGGAAGAGAATAGTGGGAGAGAAACCCACTCATTCTTGTTGCCGTCTGAAATTGTAGGAAGAGAAGAAAACAAAGAGGAGATAATAAGGAAGCTGTCATCTAACAATGAAGAAATTCTTTCCGTTGTTGCCATTGTTGGCTTTGGGGGATTGGGTAAGACCACCCTCACTCAATTGGTATACAATGACGAAAGAGTAAAACATTTTGAGCATAAGACATGGGTTTGCATTTCTGATGATTCTGGTGATGGTCTTGACGTCAAACTGTGGGTCAAAAAGATTTTAAAATCTATGGGAGTTCAGGATGTGGAGAGTCTGACCTTGGATGGTTTGAAAGACAAGCTTCACGAAAAAATAAGTCAAAAGAAGTACTTGTTAGTACTTGATGATGTTTGGAACGAAAATCCTGGAAAATGGTATGAAGTGAAAAAATTGTTGATGGTTGGTGCTAGAGGTAGTAAAATTATAGTAACCACCCGAAAACTTAATGTTGCATCCATTATGGAAGATAAGTCTCCCGTTAGTTTGAAAGGTCTAGGAGAAAAGGAGTCTTGGGCTTTATTTTCAAAATTTGCATTTACAGAACAGGAGATTTTGAAGCCAGAAATTGTAGAAATTGGAGAAGAAATTGCAAAAATGTGCAAGGGAGTTCCTCTCATTATTAAGACTTTAGCAATGATATTGCATTCTAAAAGAGAACTGGGATTGTGGTTGTCTATTAGAAACAATATTAAAAATTTGTTATCACTTGGAGATGAAAATGAGAATGTTCTACGGGTGTTGAAACTAAGGTGGTTAAGGAATCACAAAATTGGTAGCTTGAGTGAGTTGAAAAGCCTGAACCATCTAAGAGGAGGGTTATGCATACGAAATCTTCAAAACGTGAGGGATATTGAACTGGTATCCAAGGGAGAAATTTTGGAACGAAAACAATATCTTCAGTCCTTGAGATTGGAATGGAAACGGTCGGGCCAAGATGGGGGGGATGAGGGTGATAAGTCAATGATGGAAGGCCTTCAACCACACCCACACCTAAAGGATATCTTTATAGAAGGTTATGGAGGTACGGAGTTTCCAAGTTGGATGATGAATGATGGGTTGGGTTCCCTGCTTCCCTGCCTAATTAAAATTGAAATTTCGAGATGTTCAAGATGCAAAATTCTGCCACCCTTTTCTCAACTCCCTTCTCTCAAGTCTTTGAAGCTTCAAAACATGAAAGAAGTGGTGGAGTTGAATGAGGATTCATCAGCAACGCCACTCTTCCCATCTCTTGAATCGCTCGGACTCTTTAACATGCCAAAGTTGAAGGAATTGTGGAGGATGGACTTACTAGCAGAGGAAGTACTGAGGCAGTTAATGTTTGTCTCTGCTTCTTCTTCATTGAAGTCTCTGGGTATATGGGAGATTGATGGTATGATATCTCTCCCAGAGGAGCCGCTTCAATATGTTTCCACTCTCGAAACCCTCTACATTGTCAAGTGCTCTGGTTTGGCAACATTACTACACTGGATGGGCAGCCTTTCCTCACTTACGGAACTTATTATTTACAACTGCTCGGAATTGACATCACTGCCAGAAGAGATCTATTCCCTTGAAAAACTGCAGACATTTTATTTCTGTGATTATCCACACCTAGAGGAAAGATACAACAAGGAAACAGGTGAAGACCGGGCCAAGATTGATCATCTCCCACGTATTTATTTCGAAAAGGATTTTCCTATGAGATATAAGGTCCGAAATCCCTAA 2187 41.2 MAGQIPFGVVEHILTKLGSKAFQEIGSMYGIPKEMTKLNGKLGTIKAVLLDAEEKQQQQSNRAVKDWVRRFRGVVYDADDLLDDYATHYLQRGGLARQVSDFFSSENQVAFRFKMSHRLEDIKERLDDVANDIPMLNLIPRDIVLHTREENSGRETHSFLLPSEIVGREENKEEIIRKLSSNNEEILSVVAIVGFGGLGKTTLTQLVYNDERVKHFEHKTWVCISDDSGDGLDVKLWVKKILKSMGVQDVESLTLDGLKDKLHEKISQKKYLLVLDDVWNENPGKWYEVKKLLMVGARGSKIIVTTRKLNVASIMEDKSPVSLKGLGEKESWALFSKFAFTEQEILKPEIVEIGEEIAKMCKGVPLIIKTLAMILHSKRELGLWLSIRNNIKNLLSLGDENENVLRVLKLRWLRNHKIGSLSELKSLNHLRGGLCIRNLQNVRDIELVSKGEILERKQYLQSLRLEWKRSGQDGGDEGDKSMMEGLQPHPHLKDIFIEGYGGTEFPSWMMNDGLGSLLPCLIKIEISRCSRCKILPPFSQLPSLKSLKLQNMKEVVELNEDSSATPLFPSLESLGLFNMPKLKELWRMDLLAEEVLRQLMFVSASSSLKSLGIWEIDGMISLPEEPLQYVSTLETLYIVKCSGLATLLHWMGSLSSLTELIIYNCSELTSLPEEIYSLEKLQTFYFCDYPHLEERYNKETGEDRAKIDHLPRIYFEKDFPMRYKVRNP* 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 21634749 21638325 + Vvi19g1070 Vvi19g1070 782569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1070 728 Gene3D - 9 120 - -
Vvi19g1070 728 PANTHER DISEASE RESISTANCE PROTEIN RP 392 675 IPR044974 GO:0006952
Vvi19g1070 728 PANTHER DISEASE RESISTANCE PROTEIN RP 43 412 IPR044974 GO:0006952
Vvi19g1070 728 PRINTS Disease resistance protein signature 189 204 - -
Vvi19g1070 728 PRINTS Disease resistance protein signature 265 279 - -
Vvi19g1070 728 PRINTS Disease resistance protein signature 361 375 - -
Vvi19g1070 728 PRINTS Disease resistance protein signature 539 555 - -
Vvi19g1070 728 SUPERFAMILY L domain-like 385 693 - -
Vvi19g1070 728 PANTHER DISEASE RESISTANCE RPP13-LIKE PROTEIN 1-RELATED 43 412 - -
Vvi19g1070 728 PANTHER DISEASE RESISTANCE RPP13-LIKE PROTEIN 1-RELATED 392 675 - -
Vvi19g1070 728 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 411 IPR027417 -
Vvi19g1070 728 Pfam NB-ARC domain 168 409 IPR002182 GO:0043531
Vvi19g1070 728 Gene3D - 325 413 IPR042197 -
Vvi19g1070 728 Gene3D Ribonuclease Inhibitor 477 694 IPR032675 -
Vvi19g1070 728 Gene3D - 145 321 IPR027417 -
Vvi19g1070 728 Pfam Rx N-terminal domain 9 104 IPR041118 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1070 - - vvi:100264283 749.199