Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1073 ATGGCTGTGGAAGCTTGTGTTAATCCGAAAATGTTTAATAACGAGGTAGACGACGACGATGATGACGAGAGGCCATTAGTTTTCAAAAGGAGTAGTAACAGTTCAGCTTCAAATAATAATTCCAGGCTTAAAATTCAATCCATTTCGGGTTCAAAACGGCCTGATGATGCCCATTCCAATGGGCAAAAGAAGGACAAGGGAATGGCCCCGCCCATGCCTGCCAAGGGATCGGGGCGGGTGACGGGGTCAGTTAAGTCGCCGCCGCAGCAGGTGGGCAGGGGGGTAGTGGTGGGTAATTCAAAAGTGGAGGCGCAAAATAAAAAGGCTGAATTGGATAGCGATTCTGAGGATGATAAACCACTTAGTGTTAGGCTTTCTTCTGGGTTGCCAAAGGGGAAGGGGAGCTCTAACAATGTCGGTTTGGGAAGAGGGGGGGTTGGTGGTGTCAAGAAGGAAGAGGATGATGATGACGATGATAAAATTCCATTGTCATCGAAGTTCCAACTGAAATCGGATGAGAAGAAGCCTCTGCCTTTGAAAGTTAATCAAAATGGTGGAACTGATAAGAGGGATAAGTCTCCCACAGTGCTAAATAAGAAGAGACCTCTAGATGGGGTTAATTCTTCTTTGGGTCAGTCTTCGCTGGTTAAAAAGCCAAAGATTTCTGGTCAATCTGCACAGCCATTCAAAGTTACGCATGCAACTGCAAAAGCAGAACCGAAGGTGGAAGATGATGATGATGACGATATGCCTATTTCCCAGAGAATGAAGAAATCAGGAGCTAGCTCAGGCAACAAACCAGTGCCAGCAAAGCAAAAGGTAACAAAAGTTGTTTCTTCTACTTCGTTTAAGAAAACCAAAGACATCAAGTCCAAGAAGATGGAGAAAAATTCGAAATACTCTAAGTCGACAAAAGTGCCACCTAGCTCTGGTGAAGGGCAGAAGTGGACTACCTTGGTTCATAATGGTGTCATTTTTCCGCCTCCGTACAAGCCTCATGGGGTGAAGATGCTCTACAAGGGGAAACCAGTTGACTTGACTCCTGAACAAGAGGAGGTTGCCACAATGTTTGCTGTGATGTTAGACACGGACTACATGCAAAAAGAGAAATTCAAGGAGAATTTCATGGCTGATTGGAGAAAAATACTTGGAAAGAACCATGTGATTCAGAGACTGGATGATTGTGATTTCACTCCTATATACGAATGGCATCAGGAGGAAAAGGAAAAGAAAAAACAAATGAGTACTGAAGAGAAGAAGACCTTAAAAGAAGAGAAATTGAAACTAGAGGAGAAATATATGTGGGCTATTGTTGATGGTGTCAAAGAGAAGGTTGGAAACTTTAGAGTTGAACCCCCTGGGTTGTTCCGAGGCCGTGGGGAGCATCCAAAGATGGGAAAGCTGAAAAGACGGATTCATCCAAGTGACATTACTATTAATATTGGAAAGAACTCTCAAATTCCTGAATGTCCTATACCTGGTGAAAGCTGGAAAGAAGTAAAGCACGACAATACTGTTACATGGTTAGCTTTCTGGAATGATCCAATCAACCCAAAGGAATTCAAGTATGTATTTTTGGCGGCTAGCAGTTCCTTGAAGGGTCAAAGCGACAAGGAGAAATATGAGAAAGCAAGGAAACTAAAGAACTATATAAAAGACATCAGAGCAACATACACTAAGGATTTTGTAAGTAAAGATATTACAAAGCGGCAGATAGCAGTTGCCACCTATCTTATTGATAAACTAGCTCTAAGGGCAGGCAATGAGAAGGATGATGATGAGGCGGATACTGTTGGTTGCTGTACCTTGAAAGTAGAAAATGTAATACCTGAACCGCCAAATTCCTTGCAGTTTGATTTCCTCGGTAAAGATTCAATTAGATATGAAAAGACAGTTGAAGTTGAGCTTCCTGTATACAAGGCAATTGAACAGTTCCGAGTGGGGAAAAGTGGTAGTGATGATCTTTTTGACAAGCTGGATACCAGTAAACTAAATGCTCATCTAAAGGAACTAATGCCGGGCCTCACAGCAAAGGTTTTCCGTACATATAATGCATCTATCACGTTGGATGAGATGTTGAATAAAGACACCAAGGAAGGAGATGTTGCACAGAAAGTTGTAGTTTATCAGCATGCAAACAAGGAGGTTGCTATCATTTGTAACCATCAACGGACTATCTCGAAGTCTCATACAGCACAAATGACAAGGTTGACTGAGAAGATAGATGAAATGAAGGGTGTTCTTAATGGGCTGAAAACAGATTTAGCTAGAGCCAAGAAGGGGAAGCCCCCTTTGAAGGATGCTGATGGGAAGCGAAGGAACCTGACCCCTGAAGCATTAGAGAGGAAGATAGCTCAAACAAATGCAAAGATTGAGAAAATGGAGCGGGACAAGGATACGAAAGAGGATCTAAAAACTGTTGCATTGGGTACCTCAAAGATCAACTACCTTGACCCCAGGATCTCAGTTGCATGGTGTAAACGACAGGAAGTTCCCATTGAGAAGGTATTCAATAAGTCTCTCCTGGCAAAATTTGCCTGGGCAATGGACGTTCCTCCGGATTTCAGATTCTGA 2574 42.77 MAVEACVNPKMFNNEVDDDDDDERPLVFKRSSNSSASNNNSRLKIQSISGSKRPDDAHSNGQKKDKGMAPPMPAKGSGRVTGSVKSPPQQVGRGVVVGNSKVEAQNKKAELDSDSEDDKPLSVRLSSGLPKGKGSSNNVGLGRGGVGGVKKEEDDDDDDKIPLSSKFQLKSDEKKPLPLKVNQNGGTDKRDKSPTVLNKKRPLDGVNSSLGQSSLVKKPKISGQSAQPFKVTHATAKAEPKVEDDDDDDMPISQRMKKSGASSGNKPVPAKQKVTKVVSSTSFKKTKDIKSKKMEKNSKYSKSTKVPPSSGEGQKWTTLVHNGVIFPPPYKPHGVKMLYKGKPVDLTPEQEEVATMFAVMLDTDYMQKEKFKENFMADWRKILGKNHVIQRLDDCDFTPIYEWHQEEKEKKKQMSTEEKKTLKEEKLKLEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIHPSDITINIGKNSQIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARKLKNYIKDIRATYTKDFVSKDITKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVIPEPPNSLQFDFLGKDSIRYEKTVEVELPVYKAIEQFRVGKSGSDDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEMLNKDTKEGDVAQKVVVYQHANKEVAIICNHQRTISKSHTAQMTRLTEKIDEMKGVLNGLKTDLARAKKGKPPLKDADGKRRNLTPEALERKIAQTNAKIEKMERDKDTKEDLKTVALGTSKINYLDPRISVAWCKRQEVPIEKVFNKSLLAKFAWAMDVPPDFRF* 858
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 21696837 21712562 + Vvi19g1073 Vvi19g1073 782572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1073 857 Pfam Eukaryotic DNA topoisomerase I, catalytic core 529 753 IPR013500 GO:0003677|GO:0003917|GO:0006265
Vvi19g1073 857 MobiDBLite consensus disorder prediction 283 300 - -
Vvi19g1073 857 SUPERFAMILY DNA breaking-rejoining enzymes 529 854 IPR011010 GO:0003677
Vvi19g1073 857 Gene3D - 678 857 IPR014727 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Vvi19g1073 857 PANTHER DNA TOPOISOMERASE I 105 857 - -
Vvi19g1073 857 CDD Topo_IB_C 535 728 IPR013500 GO:0003677|GO:0003917|GO:0006265
Vvi19g1073 857 PANTHER DNA TOPOISOMERASE I 105 857 - -
Vvi19g1073 857 Gene3D - 331 414 IPR013034 GO:0003917|GO:0006265
Vvi19g1073 857 SUPERFAMILY Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment 313 528 IPR036202 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Vvi19g1073 857 Gene3D DNA Topoisomerase I, domain 2 310 526 IPR013030 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Vvi19g1073 857 Coils Coil 777 804 - -
Vvi19g1073 857 MobiDBLite consensus disorder prediction 105 121 - -
Vvi19g1073 857 MobiDBLite consensus disorder prediction 205 231 - -
Vvi19g1073 857 Pfam C-terminal topoisomerase domain 789 857 IPR025834 -
Vvi19g1073 857 Gene3D Topoisomerase I; Chain A, domain 3 529 677 IPR014711 GO:0003677|GO:0003917|GO:0006265
Vvi19g1073 857 MobiDBLite consensus disorder prediction 147 177 - -
Vvi19g1073 857 ProSitePatterns Eukaryotic DNA topoisomerase I active site. 803 821 IPR018521 GO:0003677|GO:0003917|GO:0006265
Vvi19g1073 857 SMART topeu 455 830 IPR013499 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Vvi19g1073 857 PRINTS Eukaryotic DNA topoisomerase I signature 455 464 IPR001631 GO:0003677|GO:0003917|GO:0006265
Vvi19g1073 857 PRINTS Eukaryotic DNA topoisomerase I signature 571 590 IPR001631 GO:0003677|GO:0003917|GO:0006265
Vvi19g1073 857 PRINTS Eukaryotic DNA topoisomerase I signature 594 608 IPR001631 GO:0003677|GO:0003917|GO:0006265
Vvi19g1073 857 PRINTS Eukaryotic DNA topoisomerase I signature 616 632 IPR001631 GO:0003677|GO:0003917|GO:0006265
Vvi19g1073 857 PRINTS Eukaryotic DNA topoisomerase I signature 674 688 IPR001631 GO:0003677|GO:0003917|GO:0006265
Vvi19g1073 857 PRINTS Eukaryotic DNA topoisomerase I signature 810 821 IPR001631 GO:0003677|GO:0003917|GO:0006265
Vvi19g1073 857 Coils Coil 405 432 - -
Vvi19g1073 857 Pfam Eukaryotic DNA topoisomerase I, DNA binding fragment 315 526 IPR008336 GO:0003677|GO:0003917|GO:0006265
Vvi19g1073 857 MobiDBLite consensus disorder prediction 1 314 - -
Vvi19g1073 857 MobiDBLite consensus disorder prediction 29 55 - -
Vvi19g1073 857 MobiDBLite consensus disorder prediction 256 282 - -
Vvi19g1073 857 Coils Coil 734 754 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1073 K03163 - vvi:100246144 1570.06