Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1073 ATGGCTGTGGAAGCTTGTGTTAATCCGAAAATGTTTAATAACGAGGTAGACGACGACGATGATGACGAGAGGCCATTAGTTTTCAAAAGGAGTAGTAACAGTTCAGCTTCAAATAATAATTCCAGGCTTAAAATTCAATCCATTTCGGGTTCAAAACGGCCTGATGATGCCCATTCCAATGGGCAAAAGAAGGACAAGGGAATGGCCCCGCCCATGCCTGCCAAGGGATCGGGGCGGGTGACGGGGTCAGTTAAGTCGCCGCCGCAGCAGGTGGGCAGGGGGGTAGTGGTGGGTAATTCAAAAGTGGAGGCGCAAAATAAAAAGGCTGAATTGGATAGCGATTCTGAGGATGATAAACCACTTAGTGTTAGGCTTTCTTCTGGGTTGCCAAAGGGGAAGGGGAGCTCTAACAATGTCGGTTTGGGAAGAGGGGGGGTTGGTGGTGTCAAGAAGGAAGAGGATGATGATGACGATGATAAAATTCCATTGTCATCGAAGTTCCAACTGAAATCGGATGAGAAGAAGCCTCTGCCTTTGAAAGTTAATCAAAATGGTGGAACTGATAAGAGGGATAAGTCTCCCACAGTGCTAAATAAGAAGAGACCTCTAGATGGGGTTAATTCTTCTTTGGGTCAGTCTTCGCTGGTTAAAAAGCCAAAGATTTCTGGTCAATCTGCACAGCCATTCAAAGTTACGCATGCAACTGCAAAAGCAGAACCGAAGGTGGAAGATGATGATGATGACGATATGCCTATTTCCCAGAGAATGAAGAAATCAGGAGCTAGCTCAGGCAACAAACCAGTGCCAGCAAAGCAAAAGGTAACAAAAGTTGTTTCTTCTACTTCGTTTAAGAAAACCAAAGACATCAAGTCCAAGAAGATGGAGAAAAATTCGAAATACTCTAAGTCGACAAAAGTGCCACCTAGCTCTGGTGAAGGGCAGAAGTGGACTACCTTGGTTCATAATGGTGTCATTTTTCCGCCTCCGTACAAGCCTCATGGGGTGAAGATGCTCTACAAGGGGAAACCAGTTGACTTGACTCCTGAACAAGAGGAGGTTGCCACAATGTTTGCTGTGATGTTAGACACGGACTACATGCAAAAAGAGAAATTCAAGGAGAATTTCATGGCTGATTGGAGAAAAATACTTGGAAAGAACCATGTGATTCAGAGACTGGATGATTGTGATTTCACTCCTATATACGAATGGCATCAGGAGGAAAAGGAAAAGAAAAAACAAATGAGTACTGAAGAGAAGAAGACCTTAAAAGAAGAGAAATTGAAACTAGAGGAGAAATATATGTGGGCTATTGTTGATGGTGTCAAAGAGAAGGTTGGAAACTTTAGAGTTGAACCCCCTGGGTTGTTCCGAGGCCGTGGGGAGCATCCAAAGATGGGAAAGCTGAAAAGACGGATTCATCCAAGTGACATTACTATTAATATTGGAAAGAACTCTCAAATTCCTGAATGTCCTATACCTGGTGAAAGCTGGAAAGAAGTAAAGCACGACAATACTGTTACATGGTTAGCTTTCTGGAATGATCCAATCAACCCAAAGGAATTCAAGTATGTATTTTTGGCGGCTAGCAGTTCCTTGAAGGGTCAAAGCGACAAGGAGAAATATGAGAAAGCAAGGAAACTAAAGAACTATATAAAAGACATCAGAGCAACATACACTAAGGATTTTGTAAGTAAAGATATTACAAAGCGGCAGATAGCAGTTGCCACCTATCTTATTGATAAACTAGCTCTAAGGGCAGGCAATGAGAAGGATGATGATGAGGCGGATACTGTTGGTTGCTGTACCTTGAAAGTAGAAAATGTAATACCTGAACCGCCAAATTCCTTGCAGTTTGATTTCCTCGGTAAAGATTCAATTAGATATGAAAAGACAGTTGAAGTTGAGCTTCCTGTATACAAGGCAATTGAACAGTTCCGAGTGGGGAAAAGTGGTAGTGATGATCTTTTTGACAAGCTGGATACCAGTAAACTAAATGCTCATCTAAAGGAACTAATGCCGGGCCTCACAGCAAAGGTTTTCCGTACATATAATGCATCTATCACGTTGGATGAGATGTTGAATAAAGACACCAAGGAAGGAGATGTTGCACAGAAAGTTGTAGTTTATCAGCATGCAAACAAGGAGGTTGCTATCATTTGTAACCATCAACGGACTATCTCGAAGTCTCATACAGCACAAATGACAAGGTTGACTGAGAAGATAGATGAAATGAAGGGTGTTCTTAATGGGCTGAAAACAGATTTAGCTAGAGCCAAGAAGGGGAAGCCCCCTTTGAAGGATGCTGATGGGAAGCGAAGGAACCTGACCCCTGAAGCATTAGAGAGGAAGATAGCTCAAACAAATGCAAAGATTGAGAAAATGGAGCGGGACAAGGATACGAAAGAGGATCTAAAAACTGTTGCATTGGGTACCTCAAAGATCAACTACCTTGACCCCAGGATCTCAGTTGCATGGTGTAAACGACAGGAAGTTCCCATTGAGAAGGTATTCAATAAGTCTCTCCTGGCAAAATTTGCCTGGGCAATGGACGTTCCTCCGGATTTCAGATTCTGA 2574 42.77 MAVEACVNPKMFNNEVDDDDDDERPLVFKRSSNSSASNNNSRLKIQSISGSKRPDDAHSNGQKKDKGMAPPMPAKGSGRVTGSVKSPPQQVGRGVVVGNSKVEAQNKKAELDSDSEDDKPLSVRLSSGLPKGKGSSNNVGLGRGGVGGVKKEEDDDDDDKIPLSSKFQLKSDEKKPLPLKVNQNGGTDKRDKSPTVLNKKRPLDGVNSSLGQSSLVKKPKISGQSAQPFKVTHATAKAEPKVEDDDDDDMPISQRMKKSGASSGNKPVPAKQKVTKVVSSTSFKKTKDIKSKKMEKNSKYSKSTKVPPSSGEGQKWTTLVHNGVIFPPPYKPHGVKMLYKGKPVDLTPEQEEVATMFAVMLDTDYMQKEKFKENFMADWRKILGKNHVIQRLDDCDFTPIYEWHQEEKEKKKQMSTEEKKTLKEEKLKLEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIHPSDITINIGKNSQIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARKLKNYIKDIRATYTKDFVSKDITKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVIPEPPNSLQFDFLGKDSIRYEKTVEVELPVYKAIEQFRVGKSGSDDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEMLNKDTKEGDVAQKVVVYQHANKEVAIICNHQRTISKSHTAQMTRLTEKIDEMKGVLNGLKTDLARAKKGKPPLKDADGKRRNLTPEALERKIAQTNAKIEKMERDKDTKEDLKTVALGTSKINYLDPRISVAWCKRQEVPIEKVFNKSLLAKFAWAMDVPPDFRF* 858
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 21696837 21712562 + Vvi19g1073 Vvi19g1073 782572

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1073 857 Pfam Eukaryotic DNA topoisomerase I, catalytic core 529 753 IPR013500 GO:0003677|GO:0003917|GO:0006265
Vvi19g1073 857 MobiDBLite consensus disorder prediction 283 300 - -
Vvi19g1073 857 SUPERFAMILY DNA breaking-rejoining enzymes 529 854 IPR011010 GO:0003677
Vvi19g1073 857 Gene3D - 678 857 IPR014727 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Vvi19g1073 857 PANTHER DNA TOPOISOMERASE I 105 857 - -
Vvi19g1073 857 CDD Topo_IB_C 535 728 IPR013500 GO:0003677|GO:0003917|GO:0006265
Vvi19g1073 857 PANTHER DNA TOPOISOMERASE I 105 857 - -
Vvi19g1073 857 Gene3D - 331 414 IPR013034 GO:0003917|GO:0006265
Vvi19g1073 857 SUPERFAMILY Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment 313 528 IPR036202 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Vvi19g1073 857 Gene3D DNA Topoisomerase I, domain 2 310 526 IPR013030 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Vvi19g1073 857 Coils Coil 777 804 - -
Vvi19g1073 857 MobiDBLite consensus disorder prediction 105 121 - -
Vvi19g1073 857 MobiDBLite consensus disorder prediction 205 231 - -
Vvi19g1073 857 Pfam C-terminal topoisomerase domain 789 857 IPR025834 -
Vvi19g1073 857 Gene3D Topoisomerase I; Chain A, domain 3 529 677 IPR014711 GO:0003677|GO:0003917|GO:0006265
Vvi19g1073 857 MobiDBLite consensus disorder prediction 147 177 - -
Vvi19g1073 857 ProSitePatterns Eukaryotic DNA topoisomerase I active site. 803 821 IPR018521 GO:0003677|GO:0003917|GO:0006265
Vvi19g1073 857 SMART topeu 455 830 IPR013499 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Vvi19g1073 857 PRINTS Eukaryotic DNA topoisomerase I signature 455 464 IPR001631 GO:0003677|GO:0003917|GO:0006265
Vvi19g1073 857 PRINTS Eukaryotic DNA topoisomerase I signature 571 590 IPR001631 GO:0003677|GO:0003917|GO:0006265
Vvi19g1073 857 PRINTS Eukaryotic DNA topoisomerase I signature 594 608 IPR001631 GO:0003677|GO:0003917|GO:0006265
Vvi19g1073 857 PRINTS Eukaryotic DNA topoisomerase I signature 616 632 IPR001631 GO:0003677|GO:0003917|GO:0006265
Vvi19g1073 857 PRINTS Eukaryotic DNA topoisomerase I signature 674 688 IPR001631 GO:0003677|GO:0003917|GO:0006265
Vvi19g1073 857 PRINTS Eukaryotic DNA topoisomerase I signature 810 821 IPR001631 GO:0003677|GO:0003917|GO:0006265
Vvi19g1073 857 Coils Coil 405 432 - -
Vvi19g1073 857 Pfam Eukaryotic DNA topoisomerase I, DNA binding fragment 315 526 IPR008336 GO:0003677|GO:0003917|GO:0006265
Vvi19g1073 857 MobiDBLite consensus disorder prediction 1 314 - -
Vvi19g1073 857 MobiDBLite consensus disorder prediction 29 55 - -
Vvi19g1073 857 MobiDBLite consensus disorder prediction 256 282 - -
Vvi19g1073 857 Coils Coil 734 754 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1073 K03163 TOP1; DNA topoisomerase I [EC:5.6.2.1] - vvi:100246144 1570.06
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1073 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .