Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1078 ATGATTGCTGGAGGAGCAATGAAAGGAAAGAAAACTCCCCAAGAATGGCAGAAAAACATAGAACTGTTGCAGAGCTATCCATCAAAAGTTCCAGGTATGGAGAATGATTTGTTTCGAGTTTTAGCATTGAGTTATGACAACTTGAGCAAAGCCAACGTCAAATCATGTTTCCTATATTGCTCCATGTTCCCGGAAGATTGGGAAATTTCTTGCAAGCAGCTCATAGAACTATGGATAGGGGAGGGGTTTCTCGATGAATGGCATCACATACATGATGCACGTACTAATGGAGAGGAAATTATTGAACAGCTAAATGCTTCATGTCTGTTGGAGAGTGGTCAATATGAAAAGCATGTAAAAATGCATGATGTGATTCGGGACATGGCTTTGTGGTTGGCTTGTGAAAATGGGGAGAAGAAGAACAAATGCGTGATAAAAGAGCGTGGAAGATGGATTGAAGGTCACGAAATTGCAGAGTGGAAGGAGACCCAAAGAATGTCGTTGTGGGATAATAGTATTGAAGATTCCACTGAACCACCGGATTTTCGAAATCTCGAGACTTTGCTTGCATCAGGTGAGTCGATGAAGTCATTTCCAAGCCAATTCTTCAGACACATGTCTGCCATAAGAGTTCTGGACTTGTCAAATTCTGAATTGATGGTGTTACCTGCAGAGATTGGTAACCTAAAAACTCTGCATTATCTTAATTTGTCAAAAACAGAAATAGAGAGTCTCCCAATGAAGCTCAAAAATTTGACAAAACTAAGGTGCTTGATATTGGATGATATGGAAAAACTTGAAGCAATTCCATCTCAGTTGATATCAAGCCTTTCATCTTTGCAGTTGTTCAGTCTTTATGCTTCCATAGGTTGCAATGGAGACTGGGGATTCCTCTTAGAGGAGCTAGCGTGCTTGAAACATGTGAGTGACATATCTATCCCTCTAAGAAGTGTCCTTCACACCCAAAAGTCAGTCGACTCCCACAAGTTAGGAAGGAGCATAAGAAGGCTAAGCCTACAAGACTGCACTGGCATGACCACAATGGAACTATCCCCTTACCTACAGATTCTTCAAATATGGAGATGTTTTGATTTGGCAGATGTGAAAATCAATCTGGGAAGGGGACAAGAATTCTCCAAACTTTCCGAAGTGGAGATAATTAGGTGTCCAAAATTGCTGCACTTGACATGTCTTGCTTTTGCTCCAAACCTTTTGTCTCTCCGTGTGGAATACTGCGAGTCAATGCAAGAAGTGATCACAGAAGATGAAGAGATTGGAATTTCAGAAGTTGAACAATGTTCAGATGCATTCTCAGTACTCACAACTCTCAGTTTATCTTATTTATCAAATCTAAGGAGTATATGTGGAGGAGCTCTGTCATTTCCTTCCCTAAGAGAGATCACTGTGAAACACTGTCCAAGGCTAAGGAAGCTGACATTTGATTCCAACACCAACTGTTTGCGTAAAATCGAGGGAGAACAACACTGGTGGGATGGGTTGGATTGGGAAGATCAAACCATTAAGCAGAAACTCACTCAATATTTTGTGCCTAAATGA 1557 40.91 MIAGGAMKGKKTPQEWQKNIELLQSYPSKVPGMENDLFRVLALSYDNLSKANVKSCFLYCSMFPEDWEISCKQLIELWIGEGFLDEWHHIHDARTNGEEIIEQLNASCLLESGQYEKHVKMHDVIRDMALWLACENGEKKNKCVIKERGRWIEGHEIAEWKETQRMSLWDNSIEDSTEPPDFRNLETLLASGESMKSFPSQFFRHMSAIRVLDLSNSELMVLPAEIGNLKTLHYLNLSKTEIESLPMKLKNLTKLRCLILDDMEKLEAIPSQLISSLSSLQLFSLYASIGCNGDWGFLLEELACLKHVSDISIPLRSVLHTQKSVDSHKLGRSIRRLSLQDCTGMTTMELSPYLQILQIWRCFDLADVKINLGRGQEFSKLSEVEIIRCPKLLHLTCLAFAPNLLSLRVEYCESMQEVITEDEEIGISEVEQCSDAFSVLTTLSLSYLSNLRSICGGALSFPSLREITVKHCPRLRKLTFDSNTNCLRKIEGEQHWWDGLDWEDQTIKQKLTQYFVPK* 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 21801775 21803332 - Vvi19g1078 Vvi19g1078 782577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1078 518 PANTHER DISEASE RESISTANCE PROTEIN RP 6 318 IPR044974 GO:0006952
Vvi19g1078 518 PANTHER DISEASE RESISTANCE PROTEIN RP 343 508 IPR044974 GO:0006952
Vvi19g1078 518 SUPERFAMILY L domain-like 120 485 - -
Vvi19g1078 518 Gene3D - 40 130 IPR036388 -
Vvi19g1078 518 PANTHER OS12G0491200 PROTEIN 343 508 - -
Vvi19g1078 518 PANTHER OS12G0491200 PROTEIN 6 318 - -
Vvi19g1078 518 Gene3D Ribonuclease Inhibitor 154 372 IPR032675 -
Vvi19g1078 518 Gene3D Ribonuclease Inhibitor 394 492 IPR032675 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1078 - K13459 vvi:100264978 1028.85