Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1080 ATGGGGGGTGTGGGCAAAACCACCCTCTTGAACAGGATCAACAATGAGTTCCTCAAATCCAGGGTTGGGTTTGACGCAGTGATTTGGGTGACTGTGTCCAGACCAGCAAATGTGGAGAAGGTTCAGCAAGTTCTTTTCAATAAATTGGAGATTCCTAGTAACAACTGGGAAGGTAGAAGTGAGGATGAAAGGAAAGAAGCAATATTCAATGTCTTGAAGATGAAGAAAATTGTCGCCTTATTAGATGATATATGGGAGCCTCTTGATCTCTTTGCAGTGGGGATACCTCCTGTAAATGATGGAAATAAGTCCAAGGTGGTATTTACAACCCGATTTTCAACTGTGTGCCGAGATATGGGAGCTAAGGGCATTGAAGTGAAGTGCTTAGCATGGGAGGAAGCATTTGCTCTGTTTCAGGCATATGTAGGAGAAGACACTATATATTCTCATCCACATATACCAAAGCTGGCGGAGACTGCTGCCAAAGAGTGCGACGGCCTCCCACTTGCCCTCATCACCATTGGACGAGCAATGGCAGGAACAAAAACGCCTGAGGAATGGGAGAAAAAAATACAAATGTTGAAGAATTATCCAGCAAAGTTTCCAGGTATGGAGAATCATTTGTTTCCACGTTTAGCGTTCAGTTATGATAGCCTACAAGATGAAACAATCAAATCGTGTTTCCTGTATTGCTCTTTATTTCTGGAGGATTATAATATCAATTGTGATGAACTTATACAACTATGGATTGGAGAGGGGTTTCTAGATGAATACGGTGACATAAAAGAAGCAAGAAATGGAGGAGAAGACATTATTGCAAGTTTAAATCATGCATGCCTATTGGAGATTACTGTTACTGATAATATATGGACCCAAGCAAGATGTAGATGTGTGAAGATGCATGATGTCATCCGTGATATGGCTTTGTTGTTAGCTTGTCAAAATGGGAATAAGAAGCAAAACAAATTTGTTGTTGTAGATAAAGGTGAATTGGTTAATGCTCAAGAAGTTGAAAAATGGAAGGGAACACAAAGGTTATCATTAGTCAGTGCTAGTTTTGAAGAACTGATCATGGAACCACCATCTTTTTCTAATCTTCAGACTTTGTTGGTATTTGTTAATTGGACGTTACCATTATCATTTCCAAGTGGATTCTTCTCATATATGCCTATTATAACAGTTCTGGACTTTTCAGACCATGATAATTTAATTGATTTGCCTATAGAAATTGGCAAATTATTTACTTTACAATATCTTAATTTGTCTGGTACAAGGATAAGAACGTTACCAATGGAACTCAGGAATTTTAAAAAACTGAGGTGTTTGTTATTGGATGACTTGTTTGAGTTTGAAATTCCATCTCAAATCATATCAGGTCTTTCATCCTTGCAGTTGTTTAGTGTTATGGATTCCGATGAAGCTACCCGCGGAGATTGTAGAGCCATATTAGATGAGTTAGAGGGGTTGAAATGCATGGGAGAAGTATCCATTAGTCTTGATAGTGTTCTTGCCATCCAAACATTATTGAACTCCCACAAGTTACAAAGGTGCTTGAAACGCTTAGACGTACACAACTGCTGGGATATGGACTTACTTCAACTGTTTTTTCCTTATTTGGAAGTGTTTGAGGTCAGGAATTGTTCAAATTTGGAAGATGTGACGTTCAATTTGGAAAAGGAAGTCCATTCAACATTCCCAAGGCATCAATACTTATACCATCTTGCTCATGTAAGGATAGTATCCTGTGAAAATTTGATGAAATTGACATGTCTTATTTATGCTCCAAATCTTAAGTCTCTATTCATTGAGAACTGTGACTCTTTGGAAGAAGTGATAGAAGTTGACGAGTCTGGAGTTTCAGAAATTGAATCTGACTTGGGCCTGTTTTCAAGACTTACTCATCTCCATTTGCGGATTCTACAAAAGCTAAGGAGTATATGCGGATGGAGCTTACTCTTTCCTTCCTTAAAGGTGATTCATGTGGTTAGATGTCCGAATTTGAGGAAACTACCTTTTGATTCCAACATCGGGATTAGTAAGAATTTAGAGGAAATCGAGGGAGAAGGAGAATGGTGGGACGAGTTAGAGTGGGAGGATCAAACCATTATGCACAACCTCGGTCCATATTTCAAGCCTCTATAG 2142 38.89 MGGVGKTTLLNRINNEFLKSRVGFDAVIWVTVSRPANVEKVQQVLFNKLEIPSNNWEGRSEDERKEAIFNVLKMKKIVALLDDIWEPLDLFAVGIPPVNDGNKSKVVFTTRFSTVCRDMGAKGIEVKCLAWEEAFALFQAYVGEDTIYSHPHIPKLAETAAKECDGLPLALITIGRAMAGTKTPEEWEKKIQMLKNYPAKFPGMENHLFPRLAFSYDSLQDETIKSCFLYCSLFLEDYNINCDELIQLWIGEGFLDEYGDIKEARNGGEDIIASLNHACLLEITVTDNIWTQARCRCVKMHDVIRDMALLLACQNGNKKQNKFVVVDKGELVNAQEVEKWKGTQRLSLVSASFEELIMEPPSFSNLQTLLVFVNWTLPLSFPSGFFSYMPIITVLDFSDHDNLIDLPIEIGKLFTLQYLNLSGTRIRTLPMELRNFKKLRCLLLDDLFEFEIPSQIISGLSSLQLFSVMDSDEATRGDCRAILDELEGLKCMGEVSISLDSVLAIQTLLNSHKLQRCLKRLDVHNCWDMDLLQLFFPYLEVFEVRNCSNLEDVTFNLEKEVHSTFPRHQYLYHLAHVRIVSCENLMKLTCLIYAPNLKSLFIENCDSLEEVIEVDESGVSEIESDLGLFSRLTHLHLRILQKLRSICGWSLLFPSLKVIHVVRCPNLRKLPFDSNIGISKNLEEIEGEGEWWDELEWEDQTIMHNLGPYFKPL* 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 21839337 21841479 - Vvi19g1080 Vvi19g1080 782579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1080 713 Gene3D - 129 215 IPR042197 -
Vvi19g1080 713 Pfam NB-ARC domain 1 217 IPR002182 GO:0043531
Vvi19g1080 713 PANTHER DISEASE RESISTANCE PROTEIN RP 1 657 IPR044974 GO:0006952
Vvi19g1080 713 Gene3D - 216 309 IPR036388 -
Vvi19g1080 713 PANTHER DISEASE RESISTANCE PROTEIN RFL1-RELATED 1 657 - -
Vvi19g1080 713 Gene3D Ribonuclease Inhibitor 327 614 IPR032675 -
Vvi19g1080 713 Gene3D Ribonuclease Inhibitor 615 689 IPR032675 -
Vvi19g1080 713 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 231 IPR027417 -
Vvi19g1080 713 Gene3D - 1 128 IPR027417 -
Vvi19g1080 713 PRINTS Disease resistance protein signature 71 85 - -
Vvi19g1080 713 PRINTS Disease resistance protein signature 164 178 - -
Vvi19g1080 713 PRINTS Disease resistance protein signature 592 608 - -
Vvi19g1080 713 SUPERFAMILY L domain-like 293 688 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1080 - K13459 vvi:100258255 1300.42