Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1083 ATGCATGATGTTATTCGCGATATGGCGCTATGGTTAGCATCTGAGAATGGGAAGAAGAAGAACAAATTTGTGGTAAAAGACCAAGTTGGATTGATTAGAGCACATGAAGTTGAGAAATGGAATGAGACACAGAGGATATCATTATGGGAAAGTAGAATTGAAGAACTTAGGGAACCGCCATGTTTCCCCAATATTGAGACCTTCTCTGCATCAGGTAAGTGCATCAAGTCGTTTCCAAGTGGTTTCTTTGCATACATGCCTATCATAAGAGTTTTGGACTTGTCAAACAATTATGAACTTATTGAATTACCTGTGGAGATCGGCAACTTAGTTAATTTGCAATACCTTAATTTGTCAAGAACAAGTATAGAAAACATACCAGTGGAGCTCAAAAATTTGAAAAATCTCAAGTACTTGATATTGGATAATATGAATTCACTTCAACCACTCCCATCACAAATGCTATCAGTCCTTTCCTCTCTGCAATTGTTCAGTATGTTCAACTCACCCTATAAGGGAGATCATAGAACCCTTTTAGAGGATTTAGAGCAGTTGGAATACATCAATGATATATCCATTGACCTTACAACTGTCTTCTCCGCCCAAGCCTTATTCAACTCCCACAAGTTGCAAAGCTCCACAAGACGGCTACGATTATTTAACTGCAAGAATCTGAACTTGGTCCAACTATCCCCTTACATAGAGATGCTTCATATATCCTTCTGTCACGCATTTAAAGATGTGCAAATCAGTTTGGAAAAGGAGGTGCTGCATTCAAAATTCCCAAGGCACGGGCATTGCTTGTACCACCTTTGCCATGTAAATATATCTTGGTGTAGTAAATTGTTGAACTTGACCTGGCTTATTTATGCTCCAAACCTTAAGTTTCTATCGATTGATGACTGTGGGTCATTGGAAGAAGTGGTTGAAATCGAAAAGAGCGAAGTTTCAGAACTTGAACTGAATTTCGACCTTTTTTCAAGACTGGTATCTCTCACTTTGATTAATCTACCAAAACTAAGGAGTATATGTAGATGGCGGCAGTCCTTTCCTTCCTTGAGAGAAATCACTGTGCTTGGGTGTCCAAGAATAAGGAAGCTGCCATTTGATTCCGACACCGGAACTAGTAAGAATTTAGAGAAAATCATTGGAGAACAAGAATGGTGGGATGGCTTGGAGTGGGAGGACAAAACCATTATGCACAGTCTCACTCCATATTTTCGAACAACGCAAAGCTCAAAAAGACTAGAGTTCCCATTCATCCCATTACAGGACAGGCATATTTCAAGATTCCCAAGATGTATTTCAAGATTCTTACAAGCTCCTTTTGGCCACATGGATGTTTGA 1347 39.35 MHDVIRDMALWLASENGKKKNKFVVKDQVGLIRAHEVEKWNETQRISLWESRIEELREPPCFPNIETFSASGKCIKSFPSGFFAYMPIIRVLDLSNNYELIELPVEIGNLVNLQYLNLSRTSIENIPVELKNLKNLKYLILDNMNSLQPLPSQMLSVLSSLQLFSMFNSPYKGDHRTLLEDLEQLEYINDISIDLTTVFSAQALFNSHKLQSSTRRLRLFNCKNLNLVQLSPYIEMLHISFCHAFKDVQISLEKEVLHSKFPRHGHCLYHLCHVNISWCSKLLNLTWLIYAPNLKFLSIDDCGSLEEVVEIEKSEVSELELNFDLFSRLVSLTLINLPKLRSICRWRQSFPSLREITVLGCPRIRKLPFDSDTGTSKNLEKIIGEQEWWDGLEWEDKTIMHSLTPYFRTTQSSKRLEFPFIPLQDRHISRFPRCISRFLQAPFGHMDV* 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 21874070 21876155 + Vvi19g1083 Vvi19g1083 782582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1083 448 Gene3D Ribonuclease Inhibitor 12 254 IPR032675 -
Vvi19g1083 448 ProSiteProfiles Leucine-rich repeat profile. 112 134 IPR001611 GO:0005515
Vvi19g1083 448 PANTHER OS12G0491200 PROTEIN 1 169 - -
Vvi19g1083 448 PANTHER OS12G0491200 PROTEIN 177 399 - -
Vvi19g1083 448 SUPERFAMILY L domain-like 1 383 - -
Vvi19g1083 448 Gene3D Ribonuclease Inhibitor 257 381 IPR032675 -
Vvi19g1083 448 Pfam Leucine rich repeat 75 123 IPR001611 GO:0005515
Vvi19g1083 448 PANTHER DISEASE RESISTANCE PROTEIN RP 1 169 IPR044974 GO:0006952
Vvi19g1083 448 PANTHER DISEASE RESISTANCE PROTEIN RP 177 399 IPR044974 GO:0006952
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1083 - K13459 vvi:100246240 870.922