Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1086 ATGTCAGTGTTGATAGTGACGAGTTTGGGGGACATAGTGGTGGATTTGTACACAGATCGCTGTCCTCTCACCTCCAAGAACTTCTTAAAGCTCTGCAAGATCAAATATTACAATGGTTGTCTGTTTCACATGGTTCAGAAGGATTTTACGGCACAGACTGGTGACCCGACTGCAACGGGGACTGGTGGTGATTCTATCTACAAATTTCTATATGGTGATCAAGCTCGCTTTTTCAATGATGAGGTCCATCTGGATTTAAAGCATTCAAAAACAGGAACTGTTGCCATGGCTAGTGCAGGAGAGAATCTTAATGCTTCTCAGTTCTATTTCACGCTGCGTGATGATCTAGACTACCTGGATGGAAAGCATACTGTTTTTGGTGAGGTTGCAGAAGGGCTTGAGACACTAACGAGGATAAATGAAGCTTATGTGGATGATAAAGGGAGACCATATAAAAATATCCGAATCAAACACACTTATATATTGGATGATCCTTTTGGTGATCCTTCCCAGCTCACTGAGTTAATTCCTGACGCTTCTCCAGAAGGAAAGCCAAAGGATGAGGTTGATGATGATGTGCGACTTGAAGATGATTGGGTTCCCCTGGATGAGCAATTAGATACATCGGAGCTTGAGGAGCTTATCCGTTCAAAAGAGGCACATTCTCGTGCAGTTGTACTTGAGAGTATTGGGGACATTCCTGATGCTGAGATAAAGCCTCCTGACAATGTGCTATTTGTTTGTAAACTGAATCCAGTTACTGAAGATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTGATATCGGCGGAAATTATCCGTGATTTCAAGACTGGAGACAGTTTATGCTATGCTTTCATTGAATTTGAGACCAATGAGGCATGTGAACAAGCATATTTTAAGATGGATAATGCGTTAATTGATGACCGGAGAATACATGTGGATTTCAGTCAAAGTGTTTCAAAACTGTGGTCCCAATACAGGCGCAGAGATCACCAAACGGGCAAAGGAACAGGTTGCTTCAAATGTGGTGCAGTCGACCACATTGCCAAGGATTGTACTGGGAGCCCCACCAAGCAACAACAACCTCCAAAATACATCTTAAAAGACAACAACACTCAGCATGGTGGAGATAATAACTCTAGGTATGAAATGGTTTTTGATGAAGACACCTCAGAAAGTCCAAAACGAGAAAAGAGACGCCAGGACCATGGACCTGAAGATCAAATTGAGAAAGAAAAACTGAACAGGCGAGGTTCAGAAGACTGGAAACGTAGGGACCATGACAAGAAAGACTCTGATGATAGGCATAGGCAGAGTGACAAGGGCCAAGAAAGTAGAGCAAGTCGCTTGAGTGGGAGCAGAAGAGACCCATATCATCATGAAGAGAGAATTGACAGAGAAAAACATAGAGAGAGGCAAGACGAAGGAAAAAGAGAGAGAGATGAGCGGGACTATAGAAAGAGAAATGCAGATAGTGATAGCCATAGAGAGAGGAGGGACGGGAGAGACGAACGGCACCACAGAAAGAGAAATGCAGATGGTGATAGGCATGTAGATAGAAGGGATGTTGGGGATTATAGAAAGAGAGATACAGATGATGATGACCATGGAGATGGAAGGGATGGCAGAGATTACAGAAAGAGAAGCGCTGACAATGATGGGCGTGGGGATAGGAGGGATGACAGAGATCACAGAAAGACAAAAGCTGATGAAGACAGAAGGGACAAGAGGGACATGAGGGACGAGCCAAGCTACAGAAAGAGAAGTGCTGATGGTGATGGCAATGGAGGAAGGAGGGAAGAGCGAGGTCATAAAAGGCATAGCACGGAAAGCAATGATGATCGTGATAGAAGGCACCGAGGTGACCGGAGGGAACCTGAGGAGGACCCCTGA 1902 44.37 MSVLIVTSLGDIVVDLYTDRCPLTSKNFLKLCKIKYYNGCLFHMVQKDFTAQTGDPTATGTGGDSIYKFLYGDQARFFNDEVHLDLKHSKTGTVAMASAGENLNASQFYFTLRDDLDYLDGKHTVFGEVAEGLETLTRINEAYVDDKGRPYKNIRIKHTYILDDPFGDPSQLTELIPDASPEGKPKDEVDDDVRLEDDWVPLDEQLDTSELEELIRSKEAHSRAVVLESIGDIPDAEIKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVISAEIIRDFKTGDSLCYAFIEFETNEACEQAYFKMDNALIDDRRIHVDFSQSVSKLWSQYRRRDHQTGKGTGCFKCGAVDHIAKDCTGSPTKQQQPPKYILKDNNTQHGGDNNSRYEMVFDEDTSESPKREKRRQDHGPEDQIEKEKLNRRGSEDWKRRDHDKKDSDDRHRQSDKGQESRASRLSGSRRDPYHHEERIDREKHRERQDEGKRERDERDYRKRNADSDSHRERRDGRDERHHRKRNADGDRHVDRRDVGDYRKRDTDDDDHGDGRDGRDYRKRSADNDGRGDRRDDRDHRKTKADEDRRDKRDMRDEPSYRKRSADGDGNGGRREERGHKRHSTESNDDRDRRHRGDRREPEEDP* 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 21920856 21934724 + Vvi19g1086 Vvi19g1086 782585

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1086 633 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 161 IPR002130 GO:0000413|GO:0003755
Vvi19g1086 633 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 512 IPR035542 -
Vvi19g1086 633 ProSiteProfiles Zinc finger CCHC-type profile. 342 355 IPR001878 GO:0003676|GO:0008270
Vvi19g1086 633 SMART rrm1_1 244 317 IPR000504 GO:0003723
Vvi19g1086 633 SMART c2hcfinal6 341 357 IPR001878 GO:0003676|GO:0008270
Vvi19g1086 633 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4 159 IPR002130 GO:0000413|GO:0003755
Vvi19g1086 633 SUPERFAMILY RNA-binding domain, RBD 229 338 IPR035979 GO:0003676
Vvi19g1086 633 SUPERFAMILY Retrovirus zinc finger-like domains 327 363 IPR036875 GO:0003676|GO:0008270
Vvi19g1086 633 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 321 IPR000504 GO:0003723
Vvi19g1086 633 CDD cyclophilin_RRM 4 169 IPR035538 -
Vvi19g1086 633 Gene3D - 1 173 IPR029000 -
Vvi19g1086 633 MobiDBLite consensus disorder prediction 384 633 - -
Vvi19g1086 633 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Vvi19g1086 633 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Vvi19g1086 633 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Vvi19g1086 633 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
Vvi19g1086 633 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 315 IPR000504 GO:0003723
Vvi19g1086 633 SUPERFAMILY Cyclophilin-like 1 177 IPR029000 -
Vvi19g1086 633 Pfam Zinc knuckle 341 356 IPR001878 GO:0003676|GO:0008270
Vvi19g1086 633 Gene3D - 235 344 IPR012677 -
Vvi19g1086 633 CDD RRM_PPIL4 240 322 - -
Vvi19g1086 633 MobiDBLite consensus disorder prediction 356 633 - -
Vvi19g1086 633 MobiDBLite consensus disorder prediction 356 382 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1086 K12735 PPIL4; peptidyl-prolyl cis-trans isomerase-like 4 [EC:5.2.1.8] - vvi:100266806 1091.64
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1086 . . . . . . Bma08g00813 . . . . . . . . Cpe04g00858 . Bhi05g02021 . . . . . . . . . . . . . . . . . . Csa07g01188 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00875 Cme01g01530
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009344 0 6 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33