Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1087 ATGGCTGGTCTGTTGCCTGGCGATCCGTCACATCATGGAATGTATGAAGGTGGGTCTTACAAATTTCCTCAGGACAAACCAGAGGAAGGTGGCCGTTGGTACTTATCTAGGAAGGAAATTGAAGAAAATTCCCCTTCCAAGCGTGATGGAATTGATTTGAAAAAAGAGACTTACCTACGCAAGTCGTACTGTACATTTCTACAGGATTTGGGCATGAGGCTCAAAGTGCCCCAGGTAACAATTGCTACAGCAATCATATTTTGTCACCGTTTCTTCCTTCGTCAATCCCATGCAAAGAATGACAGAAGGACAATTGCAACAGTGTGTATGTTTCTTGCGGGGAAGGTTGAAGAAACTCCCCGTCCATTAAAAGATGTTATCCTTGTTTCTTATGAAATCATTAATAAAAAGGATCCTGCTGCAGTTCAAAGGATAAAGCAGAAGGAGGTATATGAACAGCAGAAGGAATTAATTTTACTTGGAGAGAGGGTTGTACTTGCTACACTTGGTTTTGATCTTAATGTGCACCATCCATATAAACCCCTTGTAGAGGCAATAAAGAAATTCAAGGTTGCTCAAAATGCCCTTGCTCAAGTTGCTTGGAATTTTGTCAATGATGGACTGCGGACATCTCTTTGCTTGCAATTTAAGCCCCACCACATTGCGGCAGGTGCAATTTTCCTTGCTGCCAAGTTCCTCAAAGTAAAGCTCCCATCAGATGGTGAGAAGGTCTGGTGGCAGGAGTTCGATGTCACCCCACGCCAATTAGAGGAGGTCAGTAATCAAATGTTGGAGCTCTACGAACAAAATCGAGTGCCACCTTCTCAAGGCAGTGAAGTTGAAGGAAGTGTTGGAGGTGGGGCTGCTCATCGGGCCACATCAAAAGCTCCAGCTGCTAATGAAGAATATCCATATGTTGATAATATTAGTGGACCTTCAAGAACCAGCCAAAATCGAAGTAATGACTATGGAAGCACGGAGATGAGAAGTGCTTCAGACCACAAGGCTGATGGAGAATCAAGTGATTATCATGAACATGAACCATCACTTTACCAGGAGAACTTGGGGGAAGGTCAAAATGCGTCAAGGCATGGGTCAGAGGGGCCTGGTGAAGATGATCAAGAAAGGACTGCTATTAAAAAGATTGATAAAGACAAGGTAAAGGCTGCACTGGAGAAAAGAAGGAAAACTCGTGGTGACATGACTAGAAAAACAGACCTGATGGATGAGGATGATCTTATCGAGAGAGAACTGGAAGATGGTATCGAGCCAGAACATGAGAGCTCACACCATGGGAAGCATCAAGATGATGAAGATGGACACCACCAAGGACTGAAACCCCTGTCATCACGAGGATCAGATTTGGAGAATGTGGAGGAAGGTGAGGTATCTGCATTTGATGACGCTGACCGAGCATTTCGATCACCCAAGTCAAGCAGTCGAAAGAGGAAACCGGGAAGCTCACCAGAAAAACTCTCAGATGGAAAGCAGCGGCATGATTATATGCCTGGCTCCCACCACCATAACCATCATGATTTCCCAGAAGATCGGAACAGACTCGGCCGGCTTGGTTACTCAGAGAGGGATCACAAAAGGCATGCACAGGAAAATCATGTCTGA 1620 44.88 MAGLLPGDPSHHGMYEGGSYKFPQDKPEEGGRWYLSRKEIEENSPSKRDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVILVSYEIINKKDPAAVQRIKQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEEVSNQMLELYEQNRVPPSQGSEVEGSVGGGAAHRATSKAPAANEEYPYVDNISGPSRTSQNRSNDYGSTEMRSASDHKADGESSDYHEHEPSLYQENLGEGQNASRHGSEGPGEDDQERTAIKKIDKDKVKAALEKRRKTRGDMTRKTDLMDEDDLIERELEDGIEPEHESSHHGKHQDDEDGHHQGLKPLSSRGSDLENVEEGEVSAFDDADRAFRSPKSSSRKRKPGSSPEKLSDGKQRHDYMPGSHHHNHHDFPEDRNRLGRLGYSERDHKRHAQENHV* 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 21934771 21952939 - Vvi19g1087 Vvi19g1087 782586

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1087 539 MobiDBLite consensus disorder prediction 1 30 - -
Vvi19g1087 539 Gene3D - 24 173 - -
Vvi19g1087 539 MobiDBLite consensus disorder prediction 453 476 - -
Vvi19g1087 539 MobiDBLite consensus disorder prediction 271 539 - -
Vvi19g1087 539 CDD CYCLIN 174 235 IPR013763 -
Vvi19g1087 539 MobiDBLite consensus disorder prediction 328 351 - -
Vvi19g1087 539 MobiDBLite consensus disorder prediction 483 539 - -
Vvi19g1087 539 MobiDBLite consensus disorder prediction 309 327 - -
Vvi19g1087 539 CDD CYCLIN 59 130 IPR013763 -
Vvi19g1087 539 Gene3D - 175 279 - -
Vvi19g1087 539 SUPERFAMILY Cyclin-like 31 175 IPR036915 -
Vvi19g1087 539 PIRSF Cyclin_L 31 538 - -
Vvi19g1087 539 Pfam Cyclin, N-terminal domain 34 174 IPR006671 -
Vvi19g1087 539 SMART cyclin_7 65 167 IPR013763 -
Vvi19g1087 539 SMART cyclin_7 180 265 IPR013763 -
Vvi19g1087 539 MobiDBLite consensus disorder prediction 366 411 - -
Vvi19g1087 539 MobiDBLite consensus disorder prediction 419 445 - -
Vvi19g1087 539 PANTHER CYCLIN 306 377 IPR043198 GO:0006357|GO:0016538
Vvi19g1087 539 PANTHER CYCLIN 378 448 IPR043198 GO:0006357|GO:0016538
Vvi19g1087 539 PANTHER CYCLIN 1 303 IPR043198 GO:0006357|GO:0016538
Vvi19g1087 539 SUPERFAMILY Cyclin-like 176 272 IPR036915 -
Vvi19g1087 539 PANTHER - 378 448 - -
Vvi19g1087 539 PANTHER - 1 303 - -
Vvi19g1087 539 PANTHER - 306 377 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1087 K15188 CCNT; cyclin T - vvi:100265067 1014.99
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1087 . . . . Bpe07g00462 . . . . . . . . . . . Cpe16g00717 . . . . . . . Cla02g01817 Cam02g1923 Cec02g1948 . . Cmu02g1852 . . . . . . . . Cme11g01601 . . . . . . . Bma12g00592 . . . . . . . . . Bhi10g00958 . . . Hepe08g0633 . . . . . . . . . . Csa06g01165 Chy11g01027 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000905 2 5 2 4 2 3 4 3 3 2 3 2 4 1 2 4 3 3 3 1 2 2 3 3 3 2 2 5 2 1 81