Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1088 ATGTACAGAGAGGGGCTGCACGAAGAAGCCCTAGGGTTCTATACGGAGGCGCTGGCCATGGCCAAGACCAGGGCCCAGAAGATCGCGCTCCACAGTAATCGAGCTGCTTGTTATCTCAAACTCCATGATTTCGACAAGGCAGCAAAAGAATGCACCTCGGTGCTTGAGCTTGATCACAAGCACACTGGAGCTTTGATGCTGCGGGCTCAGACCCTAGTGACTCTCAAGGAGTACCACTCAGCACTCTTTGACGTCAAGAGGCTCATGGAGTTGAATCCATCATCAGAAGTGTATCGGAACCTTGAAGCCCGTCTGAAGACGCAATTGGAAAGTCACTTGCTCCGATACCTGAATCTGAAGCAGAGCTAG 369 51.76 MYREGLHEEALGFYTEALAMAKTRAQKIALHSNRAACYLKLHDFDKAAKECTSVLELDHKHTGALMLRAQTLVTLKEYHSALFDVKRLMELNPSSEVYRNLEARLKTQLESHLLRYLNLKQS* 123
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 21954862 21962081 - Vvi19g1088 Vvi19g1088 782587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1088 122 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 111 - -
Vvi19g1088 122 SMART tpr_5 62 95 IPR019734 GO:0005515
Vvi19g1088 122 SMART tpr_5 28 61 IPR019734 GO:0005515
Vvi19g1088 122 SUPERFAMILY TPR-like 2 110 IPR011990 GO:0005515
Vvi19g1088 122 Gene3D Tetratricopeptide repeat domain 1 119 IPR011990 GO:0005515
Vvi19g1088 122 Pfam Anaphase-promoting complex, cyclosome, subunit 3 6 82 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1088 - - vvi:100244491 218.009