Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1089 ATGGGGGGTGTGGGCAAAACCACCCTCTTGACCAGGATCAACAATGAGCTCCTCAAAACCAGGCTTGAATTTGATGCAGTGATTTGGGTGACTGTGTCCAGACCAGCCAATGTGGAAAAAGTTCAGCAAGTTCTTTTCAATAAATTGGAGATTGGGAAAGATAAATGGGAAGATAGGAGTGAGGATGAAAGGGCAGAAGAAATATTCAATGTCCTGAAGACAAAGAAATTTGTGCTTTTGTTAGATGACATATGGGAGCGGCTGGATCTATCCAAAGTTGGTATTCCTCCTCTGAATCATCAAGATAAGTTGAAGATGGTATTTACAACGCGATCTAAACAAGTGTGCCAAAAGATGGAATCTACCAAGAGCATTGAAGTGAATTGCCTCCCATGGGAGGAAGCTTTTGCTCTGTTTCAGACCAAGGTAGGAGCAGACACCATAAGTTCTCATCCAGATATACCAAAGCTGGCGGAGATGGTTGCCAAAGAGTGTGACGGCTTACCACTTGCCCTCATCACCACAGGGCGAGCAATGGCGGGAGCAAAAGCACCCGAGGAATGGGAGAAAAAAATAGAAATGTTGAAGAATTCTCCTGCAAAGTTTCCAGGTACGGAGGAGGATTTGTTTCGAGTATTAGCAATCAGTTATGATAGCCTACCCGATGAAGCCAAAAAATCGTGTTTCCTATATTGCTCTTTATTTCCGGAGGATTATGAAATCTCTCAACGAAATCTTATACAACTTTGGATCGGGGAGGGTTTTCTGGATGAATATGACAACTTACAAGAAGCAAGAAATCAAGGAGAAGAAGTTATTAAAAGTTTACAGCTTGCATGTCTATTGGAGAATGGCAGATCTCGATTTTACGTAAAAGAAAAATATTTGAAGATGCATGATGTTATTCGTGAGATGGCTTTGTGGTTGGCCCGCAAAAACGGGAAGAAGAAGAACAAATTTGTGGTAAAAGATGGAGTTGAATCGATCAGAGCTCAGAAGTTGAAAAATGGAAAGAGACACAGAGGATATCATTGTGGAATACCAACATTGAAGAACTTAGGGAACCACCATATTTCCCTATTATGGAGACCTTTTTGA 1098 41.44 MGGVGKTTLLTRINNELLKTRLEFDAVIWVTVSRPANVEKVQQVLFNKLEIGKDKWEDRSEDERAEEIFNVLKTKKFVLLLDDIWERLDLSKVGIPPLNHQDKLKMVFTTRSKQVCQKMESTKSIEVNCLPWEEAFALFQTKVGADTISSHPDIPKLAEMVAKECDGLPLALITTGRAMAGAKAPEEWEKKIEMLKNSPAKFPGTEEDLFRVLAISYDSLPDEAKKSCFLYCSLFPEDYEISQRNLIQLWIGEGFLDEYDNLQEARNQGEEVIKSLQLACLLENGRSRFYVKEKYLKMHDVIREMALWLARKNGKKKNKFVVKDGVESIRAQKLKNGKRHRGYHCGIPTLKNLGNHHISLLWRPF* 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 21964514 21967349 - Vvi19g1089 Vvi19g1089 782588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1089 365 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 232 IPR027417 -
Vvi19g1089 365 Gene3D - 217 307 IPR036388 -
Vvi19g1089 365 Gene3D - 130 216 IPR042197 -
Vvi19g1089 365 PRINTS Disease resistance protein signature 71 85 - -
Vvi19g1089 365 PRINTS Disease resistance protein signature 165 179 - -
Vvi19g1089 365 Pfam NB-ARC domain 1 218 IPR002182 GO:0043531
Vvi19g1089 365 Gene3D - 1 129 IPR027417 -
Vvi19g1089 365 Coils Coil 259 279 - -
Vvi19g1089 365 PANTHER DISEASE RESISTANCE PROTEIN RP 1 335 IPR044974 GO:0006952
Vvi19g1089 365 PANTHER DISEASE RESISTANCE PROTEIN RFL1-RELATED 1 335 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1089 - K13459 vvi:100249639 656.366