Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g109 ATGTCGTCGTCTTCTTCATCAAAAGTTGTCGTGGAGTACGCCAAGTCGAATCGGTCTTCGTGCAAGACATGTTCCAAAACGATCTCTGCAAATGCTGTGAGGTTGGGGCTGGTGACCAGAGGCGCGCGAGGCTTCGATATGACCAAGTGGCATCACGTGCATTGCTTTTCGGCTGGTTCCGAGTCGATTTCCTCGGCCGAGATGATACAAGGGTTTGCTTCTTTGAAGAGCAGTGACCAGGAAGCTCTTAAGAAATTGGTTGATGGTTTTGCAAAGTCTCTGGATGAGGTCTTGGATGAAGGTAAAGACCTAACTGAAGGAAGCAAAGAACTGATTTGTGAGGAATTGGGGGTGCATAAAAGAGATGAAGATGAAAAAGATAAGAGGGAAGAAAGGGATTCAAAGAAAACAAAGATGTCTGCACCTGCTCTGAAAGCTGAGCAGGAAATAGCCTTTGCAGTTTCTAATATCAAGGACAAGTATAAGGATGCTACTTTATTGCCAAAATGGAAAGCATTCCAGACAGTAATTTTTCTTGAACGGGATGATGATCTTCATGATTCAAAAAAAATTGCTGCATTCGATTTTGATGGATGTCTTGCCAAAACATCTGTGAAAAGAGTAGGTCCAGATGCTTGGTCCCTTATGTATCCTTCAATACCGGACAAGTTGCAGAGCTTGTATAATGATGGCTACAAGCTGGTAATCTTTACCAATGAATCCAACATAGAGCGCTGGAAGAATAAGAGACAGGTAGCAGTGGACTCAAAAATTGGGCGCCTGAACAATTTCATCAAGTGTGTTAAGGTTCCAATTCAGGTTTTTATATCCTGTGGGTTTGATAAATCTGATGGTCAAGCAGAAGACCCCTTTCGCAAGCCCAAACCTGGGATGTGGCGGATTATGGAGCAACACTTCAACTCTGGCATTTCAATTGATATGGATCAATCCTTTTATGTTGGAGATGCAGCTGGGAGACTAAATGACCACAGTGATGCTGATATTAAATTTGCACAGGCAATTGGACTAAAGTTTTATGTTCCTGAGGAATACTTTGATGCATAA 1065 42.54 MSSSSSSKVVVEYAKSNRSSCKTCSKTISANAVRLGLVTRGARGFDMTKWHHVHCFSAGSESISSAEMIQGFASLKSSDQEALKKLVDGFAKSLDEVLDEGKDLTEGSKELICEELGVHKRDEDEKDKREERDSKKTKMSAPALKAEQEIAFAVSNIKDKYKDATLLPKWKAFQTVIFLERDDDLHDSKKIAAFDFDGCLAKTSVKRVGPDAWSLMYPSIPDKLQSLYNDGYKLVIFTNESNIERWKNKRQVAVDSKIGRLNNFIKCVKVPIQVFISCGFDKSDGQAEDPFRKPKPGMWRIMEQHFNSGISIDMDQSFYVGDAAGRLNDHSDADIKFAQAIGLKFYVPEEYFDA* 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1383807 1390453 + Vvi19g109 Vvi19g109 781608

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g109 354 ProSiteProfiles Poly(ADP-ribose) polymerase zinc finger domain profile. 9 91 IPR001510 GO:0003677|GO:0008270
Vvi19g109 354 CDD HAD_PNP 190 352 - -
Vvi19g109 354 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 9 91 - -
Vvi19g109 354 PANTHER BIFUNCTIONAL POLYNUCLEOTIDE PHOSPHATASE/KINASE 2 352 - -
Vvi19g109 354 SMART zf_PARP_3 12 88 IPR001510 GO:0003677|GO:0008270
Vvi19g109 354 MobiDBLite consensus disorder prediction 122 142 - -
Vvi19g109 354 TIGRFAM HAD-SF-IIIA: HAD hydrolase, family IIIA 190 345 IPR006549 -
Vvi19g109 354 Pfam Polynucleotide kinase 3 phosphatase 190 352 IPR013954 -
Vvi19g109 354 Gene3D - 2 100 IPR036957 GO:0003677|GO:0008270
Vvi19g109 354 Gene3D - 168 354 IPR023214 -
Vvi19g109 354 SUPERFAMILY HAD-like 174 352 IPR036412 -
Vvi19g109 354 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 12 87 IPR001510 GO:0003677|GO:0008270
Vvi19g109 354 TIGRFAM DNA-3'-Pase: DNA 3'-phosphatase 178 352 IPR006551 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g109 K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78] - vvi:100243613 686.797
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g109 . . . . . Bpe08g00982 . . . . . Cma09g00822 . Car09g00740 Sed04g2434 . . Bhi09g03513 Tan01g4317 Cmetu07g1764 . Hepe01g1442 Mch11g1008 . Cla11g01709 Cam11g1777 Cec11g1798 Cco11g1803 Clacu11g1936 Cmu11g1747 Cre11g2155 Cone6ag0195 Cone9ag0226 . . Lsi04g02011 Csa04g02284 Chy07g00022 Cme07g00535 . . . . . . Bma07g01141 . . . Cmo09g00817 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010926 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 1 2 1 29