Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1095 ATGAGCTGCATGCATGTTTTTCCCAACAGTTCAGTTTCTCAAGCAAACACTGTTCATCGGGTGTTCAAGCTAGAGGGAGGACGAACATTAGTTCAGGTCAATGGTCAGAGAGCCGTCTCTGCATGCCTTAATGTGGAGGTTAAAGCGCCAAAGTCTGCAAATTTAGGGAAATTAGGGTTTGGGGAGAGCAAGGATGTCATGGAGATGGAAGGGAGAGTTATTGTGGGAACATATGCAAGAACTCCAATTGTACTTGTGAGCGGAAAAGGATGCAAATTGTATGATGCTGAAGGACGAGAGTATTTGGATATGAGTTCAGGGATTGCAGTGAATTCACTTGGACATGGTGACCCAACTTGGTTGAAAGCCGTCATTGAACAGGCAAACACGCTGACCCACGTCAGCAATATCTACTACTCAATCCCTCAGGTGGAGCTTGCCAAGCGTCTAGTGGCTTGTTCTTTTTCTGATCGTGTGTTTTTCTCAAATTCTGGAACAGAAGCAAATGAAGCTGCCATAAAATTTGCAAGGAAGTTTCAGCGGCACTCACATCCGGATGCAAAGGAGCCTCCCACGGATTTCATAGCTTTTACAAATAGCTTCCATGGGAGGACCATGGGTGCTCTTGCTCTGACCAGCAAGGAGCATTATCGATCACCTTTTGAACCTGTTATGCCTGGAGTCACTTTTGTAGAGTATGGAAATATAGAAGCTACAAAAGAGCTGATTCAGAAAGGCAAAACCGCAGCAGTGTTTGTGGAACCCATCCAGGGAGAAGGGGGTATATACAGTGCAACAAAGGAATTTTTACAATTTCTGCGAAGTGCTTGTGATGATGCTGGGGTTCTCCTTGTTTTCGATGAGGTTCAATGTGGTCTAGGCCGAACTGGGCACCTCTGGGCTCATGAGTCCTATGGTGTATTCCCTGACATAATGACACTAGCCAAGCCTCTTGCTGGAGGCCTACCTATCGGTGCTGTACTGGTCACCGAACGAGTTGCTTCTGCCATAAACTTTGGTGACCATGGAAGCACTTTTGCTGGCAGCCCCCTTGTCTGCAACGCTGCTCTTGCTGTCCTTGAAAAAATCTCAGAACCCAGCTTCTTGGCCAGCGTCGCCAAGAAGGGCCAATACCTGAAGCAAATTTTAACCCAGAAGTTGGGACATAACCCACATGTGAAAGAAGTACGTGGGTTTGGGCTCATTGTTGGGATTGAGCTTGACGTCCAGGCCTCGCCGCTGGTGGTTGCCTGTCAAGAAGCTGGCCTTCTGGTGCTCACCTCTGGAAAGGGGAATGTTGTGAGGCTGGTGCCTCCATTGATCATAACAGAAGAGGAGTTGGAGTTGGCAGCTGAGGTTCTTTCCGGGTCTCTTCCAGCACTTGATGGGAGCAATTCAAAGTAG 1404 47.79 MSCMHVFPNSSVSQANTVHRVFKLEGGRTLVQVNGQRAVSACLNVEVKAPKSANLGKLGFGESKDVMEMEGRVIVGTYARTPIVLVSGKGCKLYDAEGREYLDMSSGIAVNSLGHGDPTWLKAVIEQANTLTHVSNIYYSIPQVELAKRLVACSFSDRVFFSNSGTEANEAAIKFARKFQRHSHPDAKEPPTDFIAFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVTFVEYGNIEATKELIQKGKTAAVFVEPIQGEGGIYSATKEFLQFLRSACDDAGVLLVFDEVQCGLGRTGHLWAHESYGVFPDIMTLAKPLAGGLPIGAVLVTERVASAINFGDHGSTFAGSPLVCNAALAVLEKISEPSFLASVAKKGQYLKQILTQKLGHNPHVKEVRGFGLIVGIELDVQASPLVVACQEAGLLVLTSGKGNVVRLVPPLIITEEELELAAEVLSGSLPALDGSNSK* 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 22076109 22082842 - Vvi19g1095 Vvi19g1095 782594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1095 467 PANTHER ACETYLORNITHINE AMINOTRANSFERASE 22 463 - -
Vvi19g1095 467 PANTHER AMINOTRANSFERASE CLASS III 22 463 - -
Vvi19g1095 467 Gene3D - 117 366 IPR015421 GO:0003824
Vvi19g1095 467 SUPERFAMILY PLP-dependent transferases 75 458 IPR015424 -
Vvi19g1095 467 CDD OAT_like 67 443 IPR005814 GO:0008483|GO:0030170
Vvi19g1095 467 Pfam Aminotransferase class-III 81 455 IPR005814 GO:0008483|GO:0030170
Vvi19g1095 467 Hamap Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 73 461 IPR004636 GO:0006525|GO:0008483
Vvi19g1095 467 Gene3D Aspartate Aminotransferase, domain 1 82 448 IPR015422 GO:0003824
Vvi19g1095 467 PIRSF Transaminase_4ab_Lys_Orn 28 223 IPR005814 GO:0008483|GO:0030170
Vvi19g1095 467 PIRSF Transaminase_4ab_Lys_Orn 216 461 IPR005814 GO:0008483|GO:0030170
Vvi19g1095 467 ProSitePatterns Aminotransferases class-III pyridoxal-phosphate attachment site. 284 321 IPR005814 GO:0008483|GO:0030170
Vvi19g1095 467 TIGRFAM argD: transaminase, acetylornithine/succinylornithine family 74 455 IPR004636 GO:0006525|GO:0008483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1095 K00818 - vvi:100242776 900.197