Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1095 ATGAGCTGCATGCATGTTTTTCCCAACAGTTCAGTTTCTCAAGCAAACACTGTTCATCGGGTGTTCAAGCTAGAGGGAGGACGAACATTAGTTCAGGTCAATGGTCAGAGAGCCGTCTCTGCATGCCTTAATGTGGAGGTTAAAGCGCCAAAGTCTGCAAATTTAGGGAAATTAGGGTTTGGGGAGAGCAAGGATGTCATGGAGATGGAAGGGAGAGTTATTGTGGGAACATATGCAAGAACTCCAATTGTACTTGTGAGCGGAAAAGGATGCAAATTGTATGATGCTGAAGGACGAGAGTATTTGGATATGAGTTCAGGGATTGCAGTGAATTCACTTGGACATGGTGACCCAACTTGGTTGAAAGCCGTCATTGAACAGGCAAACACGCTGACCCACGTCAGCAATATCTACTACTCAATCCCTCAGGTGGAGCTTGCCAAGCGTCTAGTGGCTTGTTCTTTTTCTGATCGTGTGTTTTTCTCAAATTCTGGAACAGAAGCAAATGAAGCTGCCATAAAATTTGCAAGGAAGTTTCAGCGGCACTCACATCCGGATGCAAAGGAGCCTCCCACGGATTTCATAGCTTTTACAAATAGCTTCCATGGGAGGACCATGGGTGCTCTTGCTCTGACCAGCAAGGAGCATTATCGATCACCTTTTGAACCTGTTATGCCTGGAGTCACTTTTGTAGAGTATGGAAATATAGAAGCTACAAAAGAGCTGATTCAGAAAGGCAAAACCGCAGCAGTGTTTGTGGAACCCATCCAGGGAGAAGGGGGTATATACAGTGCAACAAAGGAATTTTTACAATTTCTGCGAAGTGCTTGTGATGATGCTGGGGTTCTCCTTGTTTTCGATGAGGTTCAATGTGGTCTAGGCCGAACTGGGCACCTCTGGGCTCATGAGTCCTATGGTGTATTCCCTGACATAATGACACTAGCCAAGCCTCTTGCTGGAGGCCTACCTATCGGTGCTGTACTGGTCACCGAACGAGTTGCTTCTGCCATAAACTTTGGTGACCATGGAAGCACTTTTGCTGGCAGCCCCCTTGTCTGCAACGCTGCTCTTGCTGTCCTTGAAAAAATCTCAGAACCCAGCTTCTTGGCCAGCGTCGCCAAGAAGGGCCAATACCTGAAGCAAATTTTAACCCAGAAGTTGGGACATAACCCACATGTGAAAGAAGTACGTGGGTTTGGGCTCATTGTTGGGATTGAGCTTGACGTCCAGGCCTCGCCGCTGGTGGTTGCCTGTCAAGAAGCTGGCCTTCTGGTGCTCACCTCTGGAAAGGGGAATGTTGTGAGGCTGGTGCCTCCATTGATCATAACAGAAGAGGAGTTGGAGTTGGCAGCTGAGGTTCTTTCCGGGTCTCTTCCAGCACTTGATGGGAGCAATTCAAAGTAG 1404 47.79 MSCMHVFPNSSVSQANTVHRVFKLEGGRTLVQVNGQRAVSACLNVEVKAPKSANLGKLGFGESKDVMEMEGRVIVGTYARTPIVLVSGKGCKLYDAEGREYLDMSSGIAVNSLGHGDPTWLKAVIEQANTLTHVSNIYYSIPQVELAKRLVACSFSDRVFFSNSGTEANEAAIKFARKFQRHSHPDAKEPPTDFIAFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVTFVEYGNIEATKELIQKGKTAAVFVEPIQGEGGIYSATKEFLQFLRSACDDAGVLLVFDEVQCGLGRTGHLWAHESYGVFPDIMTLAKPLAGGLPIGAVLVTERVASAINFGDHGSTFAGSPLVCNAALAVLEKISEPSFLASVAKKGQYLKQILTQKLGHNPHVKEVRGFGLIVGIELDVQASPLVVACQEAGLLVLTSGKGNVVRLVPPLIITEEELELAAEVLSGSLPALDGSNSK* 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 22076109 22082842 - Vvi19g1095 Vvi19g1095 782594

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1095 467 PANTHER ACETYLORNITHINE AMINOTRANSFERASE 22 463 - -
Vvi19g1095 467 PANTHER AMINOTRANSFERASE CLASS III 22 463 - -
Vvi19g1095 467 Gene3D - 117 366 IPR015421 GO:0003824
Vvi19g1095 467 SUPERFAMILY PLP-dependent transferases 75 458 IPR015424 -
Vvi19g1095 467 CDD OAT_like 67 443 IPR005814 GO:0008483|GO:0030170
Vvi19g1095 467 Pfam Aminotransferase class-III 81 455 IPR005814 GO:0008483|GO:0030170
Vvi19g1095 467 Hamap Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 73 461 IPR004636 GO:0006525|GO:0008483
Vvi19g1095 467 Gene3D Aspartate Aminotransferase, domain 1 82 448 IPR015422 GO:0003824
Vvi19g1095 467 PIRSF Transaminase_4ab_Lys_Orn 28 223 IPR005814 GO:0008483|GO:0030170
Vvi19g1095 467 PIRSF Transaminase_4ab_Lys_Orn 216 461 IPR005814 GO:0008483|GO:0030170
Vvi19g1095 467 ProSitePatterns Aminotransferases class-III pyridoxal-phosphate attachment site. 284 321 IPR005814 GO:0008483|GO:0030170
Vvi19g1095 467 TIGRFAM argD: transaminase, acetylornithine/succinylornithine family 74 455 IPR004636 GO:0006525|GO:0008483
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1095 K00818 E2.6.1.11, argD; acetylornithine aminotransferase [EC:2.6.1.11] - vvi:100242776 900.197
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1095 . Blo13g00589 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma03g00508 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010811 0 1 1 0 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 3 32