Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g11 ATGGGAGCTCTGAGCAAGCTAAGCCAATGGAGGACGCTAGCAAGAGAAGCAGCCGAACGAACAGCCATTCTCGCCAAGTTCCTCTGCATCCTCCACGTCACCAACACCTACATTTGTACCCCTACTCTCGTGTACGGTCCGAGCATGCTCCCGACGTTCAATCTGACGGGTGACGTGCTGTTGGTAGAGAACCTGACGGTGCGGATGGGGAAGGTGCGACCGGGAGACGTAGTTCTGGTTCGATCACCTGAAAACCCTAGAAAGACTGTGAGCAAGCGCATTTTGGGAATGGAAGGTGATAGGGTCACTTTCATGATCGATCCCAAGAACAGTAACAGATGTCAATCCGTCGTGATTCCAAAGGGGCATGTCTGGATTCAGGGGGATAATATTTATGCTTCTCATGATTCACGGAATTTTGGGCCTGTTCCCTACGGCCTTATTCAAGGCAAAGTTTTCTTCAGGGTATGGCCACTTAACGGCTTTGGATCATTGAGGCAATGA 504 50.6 MGALSKLSQWRTLAREAAERTAILAKFLCILHVTNTYICTPTLVYGPSMLPTFNLTGDVLLVENLTVRMGKVRPGDVVLVRSPENPRKTVSKRILGMEGDRVTFMIDPKNSNRCQSVVIPKGHVWIQGDNIYASHDSRNFGPVPYGLIQGKVFFRVWPLNGFGSLRQ* 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 101179 112143 + Vvi19g11 Vvi19g11 781510

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g11 167 Pfam Signal peptidase, peptidase S26 23 104 IPR019533 GO:0004252|GO:0006465
Vvi19g11 167 Pfam Signal peptidase, peptidase S26 113 157 IPR019533 GO:0004252|GO:0006465
Vvi19g11 167 SUPERFAMILY LexA/Signal peptidase 36 165 IPR036286 -
Vvi19g11 167 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 4 166 - -
Vvi19g11 167 PANTHER PEPTIDASE S24/S26A/S26B/S26C FAMILY PROTEIN 4 166 - -
Vvi19g11 167 Gene3D Umud Fragment, subunit A 34 164 - -
Vvi19g11 167 PRINTS Bacterial leader peptidase 1 (S26A) family signature 37 53 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vvi19g11 167 PRINTS Bacterial leader peptidase 1 (S26A) family signature 90 102 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vvi19g11 167 PRINTS Bacterial leader peptidase 1 (S26A) family signature 119 138 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vvi19g11 167 CDD S26_SPase_I 41 152 IPR019533 GO:0004252|GO:0006465
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g11 K09647 IMP1; mitochondrial inner membrane protease subunit 1 [EC:3.4.21.-] - vvi:100255515 330.872
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g11 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla07g00987 Cam07g1061 Cec07g1132 Cco07g1109 Clacu07g1033 Cmu07g1026 Cre07g1404 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002901 0 2 0 0 1 1 1 1 1 2 1 2 3 2 2 3 2 1 3 1 2 2 2 2 1 2 2 0 6 2 50