Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g110 ATGCAGACGCAAAACCTCTCATTTCCTAAAACCCTAAACCCTCCCCTAACTTCATCCTTCACAAAACCCCCTCACCCTCACTCCAAATCCCTGACCCTGATCCCGTCTCCCAAATTCCCCAAACCCATCTCCCTCAACCACCGCAATGTCCGCGCGCTCGCCGGCCGGAGCAAGAAGTCCCCCGGCGGCCCTTCCCCCGGCCGTATCGAGGGTGGCGCCGAGGTCCGCCGCGAGGCCAAGCGCAACGCCCGCCGGAAAATGCAGAAACTCGCGGAGTCCCTCTTCTACCGCCTCAAGAACCCTCATCGCAACTATGCAGACAATTTCAGCGAGGAGGAGCTCCAGATGATCGGTCTTGGCTACGACCGGATGGTCCGGTTCATGGAAAAGGACGACCCGAATCTCCGACACCCCTACGACTGGTACAAGTATGGCGAATTTGGGCCGTATTCGTGGCGCGGCATCGTTTTGGGTGACCCGATTCGCGGCAGGATGTCGGACGAGTGCGTGACGTTGATAGGAGAGGTGAGGGATCAGGAAGAGTGGGAGAAGATCGAGCAGCACGAAATGGCTATCGATTTTGGTGAAAAATTGAATTCGATGGATAAGAGTGTAGGATTTAGGTATTTTTGGGTGTTTGTTAGGCACCCAAAGTGGAGACTCAATGAATTGCCATGGCAGCAATGGACCCTTGTGTGTGAAGTTGTGCTTGAGGCCGGAAAACAGAGATTGGATAAATGGAGTTTGATGGGGAGGCTAGGGAACAAGGCTAGGGCATTGATCACGCAGTGCGCAGCCTGGATGAGACCCGATATCATATACGTCAAGCGGCCGGTGTACCAGTGCAGGTTTGAGCCTCAGGATGATTTTTTCCGGGCGCTGACGCCACTCCTGGACCCGAAAACTGAAGGGGATTTTCTGTTTGAGCTGCGGCATGAAGATGGGAGGGTGGAGGTGTGTACTTATTTTGCTGGTTTGTGTAAGATTGTGAAGGTGAATCCAAAGGCATTTGTGGATGACGTTGTGAAGGCCTATGAGAAGCTGAGCGATGAGGGGAAGTCCAGGTGTTTGGAGTTTTTGTTAGGGAATCACCCTGTTGAGCTCCTCCATCCTTACACCAAGGAATGGAAGGCCAAGTTGGAGGAGATGGAATTGGGTTGTGATGCCCCTGATGATGATGATGAAGTTGGGATTAAGGCCGATGCCGACGATAACGAGGAGTACTGGGATAATGAATTCAAGAAGGCGCTGAGCAGCAATGAAGCAATGGAGAATCTAGCAAGGAGGAGTGTAGAGAGGTCTACCGAACTCTACAAGAGCCAGATGAAAGCAATGGAAGAAGGTAAGGCAAAGGCAAAGGAGGTTGAAGAAGATGAGATGAGGGGGAAGAGACCGAAAGTGAGTCAACAAGAGTGGAAGTATGCCGGGTATGGTCCATGGAGGAGGAGGATTAAGAAGAGTAAGATACCTCCGGAGCTGTTTTTGCGAGCAGCGGTGAGACCCTTCACATATCAGAGTCTAGTGAAGGAGATTGTGTTGACAAGGCATGCTATTTTGGATGGCGAAATTGGTAGGAAGGACTGA 1584 51.96 MQTQNLSFPKTLNPPLTSSFTKPPHPHSKSLTLIPSPKFPKPISLNHRNVRALAGRSKKSPGGPSPGRIEGGAEVRREAKRNARRKMQKLAESLFYRLKNPHRNYADNFSEEELQMIGLGYDRMVRFMEKDDPNLRHPYDWYKYGEFGPYSWRGIVLGDPIRGRMSDECVTLIGEVRDQEEWEKIEQHEMAIDFGEKLNSMDKSVGFRYFWVFVRHPKWRLNELPWQQWTLVCEVVLEAGKQRLDKWSLMGRLGNKARALITQCAAWMRPDIIYVKRPVYQCRFEPQDDFFRALTPLLDPKTEGDFLFELRHEDGRVEVCTYFAGLCKIVKVNPKAFVDDVVKAYEKLSDEGKSRCLEFLLGNHPVELLHPYTKEWKAKLEEMELGCDAPDDDDEVGIKADADDNEEYWDNEFKKALSSNEAMENLARRSVERSTELYKSQMKAMEEGKAKAKEVEEDEMRGKRPKVSQQEWKYAGYGPWRRRIKKSKIPPELFLRAAVRPFTYQSLVKEIVLTRHAILDGEIGRKD* 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1391460 1393290 - Vvi19g110 Vvi19g110 781609

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g110 527 Coils Coil 438 458 - -
Vvi19g110 527 MobiDBLite consensus disorder prediction 1 84 - -
Vvi19g110 527 PANTHER OSJNBA0067K08.20 PROTEIN 19 396 - -
Vvi19g110 527 PANTHER OSJNBA0067K08.20 PROTEIN 399 526 - -
Vvi19g110 527 MobiDBLite consensus disorder prediction 1 26 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g110 - - - vvi:100248749 847.04
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g110 . . . . . Bpe08g00981 . . . . . Cma09g00821 . Car09g00738 Sed04g2435 . . Bhi09g03512 Tan01g4318 Cmetu07g0546 . Hepe01g1441 Mch11g1010 . Cla11g01710 Cam11g1778 Cec11g1799 Cco11g1804 Clacu11g1937 Cmu11g1748 Cre11g2156 . Cone9ag0225 . . Lsi04g02012 Csa04g02286 Chy07g00023 Cme07g00536 . . . . . . Bma07g01140 . . . Cmo09g00816 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011575 1 1 0 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27