Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1103 ATGGATTTCCAAGTGGTGGTCCTAGCTGGCGGGACTTCAAAGAAACTCGTCCCTCTTGTTTCCAAGGAAGTTCCAAAAGCACTGCTTCCAGTAGCAAACCGACCAGTTCTTTCTTATGTTTTGGAGCTCCTTGAACACAGCAACCTGAAGGATCTCATCGTTGTTGTTGAAGGGCAGGATGCCGCTCTGCGTGTTGGGGGTTGGATATCAGGTGCTTATGTTGATCGGCTACATGTTGAGGTTGCTGCAGTTCCTGAGGATGTTGGAACTGCTGGTGCACTTCGGGCCATTGCACACCACTTGACCGCTAATGACATTTTGGTGGTAAGTGGTGATCTTGTTTGTGATGTTTCCCCTGGGGCAGTGGCAGCAGCTCATAGACGGCATGGTGCTGCAGTGACCGCTATGCTTTGCTCTGTTCCTGTCAGTGGACCATTGGAGTCAGGATCCTCTAGTGGAAAGGACAAAACCAAGAAACCTGGGTGTTGCAACATTATAGGGCTGGATCCCACTAAACAGTTCCTATTATACATTGCTACAGGACCAGAAATTGAGAGAGATATCCGAGTTCAAAAGAGCATACTCCGTGCAGTAGGCCAGATGGAAATTCGAGCTGATCTCATGGATGCTCATTTGTATGCATTCAAGAGGGCTGTTCTGCAAGAAGTTTTAGATCAAAAGGATGCATTTCAAAGCTTACAGCAAGATGTTTTACCTTATCTTGTCCGGAGCCAGCTGAGGTCGGAACTATCGTTGAATGGTGCACCACACACAGAAGAAAATGGTCACGACAAGGTTGTTCCTGGGATCAACCAAGTAATGCTTTCTCAACTACTTGCTAAGACATCTACACCAAGTTTTCATGAACTTTATGCTATGGGCCCTAATGGATCTGCACCTGTTCGAAGAACCCACAAATGCTGTGTTTATATTGCCAGCCAGGACAAGTACTGTGCCCGTTTAAATTCTATTCAAGCTTTCAGTGACATAAATCGAGATGTCATAGGCGAGGCAAGTCACCTGTCAGGGTATTCCTTCTCTGCCCAAAACAACATCATCCACCCCTCAGCAGAGCTCGGATCAAAAACAACCGTTGGACAAAATTGTATGCTAGGGGAAGGTTCACAACTGGGGGACAAATGTAGTGTGAAGCGATCAGTTATTGGCCGCCACTGTCGGATAGGTTCTAATGTAAAGGTCGTTAATTCGGTAGTTATGAACCATGTTACAATCAGTGATGGTTGTTCAATCCAAGGTTCTGTAATTTGCAGCAATGCTCAGCTTCAGGAGCGAGTTGTACTTAAAGATTGTCAGGTTGGAGCAGGGTTCGTTGTCACTTCTGGCAGCGAATACAAGGGCGAGTTCCTGGCAAAAAAAGAGAGATAA 1386 46.25 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLELLEHSNLKDLIVVVEGQDAALRVGGWISGAYVDRLHVEVAAVPEDVGTAGALRAIAHHLTANDILVVSGDLVCDVSPGAVAAAHRRHGAAVTAMLCSVPVSGPLESGSSSGKDKTKKPGCCNIIGLDPTKQFLLYIATGPEIERDIRVQKSILRAVGQMEIRADLMDAHLYAFKRAVLQEVLDQKDAFQSLQQDVLPYLVRSQLRSELSLNGAPHTEENGHDKVVPGINQVMLSQLLAKTSTPSFHELYAMGPNGSAPVRRTHKCCVYIASQDKYCARLNSIQAFSDINRDVIGEASHLSGYSFSAQNNIIHPSAELGSKTTVGQNCMLGEGSQLGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTISDGCSIQGSVICSNAQLQERVVLKDCQVGAGFVVTSGSEYKGEFLAKKER* 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 22213702 22228306 + Vvi19g1103 Vvi19g1103 782602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1103 461 Gene3D Hexapeptide repeat proteins 345 454 - -
Vvi19g1103 461 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 344 IPR029044 -
Vvi19g1103 461 SUPERFAMILY Nucleotide-diphospho-sugar transferases 4 426 IPR029044 -
Vvi19g1103 461 Pfam Nucleotidyl transferase 6 145 IPR005835 GO:0009058|GO:0016779
Vvi19g1103 461 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT GAMMA 1 459 - -
Vvi19g1103 461 CDD LbH_eIF2B_gamma_C 370 450 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1103 K03241 - vvi:100247923 890.567