Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1103 ATGGATTTCCAAGTGGTGGTCCTAGCTGGCGGGACTTCAAAGAAACTCGTCCCTCTTGTTTCCAAGGAAGTTCCAAAAGCACTGCTTCCAGTAGCAAACCGACCAGTTCTTTCTTATGTTTTGGAGCTCCTTGAACACAGCAACCTGAAGGATCTCATCGTTGTTGTTGAAGGGCAGGATGCCGCTCTGCGTGTTGGGGGTTGGATATCAGGTGCTTATGTTGATCGGCTACATGTTGAGGTTGCTGCAGTTCCTGAGGATGTTGGAACTGCTGGTGCACTTCGGGCCATTGCACACCACTTGACCGCTAATGACATTTTGGTGGTAAGTGGTGATCTTGTTTGTGATGTTTCCCCTGGGGCAGTGGCAGCAGCTCATAGACGGCATGGTGCTGCAGTGACCGCTATGCTTTGCTCTGTTCCTGTCAGTGGACCATTGGAGTCAGGATCCTCTAGTGGAAAGGACAAAACCAAGAAACCTGGGTGTTGCAACATTATAGGGCTGGATCCCACTAAACAGTTCCTATTATACATTGCTACAGGACCAGAAATTGAGAGAGATATCCGAGTTCAAAAGAGCATACTCCGTGCAGTAGGCCAGATGGAAATTCGAGCTGATCTCATGGATGCTCATTTGTATGCATTCAAGAGGGCTGTTCTGCAAGAAGTTTTAGATCAAAAGGATGCATTTCAAAGCTTACAGCAAGATGTTTTACCTTATCTTGTCCGGAGCCAGCTGAGGTCGGAACTATCGTTGAATGGTGCACCACACACAGAAGAAAATGGTCACGACAAGGTTGTTCCTGGGATCAACCAAGTAATGCTTTCTCAACTACTTGCTAAGACATCTACACCAAGTTTTCATGAACTTTATGCTATGGGCCCTAATGGATCTGCACCTGTTCGAAGAACCCACAAATGCTGTGTTTATATTGCCAGCCAGGACAAGTACTGTGCCCGTTTAAATTCTATTCAAGCTTTCAGTGACATAAATCGAGATGTCATAGGCGAGGCAAGTCACCTGTCAGGGTATTCCTTCTCTGCCCAAAACAACATCATCCACCCCTCAGCAGAGCTCGGATCAAAAACAACCGTTGGACAAAATTGTATGCTAGGGGAAGGTTCACAACTGGGGGACAAATGTAGTGTGAAGCGATCAGTTATTGGCCGCCACTGTCGGATAGGTTCTAATGTAAAGGTCGTTAATTCGGTAGTTATGAACCATGTTACAATCAGTGATGGTTGTTCAATCCAAGGTTCTGTAATTTGCAGCAATGCTCAGCTTCAGGAGCGAGTTGTACTTAAAGATTGTCAGGTTGGAGCAGGGTTCGTTGTCACTTCTGGCAGCGAATACAAGGGCGAGTTCCTGGCAAAAAAAGAGAGATAA 1386 46.25 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLELLEHSNLKDLIVVVEGQDAALRVGGWISGAYVDRLHVEVAAVPEDVGTAGALRAIAHHLTANDILVVSGDLVCDVSPGAVAAAHRRHGAAVTAMLCSVPVSGPLESGSSSGKDKTKKPGCCNIIGLDPTKQFLLYIATGPEIERDIRVQKSILRAVGQMEIRADLMDAHLYAFKRAVLQEVLDQKDAFQSLQQDVLPYLVRSQLRSELSLNGAPHTEENGHDKVVPGINQVMLSQLLAKTSTPSFHELYAMGPNGSAPVRRTHKCCVYIASQDKYCARLNSIQAFSDINRDVIGEASHLSGYSFSAQNNIIHPSAELGSKTTVGQNCMLGEGSQLGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTISDGCSIQGSVICSNAQLQERVVLKDCQVGAGFVVTSGSEYKGEFLAKKER* 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 22213702 22228306 + Vvi19g1103 Vvi19g1103 782602

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1103 461 Gene3D Hexapeptide repeat proteins 345 454 - -
Vvi19g1103 461 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 344 IPR029044 -
Vvi19g1103 461 SUPERFAMILY Nucleotide-diphospho-sugar transferases 4 426 IPR029044 -
Vvi19g1103 461 Pfam Nucleotidyl transferase 6 145 IPR005835 GO:0009058|GO:0016779
Vvi19g1103 461 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT GAMMA 1 459 - -
Vvi19g1103 461 CDD LbH_eIF2B_gamma_C 370 450 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1103 K03241 EIF2B3; translation initiation factor eIF-2B subunit gamma - vvi:100247923 890.567
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1103 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005245 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 2 1 1 1 1 1 4 1 40