Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1109 ATGGGGAAGAAGAAGAAGAGGCAGAAGATTATCCTGCCGCCGGATCTCCCACCAGAGATTCCCGAGGATGAAGTCGAAGTTTCCGATGAGGATTTGCAGTTTTTCGATGAGAATCGAGACTACGCCGGCTTCGTTTCCACTTTGGACACTCATTCGATCACTAGGCATGTTTCACGTGTTGCCAATGTGAAAGAAGATGCTTTGGAGGCTTTATATGAGAGGCGGTTGAAGAAGAAGGCGGCAGAGAAACAGAAAGAGGAGAGTGCGCTTCAAGTTGATCCTGTAGATGCCCTTCCTGTCAAAACCTTAGATGGAGAACTATACTACAGGACAGCACCAAAGAAACCAAAAGATTCTGAAAATGCAGCTGATAAATATGAAGCAGATGGGGAGGATGGAAATGAAGGTGTAGATAAAAGTATAGTGAAGCTGACAAAAGCAGAACGGAGGGCAAAGCTTAAGAAGAGTAAGAAAGAAGCAAAGAAACAAGGGAAGGAACTTGATAAAACAGAGGATGTGCAACAAACACCACAAGCTGCTGCGTTGGCTGAGGTAAAACAAGATCTCACAGCTGAAGAAACATTTGAAAGTAAGAAGCGCAAACTAGCAGAGTTGGGAATGGCACTGCTTGCAGATCCAGAAGCTAATATTAAAACCTTAAAAGAGATGTTGCAAATCTCTAAAGATGATGATCAGGCTATTGTCAAGCTTGCGCTGCTGTCTTTGTTGGCTGTTTTCAAAGACATTATTCCTGGCTACCGTATCAGGCTTCCTACTGAAAAGGAGCTGGAGATGACTGTATCAAAGGAAGTTAAAAAGAAGCGGTACTATGAATCCACACTTTTATCTACATACAAGGCATATCTGCAGAAGTTGATGGCATTGGAACGGCAGGCCTCATTTCAGCATATTGTTTATCGCTGTATCTGTACTTTGCTAGATGCAGTTCCCCACTTCAACTTCCGTGAGAGCTTGTTAGCTGCAGTTATAAAAAACATAGGCTCCTCCGATGATGTAGTAAGGAAACTTTGTTGTGCTACTGTTAAATCACTTTTTACCAACGATGGGAAACATGGAGGTGAAGCTACTGTGGAGGCTGTTCAATTGATTGCAGATCATGTGAAAGCTCATGATTGCCAATTGCACCCTGATTCCATTGAGGTTTTCATGTATTTGACGTTTGATGAAGATCTTGGGAGGCCTGAAAACCCAAATGAGGATAATAAAGTCAAAAGCAAGAAAAATAAGAAGCGAAAGAACCGTGAGGAGTCAGGTGAGCTGCAAGAGAGAGACAAAAAGAAAAATAGGCAAGAATTGGTCACAAAGATGAGAGAAGAGGTCAATGCCGACTTTAGGGCTGCTTCTTTTGCCCCAGATGTTAAGGAGCGGAGAATGATGCAGTCGGAGGCACTTTCTGCTGTATTTGAGACATACTTCCGCATCTTGAAGCATAGTATGCGGCAAATTTCAGTCAGATCTGAAGAGAATGGGAGTTCATTACCTGGTGCATCTGGGAATCATCCCCTACTTGTTCCATGTTTGATAGGATTAGGAAAATTCTCTCACCTGATTGACTTAGATTTTATGGGCGATCTCATGAACTGTCTGAGAAAGCTTGCCTGTGGCAGCAGCAACTCTGATGGTTCCTGCAATAAACTTTTGACTGTATCTGAACGTCTTCGATGCTGCATTGTTGCCTTCAAAGTGATGAGGAACAATCTTGAGGCCTTGAATGTTGATTTACAGGAATTCTTCATCCAGCTTTACAATCTTAGTATTGAGTACAGGCCCGGAAGAGATCAGGGTGAGGTGTTAGCCGAAGCACTGAAGATCATGCTGTGTGATGATAGACAGCATGACATGCAAAAGGCTGCTGCTTTTATAAAACGATTGGCTACATTCTCGTTATGCTTTGGGTCTGCGGAGTCCATGGCTGCCTTGGTTACTTTAAAGCATCTTCTTCAGAAGAATGTTAAGTGCCGGCATCTGTTGGAAAATGATGCAGGAGGTTGTTCAGTTTTGGGTTCCATCGTGAAATATCAGCCATACGCCTCTGACCCAAGCCAAAGTGGTGCACTCGCCTCAGTCCTTTGGGAACTCAATCTTCTATCCAAGCACTACCACCCAGCTGTTTCAACAATGGCTTCAAACGTCTCAGGCATGAGCACTGGTCACAACCAAGTCTATCTTGCCACGGTTTCTCCTCAACAAGCCTTTGCAGACTTATCACTTGAACACGAGTCATTCATCAATCCAAAGAACATCGTCATGAAATCAAATCATAAGAGAAAACGAGGAAGCGGGTCATCTGGAGCAGCTAGCATCAACCCAACCCCAGATGCCGCTACTCCAATCGATGAAGATGGGTTGAGGAAGAAACTTTCAGAGCATTTCACAATTCTGCACGACATCAAGGAGAACGAGAGATTAAGGGGTGAGTTAGATCGTGTAACACTATCCCTGCAGGTATACGAAGAACATAAGAATCGAAAGAAGAGAAAACATGCCTCAAAACCCAAGAAAAATGCAGAAAAAACTGCCAGTTGA 2547 43.54 MGKKKKRQKIILPPDLPPEIPEDEVEVSDEDLQFFDENRDYAGFVSTLDTHSITRHVSRVANVKEDALEALYERRLKKKAAEKQKEESALQVDPVDALPVKTLDGELYYRTAPKKPKDSENAADKYEADGEDGNEGVDKSIVKLTKAERRAKLKKSKKEAKKQGKELDKTEDVQQTPQAAALAEVKQDLTAEETFESKKRKLAELGMALLADPEANIKTLKEMLQISKDDDQAIVKLALLSLLAVFKDIIPGYRIRLPTEKELEMTVSKEVKKKRYYESTLLSTYKAYLQKLMALERQASFQHIVYRCICTLLDAVPHFNFRESLLAAVIKNIGSSDDVVRKLCCATVKSLFTNDGKHGGEATVEAVQLIADHVKAHDCQLHPDSIEVFMYLTFDEDLGRPENPNEDNKVKSKKNKKRKNREESGELQERDKKKNRQELVTKMREEVNADFRAASFAPDVKERRMMQSEALSAVFETYFRILKHSMRQISVRSEENGSSLPGASGNHPLLVPCLIGLGKFSHLIDLDFMGDLMNCLRKLACGSSNSDGSCNKLLTVSERLRCCIVAFKVMRNNLEALNVDLQEFFIQLYNLSIEYRPGRDQGEVLAEALKIMLCDDRQHDMQKAAAFIKRLATFSLCFGSAESMAALVTLKHLLQKNVKCRHLLENDAGGCSVLGSIVKYQPYASDPSQSGALASVLWELNLLSKHYHPAVSTMASNVSGMSTGHNQVYLATVSPQQAFADLSLEHESFINPKNIVMKSNHKRKRGSGSSGAASINPTPDAATPIDEDGLRKKLSEHFTILHDIKENERLRGELDRVTLSLQVYEEHKNRKKRKHASKPKKNAEKTAS* 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 22290728 22301684 - Vvi19g1109 Vvi19g1109 782608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1109 848 MobiDBLite consensus disorder prediction 823 848 - -
Vvi19g1109 848 MobiDBLite consensus disorder prediction 400 437 - -
Vvi19g1109 848 SUPERFAMILY ARM repeat 219 601 IPR016024 -
Vvi19g1109 848 PIRSF Noc3 1 817 IPR016903 -
Vvi19g1109 848 PIRSF Noc3 785 847 IPR016903 -
Vvi19g1109 848 Pfam Nucleolar complex-associated protein 198 288 IPR011501 -
Vvi19g1109 848 MobiDBLite consensus disorder prediction 1 23 - -
Vvi19g1109 848 Coils Coil 807 827 - -
Vvi19g1109 848 Pfam CBF/Mak21 family 560 715 IPR005612 -
Vvi19g1109 848 MobiDBLite consensus disorder prediction 419 437 - -
Vvi19g1109 848 PANTHER NUCLEOLAR COMPLEX PROTEIN 3 3 778 IPR016903 -
Vvi19g1109 848 MobiDBLite consensus disorder prediction 109 147 - -
Vvi19g1109 848 MobiDBLite consensus disorder prediction 109 179 - -
Vvi19g1109 848 MobiDBLite consensus disorder prediction 756 786 - -
Vvi19g1109 848 Coils Coil 150 173 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1109 K14834 - vvi:100263319 1551.57