Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1111 ATGCAGATCTTCGTGAAAACCCTAACTGGGAAGACGATCACTCTCGAGGTCGAGAGCAGCGACACCATCGACAATGTCAAAGCCAAGATTCAGGACAAGGAAGGCATTCCTCCTGATCAGCAGAGATTGATTTTTGCTGGCAAACAACTGGAAGATGGTCGCACTCTTGCAGATTATAACATCCAAAAAGAGTCCACACTTCACCTTGTTTTGAGGCTCAGGGGAGGAACTATGATTAAGGTGAAAACTTTGACTGGAAAAGAAATCGAGATTGATATTGAACCAACCGATACCATTGATCGGATCAAGGAACGAGTTGAGGAGAAAGAAGGCATTCCGCCAGTGCAACAAAGGCTCATTTATGCTGGCAAACAACTCGGAGATGACAAAACTGCTCGTGACTACAACATTGAGGGAGGCTCTGTCCTGCATCTCGTCCTTGCACTGAGGGGTGGAGGCAGCGCCTGA 468 47.22 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLGDDKTARDYNIEGGSVLHLVLALRGGGSA* 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 22340451 22349741 + Vvi19g1111 Vvi19g1111 782610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1111 155 PRINTS Ubiquitin signature 11 31 IPR019956 -
Vvi19g1111 155 PRINTS Ubiquitin signature 32 52 IPR019956 -
Vvi19g1111 155 PRINTS Ubiquitin signature 53 74 IPR019956 -
Vvi19g1111 155 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Vvi19g1111 155 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Vvi19g1111 155 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Vvi19g1111 155 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Vvi19g1111 155 SUPERFAMILY Ubiquitin-like 79 153 IPR029071 -
Vvi19g1111 155 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Vvi19g1111 155 Gene3D - 1 78 - -
Vvi19g1111 155 Gene3D - 79 155 - -
Vvi19g1111 155 SMART ubq_7 1 72 IPR000626 GO:0005515
Vvi19g1111 155 SMART ubq_7 77 148 IPR000626 GO:0005515
Vvi19g1111 155 PANTHER - 1 152 - -
Vvi19g1111 155 CDD Ubl_NEDD8 79 152 IPR038738 -
Vvi19g1111 155 CDD Ubl_ubiquitin 1 76 - -
Vvi19g1111 155 PANTHER UBIQUITIN 1 152 - -
Vvi19g1111 155 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Vvi19g1111 155 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1111 K12158 - vvi:100241051 295.049