Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1112 ATGGGGAGAGGCAGAGCCCCTTGTTGTGATAAGAGTAAGGTGAAGAGAGGGCCATGGAGCCCTGCTGAGGACATGAGGCTTGTGTCTTTTATTCAGAAGAATGGTCATGAGAATTGGAGGTCTCTGCCTAAACAAGCAGGACTGTTGCGATGCGGGAAAAGTTGTCGATTGCGATGGATTAATTACCTAAGGCCTGACGTTAAGCGCGGAAACTTCAGTAAGGAGGAAGAGGATGCCATAATCAAGCTCCATCAGACCTTGGGCAACAAGTGGTCAAAGATTGCGTCGCATTTTCCAGGCAGGACGGATAATGAGATCAAGAATGTATGGAACACTCATTTGAAGAAACGTCTGGTGGCTCAAAAGAATGATAAACTCTATTCATCTTCATCAAATACTAATCCAATTAGCAATAGTCCTAACCCTAGCCCTAGTACTAACAATGAGCCCAAGGAGCCATCAAGCTCTTCTACTAACTCATCACCAAACATTGAAACACAAGTGGACTCGATAATTTTCGACTTTGTAGGAACTTATGGCATGCTAGACGAGGTGAACAAGCCGGGCGAAGAACTGGAAATCCCATTGGAGACCGACACCAGTTTTTGGGAGATGTTGGACAGCCTAGGCTCATTCCAGTACAACAATGAAGTAGAGGGAAGCCAGAGCTCTATCATTATTGCAGACCATGAACAAGGAAATGATAATGGAGATGCAGCCCATGAGAGCAGGAGTTGGCTGAGGTACATAGAGAATGAACTTGGACTAGAGGAAACAAGTGATGAAACCATGGAAACATGTACTAAAATTCAGCTTAATGGAGATGAGCAGCCAGCCAGTGAGATCATTAGTTTCCTAGAGGATGACGGTGGGAAGCTAGAAGACAATCCAAGTATTATAATTTTAATTTCTTCTAATCTATGGTATGATGATGACCCCTTTGTATATTTGAAAATTAATCTCTTGAATTTTATGAAGTTGGAGAGTGGGTTGGTGAAATTCTCCACTTACCATCATAGAACCATACAATTTTGTGACACCCAATTTCTAAGTGTCCCCACACTTGGAAAGAATGAGAGGATAAAAGTATATTGA 1095 42.56 MGRGRAPCCDKSKVKRGPWSPAEDMRLVSFIQKNGHENWRSLPKQAGLLRCGKSCRLRWINYLRPDVKRGNFSKEEEDAIIKLHQTLGNKWSKIASHFPGRTDNEIKNVWNTHLKKRLVAQKNDKLYSSSSNTNPISNSPNPSPSTNNEPKEPSSSSTNSSPNIETQVDSIIFDFVGTYGMLDEVNKPGEELEIPLETDTSFWEMLDSLGSFQYNNEVEGSQSSIIIADHEQGNDNGDAAHESRSWLRYIENELGLEETSDETMETCTKIQLNGDEQPASEIISFLEDDGGKLEDNPSIIILISSNLWYDDDPFVYLKINLLNFMKLESGLVKFSTYHHRTIQFCDTQFLSVPTLGKNERIKVY* 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 22358834 22361459 + Vvi19g1112 Vvi19g1112 782611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1112 364 SMART sant 68 116 IPR001005 -
Vvi19g1112 364 SMART sant 15 65 IPR001005 -
Vvi19g1112 364 Gene3D - 16 68 - -
Vvi19g1112 364 PANTHER - 1 146 - -
Vvi19g1112 364 PANTHER - 162 270 - -
Vvi19g1112 364 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Vvi19g1112 364 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 162 270 - -
Vvi19g1112 364 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 146 - -
Vvi19g1112 364 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Vvi19g1112 364 CDD SANT 71 114 IPR001005 -
Vvi19g1112 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Vvi19g1112 364 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Vvi19g1112 364 CDD SANT 18 63 IPR001005 -
Vvi19g1112 364 Gene3D - 71 139 - -
Vvi19g1112 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Vvi19g1112 364 MobiDBLite consensus disorder prediction 124 164 - -
Vvi19g1112 364 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Vvi19g1112 364 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14394 PF00249 Myb_DNA-binding 4.30E-12 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1112 K09422 - vvi:100246160 535.413