Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1113 ATGGGGAGAAATATCGGGTCTGTCCGGTCCATTTTCATGCATGCCGACACCGCAGATTATTGTTTGATGGCTTTTGGTTTGCTCGGAGCCATCTGTGCTGGGCTTTACAGGCCGACACTTTTGTTTGTGGTCAACAAGATTATGAACAATATCGGCAGTGCCTCCACTTCCGGTGATGCCTTCTCCCATAAAATCAATCAGAATGCCCTGATACTGCTGTACATTGCTTGTGGGTCATGGGTGCCTTTTTTCCTTGAGGGTTATTGCTGGTCAAGAACTGCCGAGAGACAAGCTACAAGGATGAGAAGTAGATATATGAAAGCACTGTTGAGGCAGGACGTGGAGTATTTTGATTTGCATGTGACCGGCACAGCAGAGGCCATCAGTAGCGTCTCCGAGGATAGTCTCGTGATTCAAGACGTTATTAGCGAAAAGGTCCCAAACTTGTTGATAAACGCTGCATCTTTTGTAGGGTGCTACATAGTAGCTTTCGCTATGCTGTGGAGGCTAGCTATTGTAGGCGTTCCCTTTGTCGTTCTGCTTGTGATTCCTGGTTTCATATATGGACGTGCACTGATGAACCTGGCCAGGAAGATGAAGGAAGAGTACAGCAAGGCTGCCACAATAGCAGAGCAGGCCATCTCTTCTATAAGAACTGTTTACTCCTTCGTGGGAGAGAGAAAAACTCAGTCTGCCTTCTCTGCAGCTCTGCAAGGCCCCTTTAAATTGGGTCTGCGCCAGGGTGTGGCCAAGGGTTTGGCCATTGGCGGCAATGGGGTGGTTCTTGGAATATGGGCGTTCATGTGTTGGTACGGTAGTAGATTGGTGATGTATCATGGCGCTCAGGGAGGAACCGTTTTTGCTACTGGGGCTGTCATGGCCATTGGTGGATTATCACTAGGCCCCGGATTATCCAACCTTCAGTACTTGTCGGAAGCATGCACCGCGGGAGAGCGAATAATGGAGGTGATAAAAAGGGTCCCAAAGATAGATTCTGACAACATGGAAGGCCAAACCTTGGAAAACCTGTGTGGGGAAGTGGAATTCAAGCACGTTCAATTTGCATATCCGTCATCCCCAGAGATAACAATCTTTAAAGATTTCAGCCTCAAAATCCCGACGGGCAAAAAGGTGGCGTTGGTGGGTAGCAGCGGGTCGGGAAAGTCCACAGCAGTAGCTTTGCTGCAGAGGTTTTATGATCCCCTTGAGAACATACTTTTCGGCAAGGAAGACGCTACCATGGAAGAAAGAGGAGTTCAAATGTCCGGAGGGCAGAAGCAGAGAATCGCCATTGCAAGAGCAGTCATCAAAGCCCCGCGAATACTCCTCCTAGACGAGGCAACCAGCGCTCTTGATTCCGAGTCCGAGCGAGTGGTCCAAGAGGCGCTTGACAGCGCTGCCCTTGGCCGCACAACCATCATCATCGCCCACCGCCTGTCCACCATCCGTAATGCCGACATTATTGCTGTGGTACAGGATGGTCACATAGTAGAGACCGGCCCTCATGACCAACTCATTCAAAACCCCGCTGGACTCTACACTTCCCTGGTTCGCCTCCAGCAAGCCGATCAGCCATGGAAGGCTGTGACATCCTTAACCCCCGCCACCTCCCTACTGCTCGCAATGAACTATCCTGAGTGGAAGGAAGCCAGCATAGGATGTTTGAGCGCGGTTTTGTCCGGTGCGATTCAGCCGCTCTACGCAGAGATGATGTTCTCCAAGATTCTTATGGGTGATCGAATGTCACTTATCGCAATCAAGGCCCAAGAAGAAAGCGGCAAGCTCGCCGCTGAAGCTGCCTGGTTCTCAGGAATAGCTTTAGGAATTTCCCAAAGTCTCTTGTCATGTAGTTGGGCTCTTGACTTCTGGTACGGAAGCATGACCAATGACCTTGCCAAGGGCATCGATGCTATTCGCTCCGGTTTCTCAATCGACATAGACCCTGGGAAATCAACTGCATTGGTAGGAGAGAGTGGGTCAGGCAAATCAACCATCATTGGGTTGATAGAAAGATTCTACGATCCCCTCAAAGGAATTGTCAAGCTTGATGGAAAAGATATAAGGACCTACCACCTCAGGCATGGCTATGATACATGGTGTGCTAGTAAAGGGCTACAATTGTCTGGTGGGCAGAGGCAACGGATTGCTATAGCTCGGGCCATATTGAAAAACGCAGCAATATTGTTACTTGATGAAGCAACGAGCGCACTAGATAGCCAATCAGAGACAGTGGTGCAGGAAGCTTTAGAGCGTGTGACAATGGGACGGACGAGCGTGGTGGTGGCCCATAGGTTGAGTACCATTCAGAATTGTGATTTGATAGCCGTTGTGGATAAAGGAAACGTGGTGGAGAAGGGGACCCACACATCCTTGTTGGAAAAAGGCCCTACTGGGACCTACTACTCACTGGTGAACCGACAAAGGGGCCTGATATCACCAACATAG 2445 49.86 MGRNIGSVRSIFMHADTADYCLMAFGLLGAICAGLYRPTLLFVVNKIMNNIGSASTSGDAFSHKINQNALILLYIACGSWVPFFLEGYCWSRTAERQATRMRSRYMKALLRQDVEYFDLHVTGTAEAISSVSEDSLVIQDVISEKVPNLLINAASFVGCYIVAFAMLWRLAIVGVPFVVLLVIPGFIYGRALMNLARKMKEEYSKAATIAEQAISSIRTVYSFVGERKTQSAFSAALQGPFKLGLRQGVAKGLAIGGNGVVLGIWAFMCWYGSRLVMYHGAQGGTVFATGAVMAIGGLSLGPGLSNLQYLSEACTAGERIMEVIKRVPKIDSDNMEGQTLENLCGEVEFKHVQFAYPSSPEITIFKDFSLKIPTGKKVALVGSSGSGKSTAVALLQRFYDPLENILFGKEDATMEERGVQMSGGQKQRIAIARAVIKAPRILLLDEATSALDSESERVVQEALDSAALGRTTIIIAHRLSTIRNADIIAVVQDGHIVETGPHDQLIQNPAGLYTSLVRLQQADQPWKAVTSLTPATSLLLAMNYPEWKEASIGCLSAVLSGAIQPLYAEMMFSKILMGDRMSLIAIKAQEESGKLAAEAAWFSGIALGISQSLLSCSWALDFWYGSMTNDLAKGIDAIRSGFSIDIDPGKSTALVGESGSGKSTIIGLIERFYDPLKGIVKLDGKDIRTYHLRHGYDTWCASKGLQLSGGQRQRIAIARAILKNAAILLLDEATSALDSQSETVVQEALERVTMGRTSVVVAHRLSTIQNCDLIAVVDKGNVVEKGTHTSLLEKGPTGTYYSLVNRQRGLISPT* 815
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 22379271 22383673 - Vvi19g1113 Vvi19g1113 782612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1113 814 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 8 402 - -
Vvi19g1113 814 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 637 693 - -
Vvi19g1113 814 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 413 523 - -
Vvi19g1113 814 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 581 626 - -
Vvi19g1113 814 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 692 810 - -
Vvi19g1113 814 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 535 577 - -
Vvi19g1113 814 SMART AAA_5 648 767 IPR003593 -
Vvi19g1113 814 SMART AAA_5 374 495 IPR003593 -
Vvi19g1113 814 Gene3D ABC transporter type 1, transmembrane domain 531 576 IPR036640 GO:0005524|GO:0016021
Vvi19g1113 814 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 339 520 IPR027417 -
Vvi19g1113 814 ProSitePatterns ABC transporters family signature. 707 721 IPR017871 GO:0005524
Vvi19g1113 814 SUPERFAMILY ABC transporter transmembrane region 20 331 IPR036640 GO:0005524|GO:0016021
Vvi19g1113 814 Gene3D - 414 530 IPR027417 -
Vvi19g1113 814 Gene3D - 693 808 IPR027417 -
Vvi19g1113 814 Gene3D - 641 692 IPR027417 -
Vvi19g1113 814 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 24 312 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi19g1113 814 CDD ABC_6TM_Pgp_ABCB1_D1_like 23 320 - -
Vvi19g1113 814 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 347 804 IPR003439 GO:0005524
Vvi19g1113 814 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 413 523 IPR039421 -
Vvi19g1113 814 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 8 402 IPR039421 -
Vvi19g1113 814 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 581 626 IPR039421 -
Vvi19g1113 814 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 637 693 IPR039421 -
Vvi19g1113 814 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 535 577 IPR039421 -
Vvi19g1113 814 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 692 810 IPR039421 -
Vvi19g1113 814 ProSitePatterns ABC transporters family signature. 421 435 IPR017871 GO:0005524
Vvi19g1113 814 Gene3D ABC transporter type 1, transmembrane domain 6 358 IPR036640 GO:0005524|GO:0016021
Vvi19g1113 814 Gene3D - 359 408 IPR027417 -
Vvi19g1113 814 Pfam ABC transporter 697 735 IPR003439 GO:0005524
Vvi19g1113 814 Pfam ABC transporter 410 449 IPR003439 GO:0005524
Vvi19g1113 814 Pfam ABC transporter 642 689 IPR003439 GO:0005524
Vvi19g1113 814 Pfam ABC transporter transmembrane region 24 290 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi19g1113 814 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 638 807 IPR027417 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1113 K05658 - vvi:100259876 1047.73