Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1113 ATGGGGAGAAATATCGGGTCTGTCCGGTCCATTTTCATGCATGCCGACACCGCAGATTATTGTTTGATGGCTTTTGGTTTGCTCGGAGCCATCTGTGCTGGGCTTTACAGGCCGACACTTTTGTTTGTGGTCAACAAGATTATGAACAATATCGGCAGTGCCTCCACTTCCGGTGATGCCTTCTCCCATAAAATCAATCAGAATGCCCTGATACTGCTGTACATTGCTTGTGGGTCATGGGTGCCTTTTTTCCTTGAGGGTTATTGCTGGTCAAGAACTGCCGAGAGACAAGCTACAAGGATGAGAAGTAGATATATGAAAGCACTGTTGAGGCAGGACGTGGAGTATTTTGATTTGCATGTGACCGGCACAGCAGAGGCCATCAGTAGCGTCTCCGAGGATAGTCTCGTGATTCAAGACGTTATTAGCGAAAAGGTCCCAAACTTGTTGATAAACGCTGCATCTTTTGTAGGGTGCTACATAGTAGCTTTCGCTATGCTGTGGAGGCTAGCTATTGTAGGCGTTCCCTTTGTCGTTCTGCTTGTGATTCCTGGTTTCATATATGGACGTGCACTGATGAACCTGGCCAGGAAGATGAAGGAAGAGTACAGCAAGGCTGCCACAATAGCAGAGCAGGCCATCTCTTCTATAAGAACTGTTTACTCCTTCGTGGGAGAGAGAAAAACTCAGTCTGCCTTCTCTGCAGCTCTGCAAGGCCCCTTTAAATTGGGTCTGCGCCAGGGTGTGGCCAAGGGTTTGGCCATTGGCGGCAATGGGGTGGTTCTTGGAATATGGGCGTTCATGTGTTGGTACGGTAGTAGATTGGTGATGTATCATGGCGCTCAGGGAGGAACCGTTTTTGCTACTGGGGCTGTCATGGCCATTGGTGGATTATCACTAGGCCCCGGATTATCCAACCTTCAGTACTTGTCGGAAGCATGCACCGCGGGAGAGCGAATAATGGAGGTGATAAAAAGGGTCCCAAAGATAGATTCTGACAACATGGAAGGCCAAACCTTGGAAAACCTGTGTGGGGAAGTGGAATTCAAGCACGTTCAATTTGCATATCCGTCATCCCCAGAGATAACAATCTTTAAAGATTTCAGCCTCAAAATCCCGACGGGCAAAAAGGTGGCGTTGGTGGGTAGCAGCGGGTCGGGAAAGTCCACAGCAGTAGCTTTGCTGCAGAGGTTTTATGATCCCCTTGAGAACATACTTTTCGGCAAGGAAGACGCTACCATGGAAGAAAGAGGAGTTCAAATGTCCGGAGGGCAGAAGCAGAGAATCGCCATTGCAAGAGCAGTCATCAAAGCCCCGCGAATACTCCTCCTAGACGAGGCAACCAGCGCTCTTGATTCCGAGTCCGAGCGAGTGGTCCAAGAGGCGCTTGACAGCGCTGCCCTTGGCCGCACAACCATCATCATCGCCCACCGCCTGTCCACCATCCGTAATGCCGACATTATTGCTGTGGTACAGGATGGTCACATAGTAGAGACCGGCCCTCATGACCAACTCATTCAAAACCCCGCTGGACTCTACACTTCCCTGGTTCGCCTCCAGCAAGCCGATCAGCCATGGAAGGCTGTGACATCCTTAACCCCCGCCACCTCCCTACTGCTCGCAATGAACTATCCTGAGTGGAAGGAAGCCAGCATAGGATGTTTGAGCGCGGTTTTGTCCGGTGCGATTCAGCCGCTCTACGCAGAGATGATGTTCTCCAAGATTCTTATGGGTGATCGAATGTCACTTATCGCAATCAAGGCCCAAGAAGAAAGCGGCAAGCTCGCCGCTGAAGCTGCCTGGTTCTCAGGAATAGCTTTAGGAATTTCCCAAAGTCTCTTGTCATGTAGTTGGGCTCTTGACTTCTGGTACGGAAGCATGACCAATGACCTTGCCAAGGGCATCGATGCTATTCGCTCCGGTTTCTCAATCGACATAGACCCTGGGAAATCAACTGCATTGGTAGGAGAGAGTGGGTCAGGCAAATCAACCATCATTGGGTTGATAGAAAGATTCTACGATCCCCTCAAAGGAATTGTCAAGCTTGATGGAAAAGATATAAGGACCTACCACCTCAGGCATGGCTATGATACATGGTGTGCTAGTAAAGGGCTACAATTGTCTGGTGGGCAGAGGCAACGGATTGCTATAGCTCGGGCCATATTGAAAAACGCAGCAATATTGTTACTTGATGAAGCAACGAGCGCACTAGATAGCCAATCAGAGACAGTGGTGCAGGAAGCTTTAGAGCGTGTGACAATGGGACGGACGAGCGTGGTGGTGGCCCATAGGTTGAGTACCATTCAGAATTGTGATTTGATAGCCGTTGTGGATAAAGGAAACGTGGTGGAGAAGGGGACCCACACATCCTTGTTGGAAAAAGGCCCTACTGGGACCTACTACTCACTGGTGAACCGACAAAGGGGCCTGATATCACCAACATAG 2445 49.86 MGRNIGSVRSIFMHADTADYCLMAFGLLGAICAGLYRPTLLFVVNKIMNNIGSASTSGDAFSHKINQNALILLYIACGSWVPFFLEGYCWSRTAERQATRMRSRYMKALLRQDVEYFDLHVTGTAEAISSVSEDSLVIQDVISEKVPNLLINAASFVGCYIVAFAMLWRLAIVGVPFVVLLVIPGFIYGRALMNLARKMKEEYSKAATIAEQAISSIRTVYSFVGERKTQSAFSAALQGPFKLGLRQGVAKGLAIGGNGVVLGIWAFMCWYGSRLVMYHGAQGGTVFATGAVMAIGGLSLGPGLSNLQYLSEACTAGERIMEVIKRVPKIDSDNMEGQTLENLCGEVEFKHVQFAYPSSPEITIFKDFSLKIPTGKKVALVGSSGSGKSTAVALLQRFYDPLENILFGKEDATMEERGVQMSGGQKQRIAIARAVIKAPRILLLDEATSALDSESERVVQEALDSAALGRTTIIIAHRLSTIRNADIIAVVQDGHIVETGPHDQLIQNPAGLYTSLVRLQQADQPWKAVTSLTPATSLLLAMNYPEWKEASIGCLSAVLSGAIQPLYAEMMFSKILMGDRMSLIAIKAQEESGKLAAEAAWFSGIALGISQSLLSCSWALDFWYGSMTNDLAKGIDAIRSGFSIDIDPGKSTALVGESGSGKSTIIGLIERFYDPLKGIVKLDGKDIRTYHLRHGYDTWCASKGLQLSGGQRQRIAIARAILKNAAILLLDEATSALDSQSETVVQEALERVTMGRTSVVVAHRLSTIQNCDLIAVVDKGNVVEKGTHTSLLEKGPTGTYYSLVNRQRGLISPT* 815
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 22379271 22383673 - Vvi19g1113 Vvi19g1113 782612

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1113 814 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 8 402 - -
Vvi19g1113 814 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 637 693 - -
Vvi19g1113 814 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 413 523 - -
Vvi19g1113 814 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 581 626 - -
Vvi19g1113 814 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 692 810 - -
Vvi19g1113 814 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 535 577 - -
Vvi19g1113 814 SMART AAA_5 648 767 IPR003593 -
Vvi19g1113 814 SMART AAA_5 374 495 IPR003593 -
Vvi19g1113 814 Gene3D ABC transporter type 1, transmembrane domain 531 576 IPR036640 GO:0005524|GO:0016021
Vvi19g1113 814 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 339 520 IPR027417 -
Vvi19g1113 814 ProSitePatterns ABC transporters family signature. 707 721 IPR017871 GO:0005524
Vvi19g1113 814 SUPERFAMILY ABC transporter transmembrane region 20 331 IPR036640 GO:0005524|GO:0016021
Vvi19g1113 814 Gene3D - 414 530 IPR027417 -
Vvi19g1113 814 Gene3D - 693 808 IPR027417 -
Vvi19g1113 814 Gene3D - 641 692 IPR027417 -
Vvi19g1113 814 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 24 312 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi19g1113 814 CDD ABC_6TM_Pgp_ABCB1_D1_like 23 320 - -
Vvi19g1113 814 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 347 804 IPR003439 GO:0005524
Vvi19g1113 814 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 413 523 IPR039421 -
Vvi19g1113 814 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 8 402 IPR039421 -
Vvi19g1113 814 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 581 626 IPR039421 -
Vvi19g1113 814 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 637 693 IPR039421 -
Vvi19g1113 814 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 535 577 IPR039421 -
Vvi19g1113 814 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 692 810 IPR039421 -
Vvi19g1113 814 ProSitePatterns ABC transporters family signature. 421 435 IPR017871 GO:0005524
Vvi19g1113 814 Gene3D ABC transporter type 1, transmembrane domain 6 358 IPR036640 GO:0005524|GO:0016021
Vvi19g1113 814 Gene3D - 359 408 IPR027417 -
Vvi19g1113 814 Pfam ABC transporter 697 735 IPR003439 GO:0005524
Vvi19g1113 814 Pfam ABC transporter 410 449 IPR003439 GO:0005524
Vvi19g1113 814 Pfam ABC transporter 642 689 IPR003439 GO:0005524
Vvi19g1113 814 Pfam ABC transporter transmembrane region 24 290 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi19g1113 814 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 638 807 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1113 K05658 ABCB1, CD243; ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:7.6.2.2] - vvi:100259876 1047.73
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1113 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000338 3 4 5 4 3 4 2 4 4 4 4 4 7 4 4 8 4 5 4 4 4 4 6 4 4 4 7 6 4 8 136