Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1115 ATGATTTATCCATATGAAAGTGCTTCAAGACTTTCTTTATATATAAGGGACTCTAATTATTGTTATAATCTCAATCACCAAATCACTAGGCCCCGGATTATCCAACCTGCAATACTTGTTCGAAGCCTGCACTACGGGAGAGTGAATAATGGAGGTGATAAAAAGGGTACCAAAAACAGATTCTGCCAACATGGAAAGCCAAACCCTGAAAACCTGTGTGGGAAAGTGGACTTCAAGCACTTAAAAGTTTTGACTTTAGAGAGGAAAAAAATGATGAAAGATGCCTTGAGAATCCCGGTAAAGAAAAAAGTGGTGTTGGTCAGAGGCAGCAGGTCAGGAAAGTCTACAGTAGTAGCTTTATTGCAGAGGTTTTATGATCCACTTGGTGGGAAGATTCTTTTGAATGGGTGGGCCATTTATAAGCTACAACTCAAGTATACAGGATGGCCAGGTCATGGAGATGGCTCTCACAACCAACTCATGCAAAACCCCAACGAACTCTACACTTCTCTCGTCCGCCTCCAGCAAACCGATCAGCCATTGAAGGTTATGACCTCCTCAACCCCCACCATCTCCCTCGATCTCCACAACAACAACAACGACTCTACTTCCCTCAACTCCTCTATACCCAACATGCGTGCAGGAGAAGAAGTTGTGTCATCCTCATATATTCCAGAGATGCAAGAGCAAACCAAAACTTATTATCTATGTTTTGTTGCATTGTCTGTGTTCTCACTATTGGTAAATCTCAACCAACATTACAATTTTGCAGTAATGAGAGAGAATTTGACAAAGAGAGAGAGAGATGGTGTTTTCAAAGATACTGAACTCACCAAAGATGCGATTGTGGTAAGATCATTGGTGGGTGATCGTATGTCGCTTCTCGTCCAAACCTTGTCAGTTGTGATCATCTCTGGTACAATGGGTCTGGTTATCTCATGGAGACTGGTTGTGGTAATGATTGCAGTTCAACCCATCATGATTATCTCCCACTACACTCGACTGGTGCTGCTCAAAAGCATGTCTGCTAAGGCCATCAAGGCCCAAGAAGAAAGTAGCAAGCTTGCCACTAAATTTGTCTCCAACCTTCGCACCATAACCGTCTTCTCCTTCCAAGCCCGAATTCTCAAAATGCTCATGATAGCCCAACAAGGTCCCCTAAAGGAGAGTGTTCGTCAAGCTTGGATAGCTGGAATAGACCTAGGAACCTCCCAAAGCCTTAAAGGCTATCAATGTGACTTCGGCTTCTCAATCAACACAGACGCTAAGAAATCCACTACATTGGTGGGACATAGTGGATCTAGCAAATCAACCATCAATGGATTAATAAAAAGATTCTATGATCCCCTCAAAGGAATCGTAAAGTTGGATGGAAAAGATATAAAAATTTTCCACCTCAGGGTCCTACGGAAACACATTGCACTAGTACACCAAGAACCCATACTATTCGTAGCACCATAA 1461 42.64 MIYPYESASRLSLYIRDSNYCYNLNHQITRPRIIQPAILVRSLHYGRVNNGGDKKGTKNRFCQHGKPNPENLCGKVDFKHLKVLTLERKKMMKDALRIPVKKKVVLVRGSRSGKSTVVALLQRFYDPLGGKILLNGWAIYKLQLKYTGWPGHGDGSHNQLMQNPNELYTSLVRLQQTDQPLKVMTSSTPTISLDLHNNNNDSTSLNSSIPNMRAGEEVVSSSYIPEMQEQTKTYYLCFVALSVFSLLVNLNQHYNFAVMRENLTKRERDGVFKDTELTKDAIVVRSLVGDRMSLLVQTLSVVIISGTMGLVISWRLVVVMIAVQPIMIISHYTRLVLLKSMSAKAIKAQEESSKLATKFVSNLRTITVFSFQARILKMLMIAQQGPLKESVRQAWIAGIDLGTSQSLKGYQCDFGFSINTDAKKSTTLVGHSGSSKSTINGLIKRFYDPLKGIVKLDGKDIKIFHLRVLRKHIALVHQEPILFVAP* 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 22400679 22412010 + Vvi19g1115 Vvi19g1115 782614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1115 486 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 155 408 IPR039421 -
Vvi19g1115 486 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 72 146 IPR039421 -
Vvi19g1115 486 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 415 484 IPR039421 -
Vvi19g1115 486 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 236 407 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi19g1115 486 Pfam ABC transporter transmembrane region 276 406 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi19g1115 486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 415 483 IPR027417 -
Vvi19g1115 486 Pfam ABC transporter 418 483 IPR003439 GO:0005524
Vvi19g1115 486 Gene3D ABC transporter type 1, transmembrane domain 177 408 IPR036640 GO:0005524|GO:0016021
Vvi19g1115 486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 74 146 IPR027417 -
Vvi19g1115 486 PANTHER ABC TRANSPORTER B FAMILY MEMBER 15 415 484 - -
Vvi19g1115 486 PANTHER ABC TRANSPORTER B FAMILY MEMBER 15 155 408 - -
Vvi19g1115 486 PANTHER ABC TRANSPORTER B FAMILY MEMBER 15 72 146 - -
Vvi19g1115 486 SUPERFAMILY ABC transporter transmembrane region 230 404 IPR036640 GO:0005524|GO:0016021
Vvi19g1115 486 Gene3D - 154 176 IPR027417 -
Vvi19g1115 486 Gene3D - 416 483 IPR027417 -
Vvi19g1115 486 Gene3D - 74 145 IPR027417 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1115 K05658 - vvi:100259876 281.952