Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1115 ATGATTTATCCATATGAAAGTGCTTCAAGACTTTCTTTATATATAAGGGACTCTAATTATTGTTATAATCTCAATCACCAAATCACTAGGCCCCGGATTATCCAACCTGCAATACTTGTTCGAAGCCTGCACTACGGGAGAGTGAATAATGGAGGTGATAAAAAGGGTACCAAAAACAGATTCTGCCAACATGGAAAGCCAAACCCTGAAAACCTGTGTGGGAAAGTGGACTTCAAGCACTTAAAAGTTTTGACTTTAGAGAGGAAAAAAATGATGAAAGATGCCTTGAGAATCCCGGTAAAGAAAAAAGTGGTGTTGGTCAGAGGCAGCAGGTCAGGAAAGTCTACAGTAGTAGCTTTATTGCAGAGGTTTTATGATCCACTTGGTGGGAAGATTCTTTTGAATGGGTGGGCCATTTATAAGCTACAACTCAAGTATACAGGATGGCCAGGTCATGGAGATGGCTCTCACAACCAACTCATGCAAAACCCCAACGAACTCTACACTTCTCTCGTCCGCCTCCAGCAAACCGATCAGCCATTGAAGGTTATGACCTCCTCAACCCCCACCATCTCCCTCGATCTCCACAACAACAACAACGACTCTACTTCCCTCAACTCCTCTATACCCAACATGCGTGCAGGAGAAGAAGTTGTGTCATCCTCATATATTCCAGAGATGCAAGAGCAAACCAAAACTTATTATCTATGTTTTGTTGCATTGTCTGTGTTCTCACTATTGGTAAATCTCAACCAACATTACAATTTTGCAGTAATGAGAGAGAATTTGACAAAGAGAGAGAGAGATGGTGTTTTCAAAGATACTGAACTCACCAAAGATGCGATTGTGGTAAGATCATTGGTGGGTGATCGTATGTCGCTTCTCGTCCAAACCTTGTCAGTTGTGATCATCTCTGGTACAATGGGTCTGGTTATCTCATGGAGACTGGTTGTGGTAATGATTGCAGTTCAACCCATCATGATTATCTCCCACTACACTCGACTGGTGCTGCTCAAAAGCATGTCTGCTAAGGCCATCAAGGCCCAAGAAGAAAGTAGCAAGCTTGCCACTAAATTTGTCTCCAACCTTCGCACCATAACCGTCTTCTCCTTCCAAGCCCGAATTCTCAAAATGCTCATGATAGCCCAACAAGGTCCCCTAAAGGAGAGTGTTCGTCAAGCTTGGATAGCTGGAATAGACCTAGGAACCTCCCAAAGCCTTAAAGGCTATCAATGTGACTTCGGCTTCTCAATCAACACAGACGCTAAGAAATCCACTACATTGGTGGGACATAGTGGATCTAGCAAATCAACCATCAATGGATTAATAAAAAGATTCTATGATCCCCTCAAAGGAATCGTAAAGTTGGATGGAAAAGATATAAAAATTTTCCACCTCAGGGTCCTACGGAAACACATTGCACTAGTACACCAAGAACCCATACTATTCGTAGCACCATAA 1461 42.64 MIYPYESASRLSLYIRDSNYCYNLNHQITRPRIIQPAILVRSLHYGRVNNGGDKKGTKNRFCQHGKPNPENLCGKVDFKHLKVLTLERKKMMKDALRIPVKKKVVLVRGSRSGKSTVVALLQRFYDPLGGKILLNGWAIYKLQLKYTGWPGHGDGSHNQLMQNPNELYTSLVRLQQTDQPLKVMTSSTPTISLDLHNNNNDSTSLNSSIPNMRAGEEVVSSSYIPEMQEQTKTYYLCFVALSVFSLLVNLNQHYNFAVMRENLTKRERDGVFKDTELTKDAIVVRSLVGDRMSLLVQTLSVVIISGTMGLVISWRLVVVMIAVQPIMIISHYTRLVLLKSMSAKAIKAQEESSKLATKFVSNLRTITVFSFQARILKMLMIAQQGPLKESVRQAWIAGIDLGTSQSLKGYQCDFGFSINTDAKKSTTLVGHSGSSKSTINGLIKRFYDPLKGIVKLDGKDIKIFHLRVLRKHIALVHQEPILFVAP* 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 22400679 22412010 + Vvi19g1115 Vvi19g1115 782614

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1115 486 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 155 408 IPR039421 -
Vvi19g1115 486 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 72 146 IPR039421 -
Vvi19g1115 486 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 415 484 IPR039421 -
Vvi19g1115 486 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 236 407 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi19g1115 486 Pfam ABC transporter transmembrane region 276 406 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi19g1115 486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 415 483 IPR027417 -
Vvi19g1115 486 Pfam ABC transporter 418 483 IPR003439 GO:0005524
Vvi19g1115 486 Gene3D ABC transporter type 1, transmembrane domain 177 408 IPR036640 GO:0005524|GO:0016021
Vvi19g1115 486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 74 146 IPR027417 -
Vvi19g1115 486 PANTHER ABC TRANSPORTER B FAMILY MEMBER 15 415 484 - -
Vvi19g1115 486 PANTHER ABC TRANSPORTER B FAMILY MEMBER 15 155 408 - -
Vvi19g1115 486 PANTHER ABC TRANSPORTER B FAMILY MEMBER 15 72 146 - -
Vvi19g1115 486 SUPERFAMILY ABC transporter transmembrane region 230 404 IPR036640 GO:0005524|GO:0016021
Vvi19g1115 486 Gene3D - 154 176 IPR027417 -
Vvi19g1115 486 Gene3D - 416 483 IPR027417 -
Vvi19g1115 486 Gene3D - 74 145 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1115 K05658 ABCB1, CD243; ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:7.6.2.2] - vvi:100259876 281.952
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1115 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000338 3 4 5 4 3 4 2 4 4 4 4 4 7 4 4 8 4 5 4 4 4 4 6 4 4 4 7 6 4 8 136