Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1118 ATGGTGCTTGAATCGTTAGACCTCTCTTCGAACAAGCTCAGTGGGAGAATTCCAAGGGAGTTGACAAGTCTAACGTTTCTTGAAGTCCTAAATCTTTCAAAAAATCATCTCACTGGAGTCATTCCTCGAGGCAACCAATTTGATTCATTCACAAATAATTCATATAGTGGGAATATAGGATTATGTGGATTTCCCTTATCTAAGAAATGTGTAGTTGATGAAGCACCACAACCTCCCAAAGAAGAGGAGGTGGAATCTGATACTGGATTTGATTGGAAAGTCATATTGATGGGGTATGGCTGTGGACTAGTAGTTGGATTGTCTATTGGGTGCCTCGTCTTCTTAACAAGAAAGCCTAAATGGTTTGTAAGAATGATTGAAGGAGATAGACACAAGAAGGTTAGAAAGTCAACAAGGAGCACTTGTAGGCATGGAGCAAGAAGAAGTTAG 450 40.0 MVLESLDLSSNKLSGRIPRELTSLTFLEVLNLSKNHLTGVIPRGNQFDSFTNNSYSGNIGLCGFPLSKKCVVDEAPQPPKEEEVESDTGFDWKVILMGYGCGLVVGLSIGCLVFLTRKPKWFVRMIEGDRHKKVRKSTRSTCRHGARRS* 150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 22499712 22500162 - Vvi19g1118 Vvi19g1118 782617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1118 149 Pfam Leucine Rich Repeat 3 23 IPR001611 GO:0005515
Vvi19g1118 149 Pfam Leucine Rich Repeat 27 43 IPR001611 GO:0005515
Vvi19g1118 149 PRINTS Leucine-rich repeat signature 3 16 - -
Vvi19g1118 149 PRINTS Leucine-rich repeat signature 24 37 - -
Vvi19g1118 149 SUPERFAMILY L domain-like 3 67 - -
Vvi19g1118 149 Gene3D Ribonuclease Inhibitor 2 77 IPR032675 -
Vvi19g1118 149 PANTHER RECEPTOR-LIKE PROTEIN 2 3 124 - -
Vvi19g1118 149 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 3 124 IPR045273 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1118 - - vvi:100261089 290.426