Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1119 ATGTATCGAATCCTTTACTTCCTCTTCTTTCTCTCATATTCCCGAGTTATTTGTTTCTCTTTCTCTAATTCTACGAAGCTGTGTCCTCATCACCAGAATGTTGCTTTGCTTCGACTTAAGCAAACATTTTCCGTAGATGTTTCCGCTTCTTTTGCCAAGACAGACACTTGGAAGGAAGACACTGATTGTTGCTCATGGGATGGTGTCACATGCAATAGGGTTACAAGCCTTGTAATCGGGCTCGACCTTAGTTGCAGTGGCCTCTATGGCACCATTCATTCCAACAGCAGCCTCTTCCTCTTGCCTCATCTACGAAGGCTCAACCTTGCTTTCAATGATTTCAATAAGTCCTCTATTTCAGCTAAGTTTGGACAATTCCGGAGAATGACTCATCTCAACCTTTCTTTCTCTGGATTTTCAGGTGTAATTGCTCCAGAAATCTCCCACCTATCCAACTTGAGTAATTCCATTCTGTTGTTGGATCTTTCTTCAACAAATTTCAGTGGGGAGCTTCCTAGTTCAATAAGCATTCTAAAGTCTTTAGAAAGTTTGGATCTCTCTCACTGCAATTTTTCAGGGTCCATTCCCTTGTTCATAGCGTCACTTGACAATCTAACAGAACTTTCTTTCTTAGACCTTTCAAACAATAAGCTAGAAGGTGTCATTCCTTCTCATGTGAAGGAACTTTCAAGTCTATCCTCTGTCCATTTGTCCAATAACTTGTTCAATGGGACAATACCATCTTGGTTGTTTAGTCTACCATCATTGATAGAGTTAGATCTCAGTCATAATAAACTCAATGGTCATATTGATGAATTCCAATCCCCTTCATTGGAGTCCATTGATTTGAGTAATAATGAGTTAGATGGGCCAGTTCCAAGTTCCATCTTTGAACTTGTAAATCTTACATATCTCCAGCTTTCTTCAAATAACTTGGGGCCACTTCCATCATTGATTTGTGAAATGAGTTATATTGAAGTTTTAGATTTCTCCAATAACAACTTGAGTGGCTTAATTCCACAATGTTTGGGAAACTTCAGTAAGTCTTTCTCAGTTTTGGATTTGCGAATGAATCAACTTTATGGTACCATTCCTAAAACGTTTTCAAAGGGCAATCTTATCAGGAATCTTGACTTCAATGGAAATCAATTGGAAGGGCCTCTACTACGATCTTTGATCAATTGTAGAAGGTTGCAAGTTTTAGACCTTGGAAATAACAGAATAAATGATACATTCCCCCATTGGTTGGAAACTCTTCCGGAGTTACAAGTTTTGATCTTGCGTTCAAATAGGTTCCATGGTCACGTAAGGGGTTCAAATTTCCAATTTCCATTTCCCAAGTTACGAATAATGGATCTCTCACGCAATGGTTTCTCTGCCAGTTTATCGAAAATATATTTGAAGAATTTCAAGGCAATGATGAATGCGACTGAGGATAAAATGGAATTAAAATTTATGGGCGAATACTCTTATCGAGATTCAATAATGGTAACAATCAAAGGATTTGATTTTGAATTTGTAAGTATCTTGTTTACTTTCACAATAATTGATTTGTCAAGCAATAGATTCCAAGGAGACATTCCAGATTTCATTGGTAGTCTTAGTTCACTTCGAGAACTCAACTTGTCTCATAACAACATTACAGGGCATATTCCATAA 1659 37.67 MYRILYFLFFLSYSRVICFSFSNSTKLCPHHQNVALLRLKQTFSVDVSASFAKTDTWKEDTDCCSWDGVTCNRVTSLVIGLDLSCSGLYGTIHSNSSLFLLPHLRRLNLAFNDFNKSSISAKFGQFRRMTHLNLSFSGFSGVIAPEISHLSNLSNSILLLDLSSTNFSGELPSSISILKSLESLDLSHCNFSGSIPLFIASLDNLTELSFLDLSNNKLEGVIPSHVKELSSLSSVHLSNNLFNGTIPSWLFSLPSLIELDLSHNKLNGHIDEFQSPSLESIDLSNNELDGPVPSSIFELVNLTYLQLSSNNLGPLPSLICEMSYIEVLDFSNNNLSGLIPQCLGNFSKSFSVLDLRMNQLYGTIPKTFSKGNLIRNLDFNGNQLEGPLLRSLINCRRLQVLDLGNNRINDTFPHWLETLPELQVLILRSNRFHGHVRGSNFQFPFPKLRIMDLSRNGFSASLSKIYLKNFKAMMNATEDKMELKFMGEYSYRDSIMVTIKGFDFEFVSILFTFTIIDLSSNRFQGDIPDFIGSLSSLRELNLSHNNITGHIP* 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 22500177 22502622 - Vvi19g1119 Vvi19g1119 782618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1119 552 Pfam Leucine Rich repeat 535 549 IPR001611 GO:0005515
Vvi19g1119 552 Pfam Leucine Rich repeat 102 117 IPR001611 GO:0005515
Vvi19g1119 552 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 11 312 - -
Vvi19g1119 552 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 157 552 - -
Vvi19g1119 552 Gene3D Ribonuclease Inhibitor 26 120 IPR032675 -
Vvi19g1119 552 ProSiteProfiles Leucine-rich repeat profile. 301 322 IPR001611 GO:0005515
Vvi19g1119 552 SUPERFAMILY L domain-like 160 552 - -
Vvi19g1119 552 SMART LRR_typ_2 205 225 IPR003591 -
Vvi19g1119 552 SMART LRR_typ_2 445 468 IPR003591 -
Vvi19g1119 552 SMART LRR_typ_2 419 442 IPR003591 -
Vvi19g1119 552 SMART LRR_typ_2 299 322 IPR003591 -
Vvi19g1119 552 SMART LRR_typ_2 229 253 IPR003591 -
Vvi19g1119 552 SMART LRR_typ_2 178 202 IPR003591 -
Vvi19g1119 552 SMART LRR_typ_2 101 126 IPR003591 -
Vvi19g1119 552 ProSiteProfiles Leucine-rich repeat profile. 536 552 IPR001611 GO:0005515
Vvi19g1119 552 Pfam Leucine rich repeat 207 266 IPR001611 GO:0005515
Vvi19g1119 552 Pfam Leucine rich repeat 394 432 IPR001611 GO:0005515
Vvi19g1119 552 Gene3D Ribonuclease Inhibitor 121 207 IPR032675 -
Vvi19g1119 552 SUPERFAMILY L domain-like 81 209 - -
Vvi19g1119 552 Gene3D Ribonuclease Inhibitor 208 274 IPR032675 -
Vvi19g1119 552 PRINTS Leucine-rich repeat signature 208 221 - -
Vvi19g1119 552 PRINTS Leucine-rich repeat signature 253 266 - -
Vvi19g1119 552 Pfam Leucine Rich Repeat 180 199 IPR001611 GO:0005515
Vvi19g1119 552 Pfam Leucine Rich Repeat 326 346 IPR001611 GO:0005515
Vvi19g1119 552 Gene3D Ribonuclease Inhibitor 275 552 IPR032675 -
Vvi19g1119 552 Pfam Leucine rich repeat N-terminal domain 32 72 IPR013210 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1119 - - vri:117908287 528.865