Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1119 ATGTATCGAATCCTTTACTTCCTCTTCTTTCTCTCATATTCCCGAGTTATTTGTTTCTCTTTCTCTAATTCTACGAAGCTGTGTCCTCATCACCAGAATGTTGCTTTGCTTCGACTTAAGCAAACATTTTCCGTAGATGTTTCCGCTTCTTTTGCCAAGACAGACACTTGGAAGGAAGACACTGATTGTTGCTCATGGGATGGTGTCACATGCAATAGGGTTACAAGCCTTGTAATCGGGCTCGACCTTAGTTGCAGTGGCCTCTATGGCACCATTCATTCCAACAGCAGCCTCTTCCTCTTGCCTCATCTACGAAGGCTCAACCTTGCTTTCAATGATTTCAATAAGTCCTCTATTTCAGCTAAGTTTGGACAATTCCGGAGAATGACTCATCTCAACCTTTCTTTCTCTGGATTTTCAGGTGTAATTGCTCCAGAAATCTCCCACCTATCCAACTTGAGTAATTCCATTCTGTTGTTGGATCTTTCTTCAACAAATTTCAGTGGGGAGCTTCCTAGTTCAATAAGCATTCTAAAGTCTTTAGAAAGTTTGGATCTCTCTCACTGCAATTTTTCAGGGTCCATTCCCTTGTTCATAGCGTCACTTGACAATCTAACAGAACTTTCTTTCTTAGACCTTTCAAACAATAAGCTAGAAGGTGTCATTCCTTCTCATGTGAAGGAACTTTCAAGTCTATCCTCTGTCCATTTGTCCAATAACTTGTTCAATGGGACAATACCATCTTGGTTGTTTAGTCTACCATCATTGATAGAGTTAGATCTCAGTCATAATAAACTCAATGGTCATATTGATGAATTCCAATCCCCTTCATTGGAGTCCATTGATTTGAGTAATAATGAGTTAGATGGGCCAGTTCCAAGTTCCATCTTTGAACTTGTAAATCTTACATATCTCCAGCTTTCTTCAAATAACTTGGGGCCACTTCCATCATTGATTTGTGAAATGAGTTATATTGAAGTTTTAGATTTCTCCAATAACAACTTGAGTGGCTTAATTCCACAATGTTTGGGAAACTTCAGTAAGTCTTTCTCAGTTTTGGATTTGCGAATGAATCAACTTTATGGTACCATTCCTAAAACGTTTTCAAAGGGCAATCTTATCAGGAATCTTGACTTCAATGGAAATCAATTGGAAGGGCCTCTACTACGATCTTTGATCAATTGTAGAAGGTTGCAAGTTTTAGACCTTGGAAATAACAGAATAAATGATACATTCCCCCATTGGTTGGAAACTCTTCCGGAGTTACAAGTTTTGATCTTGCGTTCAAATAGGTTCCATGGTCACGTAAGGGGTTCAAATTTCCAATTTCCATTTCCCAAGTTACGAATAATGGATCTCTCACGCAATGGTTTCTCTGCCAGTTTATCGAAAATATATTTGAAGAATTTCAAGGCAATGATGAATGCGACTGAGGATAAAATGGAATTAAAATTTATGGGCGAATACTCTTATCGAGATTCAATAATGGTAACAATCAAAGGATTTGATTTTGAATTTGTAAGTATCTTGTTTACTTTCACAATAATTGATTTGTCAAGCAATAGATTCCAAGGAGACATTCCAGATTTCATTGGTAGTCTTAGTTCACTTCGAGAACTCAACTTGTCTCATAACAACATTACAGGGCATATTCCATAA 1659 37.67 MYRILYFLFFLSYSRVICFSFSNSTKLCPHHQNVALLRLKQTFSVDVSASFAKTDTWKEDTDCCSWDGVTCNRVTSLVIGLDLSCSGLYGTIHSNSSLFLLPHLRRLNLAFNDFNKSSISAKFGQFRRMTHLNLSFSGFSGVIAPEISHLSNLSNSILLLDLSSTNFSGELPSSISILKSLESLDLSHCNFSGSIPLFIASLDNLTELSFLDLSNNKLEGVIPSHVKELSSLSSVHLSNNLFNGTIPSWLFSLPSLIELDLSHNKLNGHIDEFQSPSLESIDLSNNELDGPVPSSIFELVNLTYLQLSSNNLGPLPSLICEMSYIEVLDFSNNNLSGLIPQCLGNFSKSFSVLDLRMNQLYGTIPKTFSKGNLIRNLDFNGNQLEGPLLRSLINCRRLQVLDLGNNRINDTFPHWLETLPELQVLILRSNRFHGHVRGSNFQFPFPKLRIMDLSRNGFSASLSKIYLKNFKAMMNATEDKMELKFMGEYSYRDSIMVTIKGFDFEFVSILFTFTIIDLSSNRFQGDIPDFIGSLSSLRELNLSHNNITGHIP* 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 22500177 22502622 - Vvi19g1119 Vvi19g1119 782618

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1119 552 Pfam Leucine Rich repeat 535 549 IPR001611 GO:0005515
Vvi19g1119 552 Pfam Leucine Rich repeat 102 117 IPR001611 GO:0005515
Vvi19g1119 552 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 11 312 - -
Vvi19g1119 552 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 157 552 - -
Vvi19g1119 552 Gene3D Ribonuclease Inhibitor 26 120 IPR032675 -
Vvi19g1119 552 ProSiteProfiles Leucine-rich repeat profile. 301 322 IPR001611 GO:0005515
Vvi19g1119 552 SUPERFAMILY L domain-like 160 552 - -
Vvi19g1119 552 SMART LRR_typ_2 205 225 IPR003591 -
Vvi19g1119 552 SMART LRR_typ_2 445 468 IPR003591 -
Vvi19g1119 552 SMART LRR_typ_2 419 442 IPR003591 -
Vvi19g1119 552 SMART LRR_typ_2 299 322 IPR003591 -
Vvi19g1119 552 SMART LRR_typ_2 229 253 IPR003591 -
Vvi19g1119 552 SMART LRR_typ_2 178 202 IPR003591 -
Vvi19g1119 552 SMART LRR_typ_2 101 126 IPR003591 -
Vvi19g1119 552 ProSiteProfiles Leucine-rich repeat profile. 536 552 IPR001611 GO:0005515
Vvi19g1119 552 Pfam Leucine rich repeat 207 266 IPR001611 GO:0005515
Vvi19g1119 552 Pfam Leucine rich repeat 394 432 IPR001611 GO:0005515
Vvi19g1119 552 Gene3D Ribonuclease Inhibitor 121 207 IPR032675 -
Vvi19g1119 552 SUPERFAMILY L domain-like 81 209 - -
Vvi19g1119 552 Gene3D Ribonuclease Inhibitor 208 274 IPR032675 -
Vvi19g1119 552 PRINTS Leucine-rich repeat signature 208 221 - -
Vvi19g1119 552 PRINTS Leucine-rich repeat signature 253 266 - -
Vvi19g1119 552 Pfam Leucine Rich Repeat 180 199 IPR001611 GO:0005515
Vvi19g1119 552 Pfam Leucine Rich Repeat 326 346 IPR001611 GO:0005515
Vvi19g1119 552 Gene3D Ribonuclease Inhibitor 275 552 IPR032675 -
Vvi19g1119 552 Pfam Leucine rich repeat N-terminal domain 32 72 IPR013210 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1119 - - - vri:117908287 528.865
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1119 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000755 0 0 0 0 0 3 1 3 4 4 2 3 2 4 7 2 3 9 0 2 11 1 3 5 3 2 4 3 1 7 89