Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g112 ATGCGGTCTCTTCTCTTCTTTCATCTCTTCTTCTTCTTCTCCCTCCTATACCCCCTTTCCTCTACTGCACAACTCTACAAACTCACCACCGGCCTCGGATCAAAGCTTCTCTCACACCCAAAACCCCTCAAAAACCCCTCTCCAACTAGGTTTTTTGAAGTCACCAAACCAGTAAAAGTCCCAAAAACCAAGCCATGTTCATCTCTTGTTCTGCAACATGACTTTGCATCCACATATGGGAAGCCCCCGGTGATTGTCCCCTACTCTCCTCCTTCCCATTGCCCATCGCAGAACTTCTCCAAGATTGTATTGGAATGGACTGCAACCTGTAAAGGAAGGCAGTTTGATAGAATTTTTGGTGTCTGGCTTGACGGGGTTGAGCTTCTCAGGAGCTGTACTGCAGAGCCTAAAGCAACTGGGATTGTTTGGACTGTTGAGAAGGACATAACCAGAAACCTCCCTCTGAATGATGGGTTGTGGTTTGAAATCCAGAACCAGACTCATGTGGAGGGGAAGGAGTTCATAATCCCAAAGAATGCATATAGGGCTGTGTTGGAGGTTTATGTCTCATTCCATGAGAATGATGAGTTTTGGTACTTGAATCCTCCAAATGATTATATTGATGTGAACAATCTCACTGGTTCTATACCTGGAAATTCTGCCTTCAGGGAGGTTTTGGTGAGTCTTGATGGTGAGCTAGTTGGTGCTGTTTGGCCTTTCACAGTGATCCACACTGGTGGGGTGAATCCCCTCCTTTGGAGGCCAATTTCTGCAATTGGGTCATTCAATCTTCCAAGCTATGATATTGAAATCACTCCATTTTTGGGGAATTTGTTGGATGGGAAGAGCCATGGATTAGGGTTTAGTGTTACAAATGCTTTGAATGTGTGGTTTATAGATGCAAATTTACATCTTTGGTTGGATAACAAAAGCAAGAGGACTCAAGGGAAGCTTTTAGGGCACAACTCGAAGTCTTCTTCCTCAATTTCAACATCGTCTATGGAAGGCTTAAATGCATCATTTTTGATACATTCTACTAGGTCTATATCCTCCCGTGGATGGGTCAAGTCCTCCCATGGGAAGATGACAACAAAGACAACCCAAGATTTCAACTTTATGAACAAGATGGATATCTCAAAAAATGGCAATTTGCAGATCGTGAATCAGAGAATCCAAGTTACAAACGATCTTCATACTACATTGCCTTCTTCTTCAACCTATGTTGTCAAATCTACTAAAACCTTTCCCTTGTACTTATACTATGACATTATCAACCAAGGGAATGGAAGCTTCGTAGCGAAATCAAAAATAAAATTGGGGTTCAATGAGAAGAGGTCTAAGAAGCTTGGATCCACTTCATCGAAAATTGCTTTAAAAAATTTGCAGAAGGGACGAGGTAACATGCATGTTGAAGGTAACTTGGTCACCAATGGAACGGCGGCTACTAGTCAAGTATATGAGTACGTTGATCCTAAAGGTTGCTACTTTAGAAATGTTAGTAGCTCAAATGGCACAATTTTGTATGATGAAGCAAGCAATTCTTGTACCATAAGGTCTCAACAACCATCTTCTATGGCTGCTTCTCTCCTTCCTCTCCTCCTTTTTTCTCTCTTCTTCCTCCTCAACCCTCCCTCCACCACTGCAAATCTACACAAAGTCAGCAACCTCCTCAGATCACAGCTTCTCTCACAGCCCAAACCCCACCGAGACACCCCTCCAATCAGGTTCTTTGAAGTCACCAAACCCATCAAAGTCCCCAAAACCAAGCCCTGCTCTTCCCTTGTTCTCCAACATGATTTTGGCTACACATATGGTAAACCCCCTGTTCTTGCTCCCTACTCTCCTCCTGCTCATTGCCCATCTCAGAATTTCTCCAAAATTGTGCTGGAATGGAGTGCCACATGTAAAGGGAGGCAATTTGATCGGATTTTTGGGGTTTGGCTTGGTGGGGTTGAGCTTCTCCGGAGCTGCACTGCAGAGCCTACAGCTACTGGGATTGTTTGGACTGTTAAGAAGGATAATTCTGAAAAATTGGCTTCTGGGTATGGTTCCTGGGCGGATTTGATCTTGCCCATTTCGCGAAATCTGCCTTTGAATGATGGGTTGTGGTTTGAAATTGAGAATTCGACTGATTTGGAGGTGAAGAAGTTCAAAATTCCTCGAAATGCCTATAGGGCTGTGTTGGAGGTTTATCTTTCATTTCATGAGAATGATGAATTTTGGTATTCAAATCCACCAAATGATTACATTTCTGCAAATAATCTTACTGGGACTCCTGGAAATGGGCCTTTTAGGGAGGTTTTGGTGGGGCTTGATGGTAAGCTAGTTGGTGCTGTTTGGCCCTTTACAGTCATCTATACAGGAGGGGTCAACCCCCTCTTATGGAGGCCAATTACTGGAATTGGGTCATTTGATCTTCCGAGTTATAATATTGAAATTACTCCATTTTTAGGGAAGATATTAGATGGAAAGACCCATACTTTTGAGTTTAGCGTTACTAATGCCTTGAATGTATGGTACATAGATGCAAATTTGCATATTTGGTTGGACCATAAGAGCACACAAACTGAAGGGAGGCTTTTGGGCCATGGCTCTGGGTCGTCTTTGTCTACTTCGACATTGTATATGAAGGGTTTAAATGCATCATTTTTGACACTCTCTAGCAGGTCTATATCATCCACTGGATGGGTGAAATCCTCCCATGGGAAGATGACAACCCAGTCAATCCAAGAATTCAAATACATCAACTTAATGGTAATGGGGAATGATGGGGATTTGCAGACTGTGAATCAGACAATTCATTTCAATGATGGTGTTTATACCAAGTTCCCATATTCTTTTAGTTATTCGATCAATTCATCTAAACTGTTTCCCCTTTATTTGTACTCTGACAATGTGGATCGAGGAAATGGAACTTATCTTTCACTGGCAAATGTCACTCTGGGATTTAATGAGGAGAGATCTAACTCTGCTGGTTCTAGCTTCTCCAAGACCTTTCTTGAAAATTTGCAGACGGGGCAGGGTTCTATGATTATAAAGAACAACTTGGTGAGCAGTGGATTGGGGAGTACCCAAGAAGTATACAACTATGGCTGTCCTAAATTCTGCTACTTTAGGAATGTGAGCAGCTCAAACTACACCATTTTGTATGATACGGTGAGCAGTTCTTGCAGAAGAAGGCCACAGTCTCAACTGGACATTAGTCATGGTAAATTCTATTCCATTCCTGCTCGAAAGGTCTTTCTAACATCTGATTTGCGTGAAGATGAGAAGGGGTTTGTCGAATTGTATTCGGGTCGGGTCGGGTTCGGGAAATCGAAGAAGGGGTTAAAGGGAAGTAGCACTGACTCACTGAGCGAACTGTCAGACGGGAGAGATAAGGAAAGAGAGAACGGGTGGAAAGAGCACAAAAACGCTGCCGTTTTGACGTCCCTCTTCGCTCCACTTCACACGATGAGCTTGTCTTCTCCGACCAGTATGTGTTGCTGTCTCGGCTGGAGCTCTTCCTCCTCCGTACAACTAGGGTTTCTTCCCGCCAGATTTTTTCGCGTTTCTTCCAGACCAACCAAAAGATTTCATTTCAAATGCTCTTCTTCGGTTCCTGATTCTGATCCACTCTTGGTTAAGGCTGCAAGAGGGGACCCTGTTACTCGGCCTCCAGCATGGATGATGCGCCAAGCCGGAAGGTACATGGCTGTTTACAGAAAGCTTGCAGAGAAATACCCATCCTTCAGACAGAGGTCAGAGACAACTGATCTCATTGTGGAAATTTCTTTGCAGCCTTGGGAAGCTTTCCACCCTGATGGTGTTATCATTTTCTCCGACATACTTACACCTTTACCTGCATTTGGTGTCCCATTTGACATAGAGGAAGTGAGGGGCCCTGTTATTCATTCTCCAATTCGCTCTGAAGAAGGCTTGAAAGTATTGCATCCCATAGACTTAAAGAAGCTTCATTTTGTGGGAGAATCACTAAGAATTTTGCGGCAGGAGGTGGGGGGACAAGCTGCTGTTCTGGGTTTTGTAGGAGCACCTTGGACAATTGGGACATATATAGTGGAAGGCGGTACAACTCGAACATATACGATCATAAAAAGCATGTGTCATACAGCACCAAATGTATTGAGGGCTCTTCTTTCTCATTTAACACAGGCAATATCTGAATACATTGTTTTCCAAGTTGAATCCGGGGCCCATTGTATACAAATATTTGATTCTTGGGGTGGTCAACTACCGCCTGATATGTGGGAGTGCTGGTCAAAACCTTATATTGAAGAGATGGTGAGTGTTGTAAGGAAAAGGTGCCCTGGAACTCCAATTGTTCTCTACATTAATGGAAATGGTGGCCTTCTTGAGCGAATGAAAGGAACTGGGGTCGATGTGATTGGACTTGACTGGACGGTGGATATGGCTGATGGAAGAAAGCGATTGGGGAGTGGAATCAGTATACAGGGAAATGTGGATCCTGCTTATTTATTTTCTCCTCTTCCTGCCTTGACTGATGAAATTCAAAGGGTTGTGAGGTGTGCAGGACCAAGGGGCCACATTCTTAATTTAGGTCACGGCGTTCTTGTTGGGACACCTGAAGAAGCTGTTGCACATTTCTTTGAAGTTGCAAGAAACTTGAACCTTAGTACACTGCTTGAAGACAATGCAGTGGAGGAACCTAAATTGGCTGTTTGA 4683 43.58 MRSLLFFHLFFFFSLLYPLSSTAQLYKLTTGLGSKLLSHPKPLKNPSPTRFFEVTKPVKVPKTKPCSSLVLQHDFASTYGKPPVIVPYSPPSHCPSQNFSKIVLEWTATCKGRQFDRIFGVWLDGVELLRSCTAEPKATGIVWTVEKDITRNLPLNDGLWFEIQNQTHVEGKEFIIPKNAYRAVLEVYVSFHENDEFWYLNPPNDYIDVNNLTGSIPGNSAFREVLVSLDGELVGAVWPFTVIHTGGVNPLLWRPISAIGSFNLPSYDIEITPFLGNLLDGKSHGLGFSVTNALNVWFIDANLHLWLDNKSKRTQGKLLGHNSKSSSSISTSSMEGLNASFLIHSTRSISSRGWVKSSHGKMTTKTTQDFNFMNKMDISKNGNLQIVNQRIQVTNDLHTTLPSSSTYVVKSTKTFPLYLYYDIINQGNGSFVAKSKIKLGFNEKRSKKLGSTSSKIALKNLQKGRGNMHVEGNLVTNGTAATSQVYEYVDPKGCYFRNVSSSNGTILYDEASNSCTIRSQQPSSMAASLLPLLLFSLFFLLNPPSTTANLHKVSNLLRSQLLSQPKPHRDTPPIRFFEVTKPIKVPKTKPCSSLVLQHDFGYTYGKPPVLAPYSPPAHCPSQNFSKIVLEWSATCKGRQFDRIFGVWLGGVELLRSCTAEPTATGIVWTVKKDNSEKLASGYGSWADLILPISRNLPLNDGLWFEIENSTDLEVKKFKIPRNAYRAVLEVYLSFHENDEFWYSNPPNDYISANNLTGTPGNGPFREVLVGLDGKLVGAVWPFTVIYTGGVNPLLWRPITGIGSFDLPSYNIEITPFLGKILDGKTHTFEFSVTNALNVWYIDANLHIWLDHKSTQTEGRLLGHGSGSSLSTSTLYMKGLNASFLTLSSRSISSTGWVKSSHGKMTTQSIQEFKYINLMVMGNDGDLQTVNQTIHFNDGVYTKFPYSFSYSINSSKLFPLYLYSDNVDRGNGTYLSLANVTLGFNEERSNSAGSSFSKTFLENLQTGQGSMIIKNNLVSSGLGSTQEVYNYGCPKFCYFRNVSSSNYTILYDTVSSSCRRRPQSQLDISHGKFYSIPARKVFLTSDLREDEKGFVELYSGRVGFGKSKKGLKGSSTDSLSELSDGRDKERENGWKEHKNAAVLTSLFAPLHTMSLSSPTSMCCCLGWSSSSSVQLGFLPARFFRVSSRPTKRFHFKCSSSVPDSDPLLVKAARGDPVTRPPAWMMRQAGRYMAVYRKLAEKYPSFRQRSETTDLIVEISLQPWEAFHPDGVIIFSDILTPLPAFGVPFDIEEVRGPVIHSPIRSEEGLKVLHPIDLKKLHFVGESLRILRQEVGGQAAVLGFVGAPWTIGTYIVEGGTTRTYTIIKSMCHTAPNVLRALLSHLTQAISEYIVFQVESGAHCIQIFDSWGGQLPPDMWECWSKPYIEEMVSVVRKRCPGTPIVLYINGNGGLLERMKGTGVDVIGLDWTVDMADGRKRLGSGISIQGNVDPAYLFSPLPALTDEIQRVVRCAGPRGHILNLGHGVLVGTPEEAVAHFFEVARNLNLSTLLEDNAVEEPKLAV* 1561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1401148 1420720 + Vvi19g112 Vvi19g112 781611

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g112 1560 PANTHER PEPTIDE-N4-(N-ACETYL-BETA-GLUCOSAMINYL)ASPARAGINE AMIDASE A PROTEIN 149 524 - -
Vvi19g112 1560 PANTHER PEPTIDE-N4-(N-ACETYL-BETA-GLUCOSAMINYL)ASPARAGINE AMIDASE A PROTEIN 3 151 - -
Vvi19g112 1560 PANTHER PEPTIDE-N4-(N-ACETYL-BETA-GLUCOSAMINYL)ASPARAGINE AMIDASE A PROTEIN 677 1078 - -
Vvi19g112 1560 PANTHER PEPTIDE-N4-(N-ACETYL-BETA-GLUCOSAMINYL)ASPARAGINE AMIDASE A PROTEIN 525 675 - -
Vvi19g112 1560 Gene3D - 1197 1543 IPR038071 -
Vvi19g112 1560 MobiDBLite consensus disorder prediction 1106 1133 - -
Vvi19g112 1560 PANTHER PEPTIDE-N4-(N-ACETYL-BETA-GLUCOSAMINYL)ASPARAGINE AMIDASE A PROTEIN 677 1078 IPR021102 -
Vvi19g112 1560 PANTHER PEPTIDE-N4-(N-ACETYL-BETA-GLUCOSAMINYL)ASPARAGINE AMIDASE A PROTEIN 3 151 IPR021102 -
Vvi19g112 1560 PANTHER PEPTIDE-N4-(N-ACETYL-BETA-GLUCOSAMINYL)ASPARAGINE AMIDASE A PROTEIN 525 675 IPR021102 -
Vvi19g112 1560 PANTHER PEPTIDE-N4-(N-ACETYL-BETA-GLUCOSAMINYL)ASPARAGINE AMIDASE A PROTEIN 149 524 IPR021102 -
Vvi19g112 1560 Pfam Uroporphyrinogen decarboxylase (URO-D) 1206 1541 IPR000257 GO:0004853|GO:0006779
Vvi19g112 1560 ProSitePatterns Uroporphyrinogen decarboxylase signature 1. 1220 1229 IPR000257 GO:0004853|GO:0006779
Vvi19g112 1560 CDD URO-D 1209 1541 IPR006361 GO:0004853|GO:0006779
Vvi19g112 1560 SUPERFAMILY UROD/MetE-like 1206 1543 IPR038071 -
Vvi19g112 1560 Hamap Uroporphyrinogen decarboxylase [hemE]. 1203 1543 IPR006361 GO:0004853|GO:0006779
Vvi19g112 1560 ProSitePatterns Uroporphyrinogen decarboxylase signature 2. 1339 1355 IPR000257 GO:0004853|GO:0006779
Vvi19g112 1560 TIGRFAM hemE: uroporphyrinogen decarboxylase 1207 1540 IPR006361 GO:0004853|GO:0006779
Vvi19g112 1560 Pfam Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A 151 417 IPR021102 -
Vvi19g112 1560 Pfam Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A 685 959 IPR021102 -
Vvi19g112 1560 Pfam Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A 586 676 IPR021102 -
Vvi19g112 1560 Pfam Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A 59 155 IPR021102 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g112 - - - vvi:100246994 1094.34
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g112 . . . . Bpe09g00260 Bpe08g00979 . Bma13g00929 Cmo16g00476 . Cma01g01247 Cma09g00819 Car01g01069 Car09g00736 Sed04g2437 . Cpe02g00669 Bhi09g03509 Tan01g4322 Cmetu07g0523 . Hepe01g1439 Mch11g1011 . Cla11g01712 Cam11g1780 Cec11g1801 Cco11g1806 Clacu11g1939 Cmu11g1750 Cre11g2158 . . . . Lsi04g02014 Csa04g02287 Chy07g00024 Cme07g00538 Blo07g00966 Blo10g00733 . . . . Bma07g01138 . . Cmo01g01303 Cmo09g00814 . Cma16g00441 . . Cpe14g00371 . . . . . . . . . . . . . . . . Csa04g00805 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011363 0 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 31