Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi19g1122 | ATGTTTTCAAAGATTCAATCAGCATGCAATTTGGGAAGATTAGCAGAAGCGCTGAAACTCTTGTCCTCAAACCCAACTCGCTTAGACCCCTCTTTGTATTTGAAAATTTTGCAGCTTTGTATTGACAAAAAAGCTAAAAAGCAAGGCCATTTGATTCACACCCATCTCATAACAAATGGGTTTGGCTCAGATTTGCACTTAAACACCAAACTCATAATCTTTTATGTGAAAGTGGGTGATGTAATTGCTGCTCGCAATGTGTTTGATGGAATGCCTGAGAGGAGTGTTGTTTCTTGGACTGCTATGGTATCTGGGTATTCCCAAAATGGGCGTTTTGAAAAGGCTTTTGTGCTGTTTTCAGATATGCGGCATTGTGGTGTTAAGGCGAACCATGCATTGGTTGATTTTCATTCCAAGTGTGGGAAGATGGAGGATGCATCTTATTTGTTTGGGACGATGATGGAAAGAGATGTGGTTTCATGGAATGCAATGATTGGTGGGTATGCTGTCCAGGGATTTGCTGATGATTCATTCTGTATGTTCCGCTCGATGCTTAGAGGAGGTCTGGTGCCTGATTGCTACACCCTGGGTAGTGTTCTGAGAGCCTCAGCTGAAGGTGGTGGTCTCATTATAGCCAATCAAATACATGGAATCATCACCCAATTGGGGTATGGATCATATGATATTGTAACTGGATTGTTGATCAATGCATATGCAAAAAATGGAAGTTTGAGAAGTGCCAAAGATTTACGCAAGGGTATGCTTAAAAAGGATCTATTTTCTTCCACTGCATTGATCACTGGATATGCACATGAGGGCATCTATACCATGGGCAATGCTCTCATTGATATGTATGCTAAATCTGGAGAGATCGAAGATGCTAAACGAGCTTTTGATGAGATGGAAGAGAAAAATGTGATTTCTTGGACATCATTAATTTCTGGATATGCAAAACATGGGTATGGGCACATGGCTCATGCTCGTTATGTGTTTGATGAAATGCGTCATAGAAATGAGGCTTCTTGGAGCACTATGTTATCGGGTTATGTCCGTGTGGGTTTGTATGAAGAGGCAGTTGGGTTGTTTTGTCAAATGTGGGGCCTGGGAGTTGAGCCAAATGGTTTTATGGTTGCTAGTTTGATTACTGCATGCAGTAGGTCGGGGTATATGGCTGATGAAGGATTTCAAGTCCATGGTTTTGTTGTTAAGACTGGTATTTTAGGTGATGTGTATGTGGGAACTGCACTTGTGCATTTTTATGGCTCAATTGGGCTTGTTTATAATGCCCAGAAGCTCTTTGAGGAGATGCCTGATCATAATGTAGTTTCTTGGACCTCATTAATGGTTGGGTATTCAGACAGTGGAAATCCAGGGGAAGTTTTAAATGTATATCAAAGAATGAGGCAGGAAGGGGTTAGTGGCAATCAAAACACATTTGCAACGGTGACTAGTTCTTGTGGTTTGCTCGAGGATCAAGTTTTGGGTTATCAAGTTCTTGGACACATTATACAGTATGGATTCGAGGATAGCGTTTCTGTGGCAAACTCTCTCATATCGATGTTCTCTAGTTTTAGTAGTGTGGAAGAAGCCTGCTATGTCTTTGATCACATGAATGAATGTGACATTATATCATGGAATGCAATGATTTCTGCATATGCACATCATGGACTTTGTAGGGAATCACTTAGATGTTTTCATTGGATGCGACATCTACATAATGAAACAAATTCCACTACTCTCTCAAGTTTGTTGTCGGTCTGTAGTTCTGTGGATAATCTGAAGTGGGGGAGAGGAATTCATGGTTTGGTAGTTAAATTGGGACTGGACTCAAATGTTTGTATATGCAATACTCTTCTTACATTGTATTCTGAGGCTGGAAGATCAGAAGATGCAGAGTTGGTGTTTCAAGCAATGACGGAAAGGGATTTAATCTCATGGAATTCCATGATGGCTTGCTATGTTCAGGATGGAAAGTGCCTAGATGGACTAAAAATTTTGGCTGAACTTCTTCAGATGGGAAAACCTGACAGGGTTACTTGGAATGCTCTCATTGGTGGTCATGCTGAGAATGAAGAACCAAATGAGGCTGTAAAAGCTTATAAATTGATAAGAGAAAAAGGCATTCCTGCAAATTACATTACCATGGTAAGCCTTGCTGCGACTGCCAACCTGGCTGTATTGGAGGAAGGTCAACAGCTTCATGGATTGGTTATTAAACTTGGGTTTGAATCAGATCTCCATGTTACCAATGCGGCAATGGATATGTATGGTAAGTGTGGGGAAATGCATGATGTGCTGAAAATGCTTCCCCAACCAATCAACAGGTCACGATTATCATGGAACATACTGATATCAGCTTTTGCCAGACATGGGTGTTTTCAGAAAGCTAGAGAGACTTTTCATGAAATGCTTAAACTGGGTCCAAAACCTGACCATGTCACATTTGTCTCTCTTCTATCTGCTTGCAATCATGGGGGTCTAGTGGATGAGGGTCTTGCATATTATGATTCAATGACTAGGGAGTTTGGGGTCTTTCCAGGAATAGAGCATTGTGTATGCATAATTGATCTTCTTGGACGATCAGGAAGACTTTCTCATGCCGAAGGCTTTATCAAAGAAATGCCAGTCCCACCAAATGACCTTGCATGGCGGAGCTTGTTGGCTGCATGTAGAATCCATGGCAATTTGGAGCTTGCAAGGAAAACTGCAGAACATCTTTTGGAATTGGACCCATCAGATGACTCAGCTTATGTCCTGTATTCAAATGTCTGTGCTACTAGTGGGAAATGGGAGGATGTGGAGAATCTCAGGAAAGAAATGGGATCAAATAACATAAAGAAGCAGCCTGCATGCAGTTGGGTCAAATTGAAAGACAAAGTTCATTCATTTGGGATGGGAGAAAAGTATCACCCACAGGCCAGCCGGATAAGTGCAAAGCTGGGAGAGCTTATGAAGATGACCAAAGAAGCAGGTTATGTCCCTGATACTAGCTTTGCATTACATGATATGGATGAGGAACAAAAGGAGTACAACCTTTGGAACCACAGTGAAAGACTTGCCCTTGCATTTGGGTTGATCAATACGCCAGAAAGTTCAACTCTCAGAATTTTTAAGAATCTCCGGGTATGCGGTGATTGTCATTCCGTTTACAAGTTTGTTAGTGGAATTGTTGGGCGGAAAATTGTGTTGAGGGATCCTTATCGATTCCATCATTTTAGTGGTGGCAAGTGTTCTTGTGGTGACTATTGGTAA | 3252 | 41.48 | MFSKIQSACNLGRLAEALKLLSSNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANHALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYTMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMTKEAGYVPDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPESSTLRIFKNLRVCGDCHSVYKFVSGIVGRKIVLRDPYRFHHFSGGKCSCGDYW* | 1084 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 19 | 22530546 | 22543278 | + | Vvi19g1122 | Vvi19g1122 | 782621 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi19g1122 | 1083 | PANTHER | OS11G0680200 PROTEIN | 496 | 674 | - | - | |
| Vvi19g1122 | 1083 | PANTHER | OS11G0680200 PROTEIN | 676 | 1069 | - | - | |
| Vvi19g1122 | 1083 | PANTHER | OS11G0680200 PROTEIN | 277 | 339 | - | - | |
| Vvi19g1122 | 1083 | PANTHER | OS11G0680200 PROTEIN | 39 | 133 | - | - | |
| Vvi19g1122 | 1083 | PANTHER | OS11G0680200 PROTEIN | 414 | 482 | - | - | |
| Vvi19g1122 | 1083 | PANTHER | OS11G0680200 PROTEIN | 132 | 273 | - | - | |
| Vvi19g1122 | 1083 | PANTHER | OS11G0680200 PROTEIN | 327 | 421 | - | - | |
| Vvi19g1122 | 1083 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 95 | 129 | IPR002885 | - | |
| Vvi19g1122 | 1083 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 676 | 1069 | - | - | |
| Vvi19g1122 | 1083 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 414 | 482 | - | - | |
| Vvi19g1122 | 1083 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 277 | 339 | - | - | |
| Vvi19g1122 | 1083 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 39 | 133 | - | - | |
| Vvi19g1122 | 1083 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 327 | 421 | - | - | |
| Vvi19g1122 | 1083 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 132 | 273 | - | - | |
| Vvi19g1122 | 1083 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 496 | 674 | - | - | |
| Vvi19g1122 | 1083 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 440 | 474 | IPR002885 | - | |
| Vvi19g1122 | 1083 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 776 | 810 | IPR002885 | - | |
| Vvi19g1122 | 1083 | SUPERFAMILY | TPR-like | 653 | 932 | IPR011990 | GO:0005515 | |
| Vvi19g1122 | 1083 | Pfam | DYW family of nucleic acid deaminases | 991 | 1083 | IPR032867 | GO:0008270 | |
| Vvi19g1122 | 1083 | Gene3D | Tetratricopeptide repeat domain | 271 | 391 | IPR011990 | GO:0005515 | |
| Vvi19g1122 | 1083 | Gene3D | Tetratricopeptide repeat domain | 594 | 725 | IPR011990 | GO:0005515 | |
| Vvi19g1122 | 1083 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 305 | 337 | IPR002885 | - | |
| Vvi19g1122 | 1083 | TIGRFAM | PPR: pentatricopeptide repeat domain | 813 | 846 | IPR002885 | - | |
| Vvi19g1122 | 1083 | TIGRFAM | PPR: pentatricopeptide repeat domain | 678 | 711 | IPR002885 | - | |
| Vvi19g1122 | 1083 | TIGRFAM | PPR: pentatricopeptide repeat domain | 442 | 475 | IPR002885 | - | |
| Vvi19g1122 | 1083 | TIGRFAM | PPR: pentatricopeptide repeat domain | 159 | 193 | IPR002885 | - | |
| Vvi19g1122 | 1083 | TIGRFAM | PPR: pentatricopeptide repeat domain | 779 | 811 | IPR002885 | - | |
| Vvi19g1122 | 1083 | TIGRFAM | PPR: pentatricopeptide repeat domain | 279 | 306 | IPR002885 | - | |
| Vvi19g1122 | 1083 | TIGRFAM | PPR: pentatricopeptide repeat domain | 97 | 130 | IPR002885 | - | |
| Vvi19g1122 | 1083 | TIGRFAM | PPR: pentatricopeptide repeat domain | 341 | 373 | IPR002885 | - | |
| Vvi19g1122 | 1083 | TIGRFAM | PPR: pentatricopeptide repeat domain | 614 | 642 | IPR002885 | - | |
| Vvi19g1122 | 1083 | Pfam | E motif | 893 | 954 | IPR046848 | - | |
| Vvi19g1122 | 1083 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 338 | 372 | IPR002885 | - | |
| Vvi19g1122 | 1083 | Pfam | PPR repeat family | 156 | 202 | IPR002885 | - | |
| Vvi19g1122 | 1083 | Pfam | PPR repeat family | 779 | 822 | IPR002885 | - | |
| Vvi19g1122 | 1083 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 541 | 575 | IPR002885 | - | |
| Vvi19g1122 | 1083 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 157 | 191 | IPR002885 | - | |
| Vvi19g1122 | 1083 | Pfam | PPR repeat | 614 | 642 | IPR002885 | - | |
| Vvi19g1122 | 1083 | Pfam | PPR repeat | 442 | 472 | IPR002885 | - | |
| Vvi19g1122 | 1083 | Pfam | PPR repeat | 543 | 566 | IPR002885 | - | |
| Vvi19g1122 | 1083 | Pfam | PPR repeat | 307 | 326 | IPR002885 | - | |
| Vvi19g1122 | 1083 | Pfam | PPR repeat | 515 | 541 | IPR002885 | - | |
| Vvi19g1122 | 1083 | Pfam | PPR repeat | 341 | 370 | IPR002885 | - | |
| Vvi19g1122 | 1083 | Pfam | PPR repeat | 678 | 708 | IPR002885 | - | |
| Vvi19g1122 | 1083 | Pfam | PPR repeat | 233 | 258 | IPR002885 | - | |
| Vvi19g1122 | 1083 | Pfam | PPR repeat | 279 | 306 | IPR002885 | - | |
| Vvi19g1122 | 1083 | Pfam | PPR repeat | 97 | 127 | IPR002885 | - | |
| Vvi19g1122 | 1083 | Pfam | PPR repeat | 853 | 874 | IPR002885 | - | |
| Vvi19g1122 | 1083 | Pfam | PPR repeat | 414 | 440 | IPR002885 | - | |
| Vvi19g1122 | 1083 | Pfam | PPR repeat | 644 | 673 | IPR002885 | - | |
| Vvi19g1122 | 1083 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 676 | 710 | IPR002885 | - | |
| Vvi19g1122 | 1083 | Gene3D | Tetratricopeptide repeat domain | 133 | 212 | IPR011990 | GO:0005515 | |
| Vvi19g1122 | 1083 | Gene3D | Tetratricopeptide repeat domain | 392 | 492 | IPR011990 | GO:0005515 | |
| Vvi19g1122 | 1083 | Gene3D | Tetratricopeptide repeat domain | 493 | 593 | IPR011990 | GO:0005515 | |
| Vvi19g1122 | 1083 | Gene3D | Tetratricopeptide repeat domain | 767 | 985 | IPR011990 | GO:0005515 | |
| Vvi19g1122 | 1083 | Gene3D | Tetratricopeptide repeat domain | 1 | 132 | IPR011990 | GO:0005515 | |
| Vvi19g1122 | 1083 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 611 | 645 | IPR002885 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi19g1122 | - | - | - | vvi:100854377 | 961.444 |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi19g1122 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |