Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1122 ATGTTTTCAAAGATTCAATCAGCATGCAATTTGGGAAGATTAGCAGAAGCGCTGAAACTCTTGTCCTCAAACCCAACTCGCTTAGACCCCTCTTTGTATTTGAAAATTTTGCAGCTTTGTATTGACAAAAAAGCTAAAAAGCAAGGCCATTTGATTCACACCCATCTCATAACAAATGGGTTTGGCTCAGATTTGCACTTAAACACCAAACTCATAATCTTTTATGTGAAAGTGGGTGATGTAATTGCTGCTCGCAATGTGTTTGATGGAATGCCTGAGAGGAGTGTTGTTTCTTGGACTGCTATGGTATCTGGGTATTCCCAAAATGGGCGTTTTGAAAAGGCTTTTGTGCTGTTTTCAGATATGCGGCATTGTGGTGTTAAGGCGAACCATGCATTGGTTGATTTTCATTCCAAGTGTGGGAAGATGGAGGATGCATCTTATTTGTTTGGGACGATGATGGAAAGAGATGTGGTTTCATGGAATGCAATGATTGGTGGGTATGCTGTCCAGGGATTTGCTGATGATTCATTCTGTATGTTCCGCTCGATGCTTAGAGGAGGTCTGGTGCCTGATTGCTACACCCTGGGTAGTGTTCTGAGAGCCTCAGCTGAAGGTGGTGGTCTCATTATAGCCAATCAAATACATGGAATCATCACCCAATTGGGGTATGGATCATATGATATTGTAACTGGATTGTTGATCAATGCATATGCAAAAAATGGAAGTTTGAGAAGTGCCAAAGATTTACGCAAGGGTATGCTTAAAAAGGATCTATTTTCTTCCACTGCATTGATCACTGGATATGCACATGAGGGCATCTATACCATGGGCAATGCTCTCATTGATATGTATGCTAAATCTGGAGAGATCGAAGATGCTAAACGAGCTTTTGATGAGATGGAAGAGAAAAATGTGATTTCTTGGACATCATTAATTTCTGGATATGCAAAACATGGGTATGGGCACATGGCTCATGCTCGTTATGTGTTTGATGAAATGCGTCATAGAAATGAGGCTTCTTGGAGCACTATGTTATCGGGTTATGTCCGTGTGGGTTTGTATGAAGAGGCAGTTGGGTTGTTTTGTCAAATGTGGGGCCTGGGAGTTGAGCCAAATGGTTTTATGGTTGCTAGTTTGATTACTGCATGCAGTAGGTCGGGGTATATGGCTGATGAAGGATTTCAAGTCCATGGTTTTGTTGTTAAGACTGGTATTTTAGGTGATGTGTATGTGGGAACTGCACTTGTGCATTTTTATGGCTCAATTGGGCTTGTTTATAATGCCCAGAAGCTCTTTGAGGAGATGCCTGATCATAATGTAGTTTCTTGGACCTCATTAATGGTTGGGTATTCAGACAGTGGAAATCCAGGGGAAGTTTTAAATGTATATCAAAGAATGAGGCAGGAAGGGGTTAGTGGCAATCAAAACACATTTGCAACGGTGACTAGTTCTTGTGGTTTGCTCGAGGATCAAGTTTTGGGTTATCAAGTTCTTGGACACATTATACAGTATGGATTCGAGGATAGCGTTTCTGTGGCAAACTCTCTCATATCGATGTTCTCTAGTTTTAGTAGTGTGGAAGAAGCCTGCTATGTCTTTGATCACATGAATGAATGTGACATTATATCATGGAATGCAATGATTTCTGCATATGCACATCATGGACTTTGTAGGGAATCACTTAGATGTTTTCATTGGATGCGACATCTACATAATGAAACAAATTCCACTACTCTCTCAAGTTTGTTGTCGGTCTGTAGTTCTGTGGATAATCTGAAGTGGGGGAGAGGAATTCATGGTTTGGTAGTTAAATTGGGACTGGACTCAAATGTTTGTATATGCAATACTCTTCTTACATTGTATTCTGAGGCTGGAAGATCAGAAGATGCAGAGTTGGTGTTTCAAGCAATGACGGAAAGGGATTTAATCTCATGGAATTCCATGATGGCTTGCTATGTTCAGGATGGAAAGTGCCTAGATGGACTAAAAATTTTGGCTGAACTTCTTCAGATGGGAAAACCTGACAGGGTTACTTGGAATGCTCTCATTGGTGGTCATGCTGAGAATGAAGAACCAAATGAGGCTGTAAAAGCTTATAAATTGATAAGAGAAAAAGGCATTCCTGCAAATTACATTACCATGGTAAGCCTTGCTGCGACTGCCAACCTGGCTGTATTGGAGGAAGGTCAACAGCTTCATGGATTGGTTATTAAACTTGGGTTTGAATCAGATCTCCATGTTACCAATGCGGCAATGGATATGTATGGTAAGTGTGGGGAAATGCATGATGTGCTGAAAATGCTTCCCCAACCAATCAACAGGTCACGATTATCATGGAACATACTGATATCAGCTTTTGCCAGACATGGGTGTTTTCAGAAAGCTAGAGAGACTTTTCATGAAATGCTTAAACTGGGTCCAAAACCTGACCATGTCACATTTGTCTCTCTTCTATCTGCTTGCAATCATGGGGGTCTAGTGGATGAGGGTCTTGCATATTATGATTCAATGACTAGGGAGTTTGGGGTCTTTCCAGGAATAGAGCATTGTGTATGCATAATTGATCTTCTTGGACGATCAGGAAGACTTTCTCATGCCGAAGGCTTTATCAAAGAAATGCCAGTCCCACCAAATGACCTTGCATGGCGGAGCTTGTTGGCTGCATGTAGAATCCATGGCAATTTGGAGCTTGCAAGGAAAACTGCAGAACATCTTTTGGAATTGGACCCATCAGATGACTCAGCTTATGTCCTGTATTCAAATGTCTGTGCTACTAGTGGGAAATGGGAGGATGTGGAGAATCTCAGGAAAGAAATGGGATCAAATAACATAAAGAAGCAGCCTGCATGCAGTTGGGTCAAATTGAAAGACAAAGTTCATTCATTTGGGATGGGAGAAAAGTATCACCCACAGGCCAGCCGGATAAGTGCAAAGCTGGGAGAGCTTATGAAGATGACCAAAGAAGCAGGTTATGTCCCTGATACTAGCTTTGCATTACATGATATGGATGAGGAACAAAAGGAGTACAACCTTTGGAACCACAGTGAAAGACTTGCCCTTGCATTTGGGTTGATCAATACGCCAGAAAGTTCAACTCTCAGAATTTTTAAGAATCTCCGGGTATGCGGTGATTGTCATTCCGTTTACAAGTTTGTTAGTGGAATTGTTGGGCGGAAAATTGTGTTGAGGGATCCTTATCGATTCCATCATTTTAGTGGTGGCAAGTGTTCTTGTGGTGACTATTGGTAA 3252 41.48 MFSKIQSACNLGRLAEALKLLSSNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANHALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYTMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMTKEAGYVPDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPESSTLRIFKNLRVCGDCHSVYKFVSGIVGRKIVLRDPYRFHHFSGGKCSCGDYW* 1084
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 22530546 22543278 + Vvi19g1122 Vvi19g1122 782621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1122 1083 PANTHER OS11G0680200 PROTEIN 496 674 - -
Vvi19g1122 1083 PANTHER OS11G0680200 PROTEIN 676 1069 - -
Vvi19g1122 1083 PANTHER OS11G0680200 PROTEIN 277 339 - -
Vvi19g1122 1083 PANTHER OS11G0680200 PROTEIN 39 133 - -
Vvi19g1122 1083 PANTHER OS11G0680200 PROTEIN 414 482 - -
Vvi19g1122 1083 PANTHER OS11G0680200 PROTEIN 132 273 - -
Vvi19g1122 1083 PANTHER OS11G0680200 PROTEIN 327 421 - -
Vvi19g1122 1083 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 95 129 IPR002885 -
Vvi19g1122 1083 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 676 1069 - -
Vvi19g1122 1083 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 414 482 - -
Vvi19g1122 1083 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 277 339 - -
Vvi19g1122 1083 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 39 133 - -
Vvi19g1122 1083 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 327 421 - -
Vvi19g1122 1083 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 132 273 - -
Vvi19g1122 1083 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 496 674 - -
Vvi19g1122 1083 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 440 474 IPR002885 -
Vvi19g1122 1083 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 776 810 IPR002885 -
Vvi19g1122 1083 SUPERFAMILY TPR-like 653 932 IPR011990 GO:0005515
Vvi19g1122 1083 Pfam DYW family of nucleic acid deaminases 991 1083 IPR032867 GO:0008270
Vvi19g1122 1083 Gene3D Tetratricopeptide repeat domain 271 391 IPR011990 GO:0005515
Vvi19g1122 1083 Gene3D Tetratricopeptide repeat domain 594 725 IPR011990 GO:0005515
Vvi19g1122 1083 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 337 IPR002885 -
Vvi19g1122 1083 TIGRFAM PPR: pentatricopeptide repeat domain 813 846 IPR002885 -
Vvi19g1122 1083 TIGRFAM PPR: pentatricopeptide repeat domain 678 711 IPR002885 -
Vvi19g1122 1083 TIGRFAM PPR: pentatricopeptide repeat domain 442 475 IPR002885 -
Vvi19g1122 1083 TIGRFAM PPR: pentatricopeptide repeat domain 159 193 IPR002885 -
Vvi19g1122 1083 TIGRFAM PPR: pentatricopeptide repeat domain 779 811 IPR002885 -
Vvi19g1122 1083 TIGRFAM PPR: pentatricopeptide repeat domain 279 306 IPR002885 -
Vvi19g1122 1083 TIGRFAM PPR: pentatricopeptide repeat domain 97 130 IPR002885 -
Vvi19g1122 1083 TIGRFAM PPR: pentatricopeptide repeat domain 341 373 IPR002885 -
Vvi19g1122 1083 TIGRFAM PPR: pentatricopeptide repeat domain 614 642 IPR002885 -
Vvi19g1122 1083 Pfam E motif 893 954 IPR046848 -
Vvi19g1122 1083 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 372 IPR002885 -
Vvi19g1122 1083 Pfam PPR repeat family 156 202 IPR002885 -
Vvi19g1122 1083 Pfam PPR repeat family 779 822 IPR002885 -
Vvi19g1122 1083 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 541 575 IPR002885 -
Vvi19g1122 1083 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 157 191 IPR002885 -
Vvi19g1122 1083 Pfam PPR repeat 614 642 IPR002885 -
Vvi19g1122 1083 Pfam PPR repeat 442 472 IPR002885 -
Vvi19g1122 1083 Pfam PPR repeat 543 566 IPR002885 -
Vvi19g1122 1083 Pfam PPR repeat 307 326 IPR002885 -
Vvi19g1122 1083 Pfam PPR repeat 515 541 IPR002885 -
Vvi19g1122 1083 Pfam PPR repeat 341 370 IPR002885 -
Vvi19g1122 1083 Pfam PPR repeat 678 708 IPR002885 -
Vvi19g1122 1083 Pfam PPR repeat 233 258 IPR002885 -
Vvi19g1122 1083 Pfam PPR repeat 279 306 IPR002885 -
Vvi19g1122 1083 Pfam PPR repeat 97 127 IPR002885 -
Vvi19g1122 1083 Pfam PPR repeat 853 874 IPR002885 -
Vvi19g1122 1083 Pfam PPR repeat 414 440 IPR002885 -
Vvi19g1122 1083 Pfam PPR repeat 644 673 IPR002885 -
Vvi19g1122 1083 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 676 710 IPR002885 -
Vvi19g1122 1083 Gene3D Tetratricopeptide repeat domain 133 212 IPR011990 GO:0005515
Vvi19g1122 1083 Gene3D Tetratricopeptide repeat domain 392 492 IPR011990 GO:0005515
Vvi19g1122 1083 Gene3D Tetratricopeptide repeat domain 493 593 IPR011990 GO:0005515
Vvi19g1122 1083 Gene3D Tetratricopeptide repeat domain 767 985 IPR011990 GO:0005515
Vvi19g1122 1083 Gene3D Tetratricopeptide repeat domain 1 132 IPR011990 GO:0005515
Vvi19g1122 1083 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 611 645 IPR002885 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1122 - - vvi:100854377 961.444