Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1123 ATGAAAACCAAACCCCATGTTTGGATCAAGCTGAGATTTCTATTCTCAGTTTCAAGTAGTTTTTTCAATCTAATTCCCAAAACCCCAGTTGCAAAAACTAGGGTTTGGGCACCAGTTGCTGCAATTAGCACCATTACTGCATCGGTAAACGAAAGCCCAGTTGCAAAAAATAGGGTATGGACACAAATTAGTAGAACTGCCGCCACTACAGCATTGATAAACGGAACCCCAGATGGAAATTTGGTAGAAGTGAGGGATGATCACCCCATAAACTCTACTGATGTTTTTAGGAAATGGGGTTGTTCGGATAGTGAAATAGCTAAGATATTTGTGCGTAGGCCATCTCTGCGCAGAGCAGACCCCAACCTAATTCAATCCAAACTCAATGTACTCAGTTTGTTGGGACTGACCTCAGCTGACCTTGTAAAGATTATCAATTGTCGCCCCCGGTTTTTGAGTTGTAGAATCAACCGGTGCTTTGATGAGCGCATTGAATTCTTCTTAGAGTTGTTTGGATCGAGGGACTTCCTTCGTAAAGCCATTGTTAGGAATCCATCGCTGTTGATTTATGACCTTAATAGTAAGATTAAACGTGTGGTTGAGCTCTATGAAGGAATGGGTGTTGCTCGAAAGGACTTCATTTTGATGGTATCGTCTAGGCCTACTATGATTTCACGAACTTCGTTTAATGATGAGAAGTTGGAGTATATTAGGAGGACTGGAGTTTCCAAGAAATCAAAGATGTACAAGTATGTGGTTGTTCTCATGGGAATCTCACGCCTTGAAACAATCCGAGAGAAGGTGGGAAACTTGGAGAAGTTTGGCTTTTCAGAGGATGAGGTGTTGGGGCTATTTGGGCGGTCTCCACTTGTGTTGACACTCTCTGTTGATAAGGTTCAGAGGAACATGACTTATGTTTTGGGCACAATGAAGTTGCCTGCCAGAGCAGTCCTTGATTGCCCCTTTCTGCTGTACGCTAATTTGGAGGTTGTGTTGAAGCCACGTTTTCTTCTTGCAGGGAAGATTGAAGAAATGGGCCTGGCTCCTCAAATCAAAGGACCTAAATTGTTCAGGGCATTGAGGATGAAAGAGGATAGGTTCTTGGGGGCATTTGTTACATGTCACCCAGAGTCTCTCTCTAATGCATTAATGGAATACTACAGAAACATGAAAGGTCTCAAGCGATTAGCTGTAGCTTCAAAGAAGAACTTGCGTCAAGGATTCCCTTTCTGA 1233 42.9 MKTKPHVWIKLRFLFSVSSSFFNLIPKTPVAKTRVWAPVAAISTITASVNESPVAKNRVWTQISRTAATTALINGTPDGNLVEVRDDHPINSTDVFRKWGCSDSEIAKIFVRRPSLRRADPNLIQSKLNVLSLLGLTSADLVKIINCRPRFLSCRINRCFDERIEFFLELFGSRDFLRKAIVRNPSLLIYDLNSKIKRVVELYEGMGVARKDFILMVSSRPTMISRTSFNDEKLEYIRRTGVSKKSKMYKYVVVLMGISRLETIREKVGNLEKFGFSEDEVLGLFGRSPLVLTLSVDKVQRNMTYVLGTMKLPARAVLDCPFLLYANLEVVLKPRFLLAGKIEEMGLAPQIKGPKLFRALRMKEDRFLGAFVTCHPESLSNALMEYYRNMKGLKRLAVASKKNLRQGFPF* 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 22546263 22547496 + Vvi19g1123 Vvi19g1123 782622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1123 410 Pfam mTERF 154 368 IPR003690 GO:0003690|GO:0006355
Vvi19g1123 410 Pfam mTERF 94 168 IPR003690 GO:0003690|GO:0006355
Vvi19g1123 410 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 50 410 - -
Vvi19g1123 410 Gene3D Transcription termination factor 3, mitochondrial 160 382 IPR038538 -
Vvi19g1123 410 SMART mt_12 246 277 IPR003690 GO:0003690|GO:0006355
Vvi19g1123 410 SMART mt_12 282 313 IPR003690 GO:0003690|GO:0006355
Vvi19g1123 410 SMART mt_12 142 174 IPR003690 GO:0003690|GO:0006355
Vvi19g1123 410 SMART mt_12 214 243 IPR003690 GO:0003690|GO:0006355
Vvi19g1123 410 SMART mt_12 314 348 IPR003690 GO:0003690|GO:0006355
Vvi19g1123 410 SMART mt_12 107 137 IPR003690 GO:0003690|GO:0006355
Vvi19g1123 410 SMART mt_12 178 209 IPR003690 GO:0003690|GO:0006355
Vvi19g1123 410 PANTHER CGI-12 PROTEIN-RELATED 50 410 IPR003690 GO:0003690|GO:0006355
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14395 PF02536 mTERF 2.10E-30 No_clan Vvi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1123 K15032 - vvi:100254688 792.727