Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1124 ATGGCAGCAGCCCTTTTCGCCAGAACCCTTTTTGGAAATCGCTTGATTCGTTCCTCACTTGCCCTCTATCAGAAGCCTCAAATCTTCACCTCTTTTTTCAATAAGAGACCATTTTACTCACGGCCCAACGCTGTCTATTTGGTGTATAGAAGTTCTGGTTTTTCCACTTGTGCTATGGCTTCTTCAACTTCTGGGACAAGGTCTTCTTTTTCAACACAGTCTGTGTCTCCAAATGAACCTGTTGTTTCCGTTGATTGGCTCCATGCCAACATTAGGGAACCTGACTTGAAGGTGTTGGATGCGTCCTGGTACATGCCAGATGAGCAGAGAAATCCACTTCAGGAGTATCAGGTTGCCCACATTCCAGGTGCCCTTTTCTTTGATGTGGATGGCATATCAGATCAAACCACAAATTTGCCACACATGTTGCCATCGGAGGAAGCTTTTGCCGCTGCTGTTTCTGCCCTTGGTATTGAAAATAAAGATGGAGTTGTTGTTTATGACGGAAAGGGAATTTTCAGTGCAGCTCGGGTTTGGTGGATGTTCCGGGTATTTGGGCATGAGAGAATCTGGGTGTTGGATGGGGGCCTGCCAACATGGCGTGCATCAGGATTTGATGTAGAATCTAGTGCTTCTGGTGATGCTATTTTAAAAGCTAGTGCTGCCAGTGAGGCCATAGAGAAAGTATATCGCAGACAGGCAGTCGGGCCAATCACATTTCAGACAAGATTCCAGCCACATCTTGTCTGGACTCTTGAACAGGTTAATCAAAACATTGAGAACAAAACACACCAACACATAGATGCCAGATCAAAGGCCAGGTTTGATGGGATTGCACCAGAGCCTCGAAAGGGAATAAGAAGTGGACATGTCCCCAGCAGCAAGTGCATTCCCTTTTCCCAGATGTTGGATTCTTCACAAAAACTCTTACCTGCAGATGAGCTTAAGAAACGATTTGATCAAGAAGGCATCTCTTTGGACAGCCCCGTTGTGACTTCTTGTGGCACTGGTGTAACTGCTTGTATTCTCGCATTGGGTCTGCATCGTCTTGGGAAATCTGATGTTACTGTCTATGATGGCTCATGGACTGAATGGGGAGCTCACCCTGACACACCCGTCGCAACTTCTTCAGCTTCATCTTAA 1143 46.19 MAAALFARTLFGNRLIRSSLALYQKPQIFTSFFNKRPFYSRPNAVYLVYRSSGFSTCAMASSTSGTRSSFSTQSVSPNEPVVSVDWLHANIREPDLKVLDASWYMPDEQRNPLQEYQVAHIPGALFFDVDGISDQTTNLPHMLPSEEAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHERIWVLDGGLPTWRASGFDVESSASGDAILKASAASEAIEKVYRRQAVGPITFQTRFQPHLVWTLEQVNQNIENKTHQHIDARSKARFDGIAPEPRKGIRSGHVPSSKCIPFSQMLDSSQKLLPADELKKRFDQEGISLDSPVVTSCGTGVTACILALGLHRLGKSDVTVYDGSWTEWGAHPDTPVATSSASS* 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 22558793 22573951 + Vvi19g1124 Vvi19g1124 782623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1124 380 CDD TST_Repeat_2 251 367 - -
Vvi19g1124 380 Gene3D - 245 378 IPR036873 -
Vvi19g1124 380 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 253 376 IPR036873 -
Vvi19g1124 380 ProSitePatterns Rhodanese signature 1. 116 127 IPR001307 GO:0004792
Vvi19g1124 380 PANTHER THIOSULFATE SULFERTANSFERASE 62 376 IPR045078 GO:0016783
Vvi19g1124 380 ProSiteProfiles Rhodanese domain profile. 92 209 IPR001763 -
Vvi19g1124 380 Pfam Rhodanese-like domain 252 367 IPR001763 -
Vvi19g1124 380 Pfam Rhodanese-like domain 83 202 IPR001763 -
Vvi19g1124 380 PANTHER THIOSULFATE/3-MERCAPTOPYRUVATE SULFURTRANSFERASE 1, MITOCHONDRIAL-LIKE 62 376 - -
Vvi19g1124 380 Coils Coil 252 272 - -
Vvi19g1124 380 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 79 210 IPR036873 -
Vvi19g1124 380 SMART rhod_4 250 371 IPR001763 -
Vvi19g1124 380 SMART rhod_4 82 206 IPR001763 -
Vvi19g1124 380 ProSiteProfiles Rhodanese domain profile. 260 374 IPR001763 -
Vvi19g1124 380 Gene3D - 74 215 IPR036873 -
Vvi19g1124 380 CDD TST_Repeat_1 81 204 - -
Vvi19g1124 380 ProSitePatterns Rhodanese C-terminal signature. 355 365 IPR001307 GO:0004792
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1124 K01011 - vvi:100261543 758.444