Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1124 ATGGCAGCAGCCCTTTTCGCCAGAACCCTTTTTGGAAATCGCTTGATTCGTTCCTCACTTGCCCTCTATCAGAAGCCTCAAATCTTCACCTCTTTTTTCAATAAGAGACCATTTTACTCACGGCCCAACGCTGTCTATTTGGTGTATAGAAGTTCTGGTTTTTCCACTTGTGCTATGGCTTCTTCAACTTCTGGGACAAGGTCTTCTTTTTCAACACAGTCTGTGTCTCCAAATGAACCTGTTGTTTCCGTTGATTGGCTCCATGCCAACATTAGGGAACCTGACTTGAAGGTGTTGGATGCGTCCTGGTACATGCCAGATGAGCAGAGAAATCCACTTCAGGAGTATCAGGTTGCCCACATTCCAGGTGCCCTTTTCTTTGATGTGGATGGCATATCAGATCAAACCACAAATTTGCCACACATGTTGCCATCGGAGGAAGCTTTTGCCGCTGCTGTTTCTGCCCTTGGTATTGAAAATAAAGATGGAGTTGTTGTTTATGACGGAAAGGGAATTTTCAGTGCAGCTCGGGTTTGGTGGATGTTCCGGGTATTTGGGCATGAGAGAATCTGGGTGTTGGATGGGGGCCTGCCAACATGGCGTGCATCAGGATTTGATGTAGAATCTAGTGCTTCTGGTGATGCTATTTTAAAAGCTAGTGCTGCCAGTGAGGCCATAGAGAAAGTATATCGCAGACAGGCAGTCGGGCCAATCACATTTCAGACAAGATTCCAGCCACATCTTGTCTGGACTCTTGAACAGGTTAATCAAAACATTGAGAACAAAACACACCAACACATAGATGCCAGATCAAAGGCCAGGTTTGATGGGATTGCACCAGAGCCTCGAAAGGGAATAAGAAGTGGACATGTCCCCAGCAGCAAGTGCATTCCCTTTTCCCAGATGTTGGATTCTTCACAAAAACTCTTACCTGCAGATGAGCTTAAGAAACGATTTGATCAAGAAGGCATCTCTTTGGACAGCCCCGTTGTGACTTCTTGTGGCACTGGTGTAACTGCTTGTATTCTCGCATTGGGTCTGCATCGTCTTGGGAAATCTGATGTTACTGTCTATGATGGCTCATGGACTGAATGGGGAGCTCACCCTGACACACCCGTCGCAACTTCTTCAGCTTCATCTTAA 1143 46.19 MAAALFARTLFGNRLIRSSLALYQKPQIFTSFFNKRPFYSRPNAVYLVYRSSGFSTCAMASSTSGTRSSFSTQSVSPNEPVVSVDWLHANIREPDLKVLDASWYMPDEQRNPLQEYQVAHIPGALFFDVDGISDQTTNLPHMLPSEEAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHERIWVLDGGLPTWRASGFDVESSASGDAILKASAASEAIEKVYRRQAVGPITFQTRFQPHLVWTLEQVNQNIENKTHQHIDARSKARFDGIAPEPRKGIRSGHVPSSKCIPFSQMLDSSQKLLPADELKKRFDQEGISLDSPVVTSCGTGVTACILALGLHRLGKSDVTVYDGSWTEWGAHPDTPVATSSASS* 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 22558793 22573951 + Vvi19g1124 Vvi19g1124 782623

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1124 380 CDD TST_Repeat_2 251 367 - -
Vvi19g1124 380 Gene3D - 245 378 IPR036873 -
Vvi19g1124 380 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 253 376 IPR036873 -
Vvi19g1124 380 ProSitePatterns Rhodanese signature 1. 116 127 IPR001307 GO:0004792
Vvi19g1124 380 PANTHER THIOSULFATE SULFERTANSFERASE 62 376 IPR045078 GO:0016783
Vvi19g1124 380 ProSiteProfiles Rhodanese domain profile. 92 209 IPR001763 -
Vvi19g1124 380 Pfam Rhodanese-like domain 252 367 IPR001763 -
Vvi19g1124 380 Pfam Rhodanese-like domain 83 202 IPR001763 -
Vvi19g1124 380 PANTHER THIOSULFATE/3-MERCAPTOPYRUVATE SULFURTRANSFERASE 1, MITOCHONDRIAL-LIKE 62 376 - -
Vvi19g1124 380 Coils Coil 252 272 - -
Vvi19g1124 380 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 79 210 IPR036873 -
Vvi19g1124 380 SMART rhod_4 250 371 IPR001763 -
Vvi19g1124 380 SMART rhod_4 82 206 IPR001763 -
Vvi19g1124 380 ProSiteProfiles Rhodanese domain profile. 260 374 IPR001763 -
Vvi19g1124 380 Gene3D - 74 215 IPR036873 -
Vvi19g1124 380 CDD TST_Repeat_1 81 204 - -
Vvi19g1124 380 ProSitePatterns Rhodanese C-terminal signature. 355 365 IPR001307 GO:0004792
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1124 K01011 TST, MPST, sseA; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] - vvi:100261543 758.444
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1124 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma03g00501 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi19g1124 . 59 381 Sulfurtransferasese/Rhodanese AT1G79230 78.6 2.5e-153 538.5
Vvi19g1124 . 59 323 Sulfurtransferasese/Rhodanese AT1G16460 74.0 1.7e-115 412.5
Vvi17g389 . 605 884 Sulfurtransferasese/Rhodanese AT5G23060 68.4 2.8e-96 349.0
Vvi15g742 . 1 329 Sulfurtransferasese/Rhodanese AT4G01050 57.9 3.4e-104 375.9
Vvi14g82 . 8 614 Sulfurtransferasese/Rhodanese AT1G09280 66.8 2.5e-236 815.1
Vvi13g182 . 97 446 Sulfurtransferasese/Rhodanese AT2G40760 74.0 5.8e-154 541.2
Vvi17g979 . 11 335 Sulfurtransferasese/Rhodanese AT1G17850 68.5 2.1e-137 486.1
Vvi8g1244 . 1 227 Sulfurtransferasese/Rhodanese AT2G42220 69.9 4.6e-88 321.2
Vvi8g246 . 37 218 Sulfurtransferasese/Rhodanese AT3G08920 67.0 1.2e-71 266.5
Vvi17g860 . 1 287 Sulfurtransferasese/Rhodanese AT4G24750 66.6 1.2e-109 393.3
Vvi6g993 . 17 297 Sulfurtransferasese/Rhodanese AT5G19370 59.6 2.4e-89 325.9
Vvi19g557 . 48 398 Sulfurtransferasese/Rhodanese AT5G55130 73.7 2.2e-153 538.9
Vvi16g997 . 50 228 Sulfurtransferasese/Rhodanese AT4G27700 81.0 1.5e-80 296.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011657 2 1 1 1 0 0 2 0 0 1 0 1 2 1 1 2 0 2 2 0 0 1 1 0 1 0 1 1 3 1 28