Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1126 ATGGCTGAGGAAGCAATACCCAAGGAGATACAGGTAGCCAAAGATGAGGTCCCTCAAAAGCAAGAGCCATCAAAGAAGGACGTTGAGGTTGAAGGGGCTGCAACTGGGGATGTAAAAGATGCAGAGAAAGATGGAGATTCCAAGAAATTCAATGACCCGAAGCCGGGATTGGCAGCATTGATTGATGATGAGAAGGAAAATGAAGGTGTGTCTAAGGATTCAGTAGTTGATTCCTTGGTTGCTGAGAGGGGAGCTTCATTCCAGGAGGAGAGCAACCTTCCATCCGATCTCAAAGACTTGGAGAAGAAGGCATTGCTTGATCTCAGATCGAAGATCGAAGACGCAATACGCAGTAACACTTTGTTCGAGGAGGAGAAGAAGCAAGCGGAAGAGGCCGAGAAAGCAAGGTCGCCGGAGAAAGAAGGAGAAGAGAAGGAAAAATCAAAAGAAGAGGAACAAGAGAAAATCAATATTGAAATCGGGAAAAAGGCCATTGAAGTTGACGAGGAAATCAAGCTGTGGGGAGTACCCTTACTGCCAAGCAAAGGAGACAAGGGAACCGATGTAATCCTCCTCAAATTCTTGCGAGCCCGAGAATTCAAGGTCCAGGAGGCCTTCGAGATGCTGAGAAACACCCTCAAATGGATAAAAGATAACAACATCGACATCATTCTGGAGGAGGAGTTTCCGCCCGAGCTGAGCTCGGTGGCATACATGCAAGGCATGGATAGGAAAGGCCACCCCATCTGCTACAACATCTTCGGCACGTTTCTGAACGATGAAATCTACAACAAGACGTTTGGGACCGAAGAACTTCGCCACAAGTTCTTGAGATGGAGGTTTCAGCTGATGGAGAGGGGGATTAAGAAGCTTGATTTTGGGTCAGGTGGGGCAACGTCAATGCTTCAAGTGAATGACCTGAGGAACAGCCCTGGGCCGACCAAGAAGGAGCTTCGCCAAGCTATGAAACAGGCCGTTGGGCTTCTCCAAGACAATTACCCTGAATTTGTTTCAAGAAATATCTTCATTAATGTGCCCTTCTGGTCTTACGCCTTCTATGCTGTTGTATCGCCTTTCTTCACACAAAGAAGCAAGAACAAATTCGACTTTGCCCGCCCTGCCAGGGTCACTGAAACCCTTCTCAAGTACATTGATGCTCAGCAAATCCCGGTTGGTTATGGTGGGTTTCACAGGGAGAATGATCCAGACTTCTCCATTGAAGATGGTGTTTCAGAGGTTATTATAAAGGGTGGATCATCAGGAGCCATTGCAATACCTGCACCAGAGGTAGGGACAAAATTCACATGGGAGATAACAGTGTTGGGGTGGGACGTGAACTACAGGGAGGAATTCGTGCCGAAAGATGAAGGGTCGTATACGATGATAGTACAGAAGGAGAGGAAGGTGGGGTGGGAGGAGGGAGCTATCAGAAACTCCTTCACCAACAAGGAAGCAGGCATGCTTGTGCTTACCATTGACAACGCTACTTTCAAGAAGAAGAGGGTTTTGTATCGATACAAGCCCAACTCCACCTCCACCACCACCACCACCCCCTCTTCTTCTACTACTACATGA 1575 47.68 MAEEAIPKEIQVAKDEVPQKQEPSKKDVEVEGAATGDVKDAEKDGDSKKFNDPKPGLAALIDDEKENEGVSKDSVVDSLVAERGASFQEESNLPSDLKDLEKKALLDLRSKIEDAIRSNTLFEEEKKQAEEAEKARSPEKEGEEKEKSKEEEQEKINIEIGKKAIEVDEEIKLWGVPLLPSKGDKGTDVILLKFLRAREFKVQEAFEMLRNTLKWIKDNNIDIILEEEFPPELSSVAYMQGMDRKGHPICYNIFGTFLNDEIYNKTFGTEELRHKFLRWRFQLMERGIKKLDFGSGGATSMLQVNDLRNSPGPTKKELRQAMKQAVGLLQDNYPEFVSRNIFINVPFWSYAFYAVVSPFFTQRSKNKFDFARPARVTETLLKYIDAQQIPVGYGGFHRENDPDFSIEDGVSEVIIKGGSSGAIAIPAPEVGTKFTWEITVLGWDVNYREEFVPKDEGSYTMIVQKERKVGWEEGAIRNSFTNKEAGMLVLTIDNATFKKKRVLYRYKPNSTSTTTTTPSSSTTT* 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 22654524 22657736 + Vvi19g1126 Vvi19g1126 782625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1126 524 SUPERFAMILY CRAL/TRIO domain 236 398 IPR036865 -
Vvi19g1126 524 PRINTS Cellular retinaldehyde-binding protein signature 190 212 - -
Vvi19g1126 524 PRINTS Cellular retinaldehyde-binding protein signature 320 341 - -
Vvi19g1126 524 PRINTS Cellular retinaldehyde-binding protein signature 353 372 - -
Vvi19g1126 524 Gene3D - 91 411 IPR036865 -
Vvi19g1126 524 SMART sec14_4 231 398 IPR001251 -
Vvi19g1126 524 CDD SEC14 226 395 IPR001251 -
Vvi19g1126 524 MobiDBLite consensus disorder prediction 1 75 - -
Vvi19g1126 524 SUPERFAMILY CRAL/TRIO N-terminal domain 93 226 IPR036273 -
Vvi19g1126 524 MobiDBLite consensus disorder prediction 123 154 - -
Vvi19g1126 524 Gene3D GOLD domain 412 507 - -
Vvi19g1126 524 PANTHER PATELLIN-4 48 510 - -
Vvi19g1126 524 SMART CRAL_TRIO_N_2 187 212 IPR011074 -
Vvi19g1126 524 Pfam CRAL/TRIO, N-terminal domain 151 211 IPR011074 -
Vvi19g1126 524 MobiDBLite consensus disorder prediction 1 51 - -
Vvi19g1126 524 Pfam CRAL/TRIO domain 236 395 IPR001251 -
Vvi19g1126 524 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 226 401 IPR001251 -
Vvi19g1126 524 Coils Coil 112 132 - -
Vvi19g1126 524 PANTHER PATELLIN-1 48 510 IPR044834 GO:0008289
Vvi19g1126 524 MobiDBLite consensus disorder prediction 58 72 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1126 - - vvi:100247845 946.036