Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1126 ATGGCTGAGGAAGCAATACCCAAGGAGATACAGGTAGCCAAAGATGAGGTCCCTCAAAAGCAAGAGCCATCAAAGAAGGACGTTGAGGTTGAAGGGGCTGCAACTGGGGATGTAAAAGATGCAGAGAAAGATGGAGATTCCAAGAAATTCAATGACCCGAAGCCGGGATTGGCAGCATTGATTGATGATGAGAAGGAAAATGAAGGTGTGTCTAAGGATTCAGTAGTTGATTCCTTGGTTGCTGAGAGGGGAGCTTCATTCCAGGAGGAGAGCAACCTTCCATCCGATCTCAAAGACTTGGAGAAGAAGGCATTGCTTGATCTCAGATCGAAGATCGAAGACGCAATACGCAGTAACACTTTGTTCGAGGAGGAGAAGAAGCAAGCGGAAGAGGCCGAGAAAGCAAGGTCGCCGGAGAAAGAAGGAGAAGAGAAGGAAAAATCAAAAGAAGAGGAACAAGAGAAAATCAATATTGAAATCGGGAAAAAGGCCATTGAAGTTGACGAGGAAATCAAGCTGTGGGGAGTACCCTTACTGCCAAGCAAAGGAGACAAGGGAACCGATGTAATCCTCCTCAAATTCTTGCGAGCCCGAGAATTCAAGGTCCAGGAGGCCTTCGAGATGCTGAGAAACACCCTCAAATGGATAAAAGATAACAACATCGACATCATTCTGGAGGAGGAGTTTCCGCCCGAGCTGAGCTCGGTGGCATACATGCAAGGCATGGATAGGAAAGGCCACCCCATCTGCTACAACATCTTCGGCACGTTTCTGAACGATGAAATCTACAACAAGACGTTTGGGACCGAAGAACTTCGCCACAAGTTCTTGAGATGGAGGTTTCAGCTGATGGAGAGGGGGATTAAGAAGCTTGATTTTGGGTCAGGTGGGGCAACGTCAATGCTTCAAGTGAATGACCTGAGGAACAGCCCTGGGCCGACCAAGAAGGAGCTTCGCCAAGCTATGAAACAGGCCGTTGGGCTTCTCCAAGACAATTACCCTGAATTTGTTTCAAGAAATATCTTCATTAATGTGCCCTTCTGGTCTTACGCCTTCTATGCTGTTGTATCGCCTTTCTTCACACAAAGAAGCAAGAACAAATTCGACTTTGCCCGCCCTGCCAGGGTCACTGAAACCCTTCTCAAGTACATTGATGCTCAGCAAATCCCGGTTGGTTATGGTGGGTTTCACAGGGAGAATGATCCAGACTTCTCCATTGAAGATGGTGTTTCAGAGGTTATTATAAAGGGTGGATCATCAGGAGCCATTGCAATACCTGCACCAGAGGTAGGGACAAAATTCACATGGGAGATAACAGTGTTGGGGTGGGACGTGAACTACAGGGAGGAATTCGTGCCGAAAGATGAAGGGTCGTATACGATGATAGTACAGAAGGAGAGGAAGGTGGGGTGGGAGGAGGGAGCTATCAGAAACTCCTTCACCAACAAGGAAGCAGGCATGCTTGTGCTTACCATTGACAACGCTACTTTCAAGAAGAAGAGGGTTTTGTATCGATACAAGCCCAACTCCACCTCCACCACCACCACCACCCCCTCTTCTTCTACTACTACATGA 1575 47.68 MAEEAIPKEIQVAKDEVPQKQEPSKKDVEVEGAATGDVKDAEKDGDSKKFNDPKPGLAALIDDEKENEGVSKDSVVDSLVAERGASFQEESNLPSDLKDLEKKALLDLRSKIEDAIRSNTLFEEEKKQAEEAEKARSPEKEGEEKEKSKEEEQEKINIEIGKKAIEVDEEIKLWGVPLLPSKGDKGTDVILLKFLRAREFKVQEAFEMLRNTLKWIKDNNIDIILEEEFPPELSSVAYMQGMDRKGHPICYNIFGTFLNDEIYNKTFGTEELRHKFLRWRFQLMERGIKKLDFGSGGATSMLQVNDLRNSPGPTKKELRQAMKQAVGLLQDNYPEFVSRNIFINVPFWSYAFYAVVSPFFTQRSKNKFDFARPARVTETLLKYIDAQQIPVGYGGFHRENDPDFSIEDGVSEVIIKGGSSGAIAIPAPEVGTKFTWEITVLGWDVNYREEFVPKDEGSYTMIVQKERKVGWEEGAIRNSFTNKEAGMLVLTIDNATFKKKRVLYRYKPNSTSTTTTTPSSSTTT* 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 22654524 22657736 + Vvi19g1126 Vvi19g1126 782625

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1126 524 SUPERFAMILY CRAL/TRIO domain 236 398 IPR036865 -
Vvi19g1126 524 PRINTS Cellular retinaldehyde-binding protein signature 190 212 - -
Vvi19g1126 524 PRINTS Cellular retinaldehyde-binding protein signature 320 341 - -
Vvi19g1126 524 PRINTS Cellular retinaldehyde-binding protein signature 353 372 - -
Vvi19g1126 524 Gene3D - 91 411 IPR036865 -
Vvi19g1126 524 SMART sec14_4 231 398 IPR001251 -
Vvi19g1126 524 CDD SEC14 226 395 IPR001251 -
Vvi19g1126 524 MobiDBLite consensus disorder prediction 1 75 - -
Vvi19g1126 524 SUPERFAMILY CRAL/TRIO N-terminal domain 93 226 IPR036273 -
Vvi19g1126 524 MobiDBLite consensus disorder prediction 123 154 - -
Vvi19g1126 524 Gene3D GOLD domain 412 507 - -
Vvi19g1126 524 PANTHER PATELLIN-4 48 510 - -
Vvi19g1126 524 SMART CRAL_TRIO_N_2 187 212 IPR011074 -
Vvi19g1126 524 Pfam CRAL/TRIO, N-terminal domain 151 211 IPR011074 -
Vvi19g1126 524 MobiDBLite consensus disorder prediction 1 51 - -
Vvi19g1126 524 Pfam CRAL/TRIO domain 236 395 IPR001251 -
Vvi19g1126 524 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 226 401 IPR001251 -
Vvi19g1126 524 Coils Coil 112 132 - -
Vvi19g1126 524 PANTHER PATELLIN-1 48 510 IPR044834 GO:0008289
Vvi19g1126 524 MobiDBLite consensus disorder prediction 58 72 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1126 - - - vvi:100247845 946.036
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1126 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009844 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 2 32