Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1131 ATGGGGACAAATGAGGTTGCAATTATTGAAGATCATGGAACAATTAATACTAATACAAACAGTATTAGGAGGAAGACTCCCCTCCAGCTTAAAACTCTCGAGAGCTTGTATTCGGAGGATAACTATCCCACACAAAGGGTTATGAAAGATTATGCTGCGGCTTTAGGATTGACATACAAGCAGGTCAGGGGATGGTTTTTTGAGAGGAGAAGAAAAGAGAAAAATGAAAATGGTATGGGAGTATCATCAAGAAACATGTCTTCATCTTCAACATACAACAGGGCATGCCTTGGGGCTCACCATTGGCATTGTTTTCGCAATCATGACTCTAGGGCTGTTGAGAGAGGGAAAATTTTGAATGAAGACTTATCAACTACAGATTACATACTGAAGAAGGTGTTCCGAAAGGATGGTCCCCCCCTTGGTGTGGAGTTTGATTCTCTACCTTCTAGTTCATTTTGCCATTGTACAGATTCCAGAAACTCCCATCGTACTTGCCAAGAGAACCAAACATCTTCCAAAAGGAGAAAGGTGGTGGTGTCCAAGCCTGCTGTTTTACACCAGCAGTTTTGCAATAATAAGAGTGCTCCAGCAAAAATACACGGTATTGGAAAAGGTTTGATGACAGTCTGGAGGGCAACAAATCCCGGTGCTGGAGATTTTCCTACTGGCATTGATTTTGCTGATGGACAAGTTGCTGCTGTATCTCCAACTTCAACTTCTATACTAAGAAAGTCACTAATAAAAAAGAAAAAGCCACGAAAACAGTCATCCGTTACTAAATGGAAAAGTGTAGGTGGTAAATTGAATGATAAAAAGAAGCCTTCAAGAAAAAGGGGAAAGGTGGAATGTAATAAAGATGTGAATCAGAAGAAGCCAAATAAAGAGAAATGTGAACTTGCTCTAGAAGAAGGGAAATCTCAAGAACACCTTGATCAGTTTGCAATGCTGATGGATGATGAGGAGCTGGAGCTTCAAGAATCGCAGGCAGGACCAAATCCTGTGACATGCTCTGCTCATTTTGCTACCAATGGACTACATGGCTGTTCACTTTGCAAAGATTTGCTGGCCAAATTTCCTCCCAATGCTGTTAAGATGAAGCAACCATTCTGTATGCAACCTTGGGATTCTTCTCCAGAGCTTGTCAAGAAAATGTTCAAGGTCCTTCATTTTCTATATACTTACTCTGTAGTAGTTGATGTATGCCCCTTTACCCTTGATGAATTTGCTCAAGCATTTCATGATGAGGATTCTTTGTTGCTTGGAAAAGTTCATCTGGCCCTTCTCAACCTTCTTTTGTCTGATGTGGAAACAGAGCTGAGCAGTGGGTTTCTCCCTCATGTGATTAAAAACTGCAAGTTTCTTGGGTTACTTCAATCGGTTGGACAAAATGAGTTTGTGCTGAAGTTTTGGAAGAGATCTCTGAATCCTTTAACATGGACAGAAATACTGCGTCAAGTTTTGGTTGCAGCTGGTTTTGGTTCAAGAAAAGGTACATTGCGGAGGGAAGCCCTTGATAAGAAAGCAGGCTTGAAAGGAAGAGTAGTTCCATTTTGCTTGATGGTTGATTGTTTACTCAAATGTTTGCTTCCTTTTTATTTTCCCCTTGCCCCCATGTTTGAACTGAATCCTATGGTAAAGTATGGCTTACGTCCTGGTACTTTGAAGGGTGAACTGTTTAGTATTTTATCGAATCAAGGAAATAATGGTATGAAAGTTCCAGACTTGGCAAGGTGTGTGCAGATTTCTGAATTGAATCTTGCTGGCACGACTGATGAGCTGGAACTTCTAATATATTCTACCCTTTCAAGTGACATTACTTTATATGAAAAGATTTCTAGCTCTTCATATCGTCTACGCATTACTTCTCACACAAATGAAGCTGAAAATTTTCAATCAGATACTGATGACTCTGGAAGCATTGACGATGACTCTAAGGACAGCAGAAAATATAGCAGTAGCGATGATTCTGACTCTGATTCAGGAACTTCCAATTTAGGGAAACTGAATTATATGAACCATCATAAACAGAGAAATGGCATGTTGACTATATATACTGAAATTGATGAGAGCAATCCAGGAGAAGTATGGTTATTAGGATTGATGGAGGGTGAATATTCAGATTTAAGCATTGAAGAGAAGCTCAATGCCTTAATGGCTTTGGTTGATCTTGTTAGTGGTGGAAGCAGTATCAGAATGGAGGATCTTACAAAAGCGGTAGTAGAATATGTTCCTAACATCCATCATTATGGTTCTGGAGCAAAAATAAAGAGATCATATACAAAGCAACACAACTTGCCCACACCAGCACGGGGCCACTTTGGACAAATGCTTGGTGGAAAGGAAATAAATCCATCATCTGAGTTATGCCCAGTTGATTCTTCCACATCAATCTCAAAATTCCATGGGAAAGAAAAGTTCTCTAGCAAAAGAAAGGAGACAAGAGAAGCAGAAGTTGGGTTGGATTTACATCCTATGCAATCTGTCTTTTTGGGGCCTGATCGAAGGTATAATAGATACTGGCTTTTCTTAGGCCCTTGTAATGCAAATGATCCTGGTCACAAGAGGGTGTACTTTGAATCTTCTGAAGATGGTCACTGGGAGGTGATTGATACTGAAGAGGCTTTTTGTGCCTTGCTGTCAGTGTTGGATGGCAGGGGTAAGCGGGAGGCTTTTCTTCTTGCATCTTTAGAGAAACGGAAAGCTTCTCTCTGCCAAGAAATGTCAAGCAGAATAGCAATCCATTCTGGAAGCACGTCATTGACACAATATGATAGATCTGACCTGTATATGATTAGAGAAGATAGTTCTTCTCCAGTATCTGATATAGTAGACAACCCATGCGCAACTGATATTACCAATGATTTTTTGGCTTCATCTGGTGCCATAGTTCTTGGAGTTGGAAAGAAGGGAGAAGAGCAAAAACAAAGATGGCGCCGGCTCCAGGAATTTGATGCATGGATATGGAGTTCTTTTTACTCTGATCTTAATGCTGTAAAACATGGCAAGAGGACTTATCTTGATTCACTCGCTAGATGTGAAAGTTGTCATGATCTGTATTGGCGGGATGAAAAGCACTGTAAAACTTGTCATACCACTTTTGAGCTTGATTTTGATCTCGAAGAAAAATATGCGATTCATATAGCGACATGCAGGGAGAAAGAAGACAATGACATGTTTCCAAAGCATAAGGTGCTATCATCACAGTTACAGTCATTGAAAGCTGCAATTCACGCAATTGAGTCAGTCATGCCTGAAGATGCCTTAGTGGAGGCTTGGTCAAAATCTGCTCATAAGCTTTGGGTCAGACGCCTCAGACGCACTTCATATTTGACAGAGCTTTTGCAGGTTCTTGCTGATTTTGTTGGTGCCATCAAAGAGGACTGGTTGTGTCAGTCCGATGTTGTGCTAGGTTCTAATAATCTTTTGGAAGAAATTGTTGTATCATTTTCAACTATGCCCCAAACATCATCTGCAGTTGCACTCTGGTTGGTGAAGTTGGATGCCTTGATTGCACCCCATCTGGAGAGGGTTCAACTTCATTCTAAAAAGAGAACAAGAAATTAG 3567 40.57 MGTNEVAIIEDHGTINTNTNSIRRKTPLQLKTLESLYSEDNYPTQRVMKDYAAALGLTYKQVRGWFFERRRKEKNENGMGVSSRNMSSSSTYNRACLGAHHWHCFRNHDSRAVERGKILNEDLSTTDYILKKVFRKDGPPLGVEFDSLPSSSFCHCTDSRNSHRTCQENQTSSKRRKVVVSKPAVLHQQFCNNKSAPAKIHGIGKGLMTVWRATNPGAGDFPTGIDFADGQVAAVSPTSTSILRKSLIKKKKPRKQSSVTKWKSVGGKLNDKKKPSRKRGKVECNKDVNQKKPNKEKCELALEEGKSQEHLDQFAMLMDDEELELQESQAGPNPVTCSAHFATNGLHGCSLCKDLLAKFPPNAVKMKQPFCMQPWDSSPELVKKMFKVLHFLYTYSVVVDVCPFTLDEFAQAFHDEDSLLLGKVHLALLNLLLSDVETELSSGFLPHVIKNCKFLGLLQSVGQNEFVLKFWKRSLNPLTWTEILRQVLVAAGFGSRKGTLRREALDKKAGLKGRVVPFCLMVDCLLKCLLPFYFPLAPMFELNPMVKYGLRPGTLKGELFSILSNQGNNGMKVPDLARCVQISELNLAGTTDELELLIYSTLSSDITLYEKISSSSYRLRITSHTNEAENFQSDTDDSGSIDDDSKDSRKYSSSDDSDSDSGTSNLGKLNYMNHHKQRNGMLTIYTEIDESNPGEVWLLGLMEGEYSDLSIEEKLNALMALVDLVSGGSSIRMEDLTKAVVEYVPNIHHYGSGAKIKRSYTKQHNLPTPARGHFGQMLGGKEINPSSELCPVDSSTSISKFHGKEKFSSKRKETREAEVGLDLHPMQSVFLGPDRRYNRYWLFLGPCNANDPGHKRVYFESSEDGHWEVIDTEEAFCALLSVLDGRGKREAFLLASLEKRKASLCQEMSSRIAIHSGSTSLTQYDRSDLYMIREDSSSPVSDIVDNPCATDITNDFLASSGAIVLGVGKKGEEQKQRWRRLQEFDAWIWSSFYSDLNAVKHGKRTYLDSLARCESCHDLYWRDEKHCKTCHTTFELDFDLEEKYAIHIATCREKEDNDMFPKHKVLSSQLQSLKAAIHAIESVMPEDALVEAWSKSAHKLWVRRLRRTSYLTELLQVLADFVGAIKEDWLCQSDVVLGSNNLLEEIVVSFSTMPQTSSAVALWLVKLDALIAPHLERVQLHSKKRTRN* 1189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 22688698 22717134 + Vvi19g1131 Vvi19g1131 782630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1131 1188 MobiDBLite consensus disorder prediction 266 290 - -
Vvi19g1131 1188 MobiDBLite consensus disorder prediction 657 672 - -
Vvi19g1131 1188 Pfam DDT domain 380 435 IPR018501 -
Vvi19g1131 1188 ProSiteProfiles 'Homeobox' domain profile. 26 76 IPR001356 GO:0003677
Vvi19g1131 1188 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 694 733 IPR028942 -
Vvi19g1131 1188 PANTHER OS07G0619600 PROTEIN 11 509 - -
Vvi19g1131 1188 PANTHER OS07G0619600 PROTEIN 541 1183 - -
Vvi19g1131 1188 SUPERFAMILY Homeodomain-like 19 76 IPR009057 -
Vvi19g1131 1188 SMART testlast3 379 438 IPR018501 -
Vvi19g1131 1188 MobiDBLite consensus disorder prediction 642 656 - -
Vvi19g1131 1188 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 541 1183 IPR044977 GO:0006357
Vvi19g1131 1188 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 11 509 IPR044977 GO:0006357
Vvi19g1131 1188 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 827 901 IPR028941 -
Vvi19g1131 1188 Gene3D - 12 93 - -
Vvi19g1131 1188 MobiDBLite consensus disorder prediction 629 672 - -
Vvi19g1131 1188 SMART HOX_1 19 80 IPR001356 GO:0003677
Vvi19g1131 1188 CDD homeodomain 23 77 IPR001356 GO:0003677
Vvi19g1131 1188 ProSiteProfiles DDT domain profile. 379 438 IPR018501 -
Vvi19g1131 1188 MobiDBLite consensus disorder prediction 246 290 - -
Vvi19g1131 1188 Pfam Homeodomain 25 75 IPR001356 GO:0003677
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14396 PF15613 WSD 2.40E-12 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1131 - - vvi:100241125 2216.42