Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1131 ATGGGGACAAATGAGGTTGCAATTATTGAAGATCATGGAACAATTAATACTAATACAAACAGTATTAGGAGGAAGACTCCCCTCCAGCTTAAAACTCTCGAGAGCTTGTATTCGGAGGATAACTATCCCACACAAAGGGTTATGAAAGATTATGCTGCGGCTTTAGGATTGACATACAAGCAGGTCAGGGGATGGTTTTTTGAGAGGAGAAGAAAAGAGAAAAATGAAAATGGTATGGGAGTATCATCAAGAAACATGTCTTCATCTTCAACATACAACAGGGCATGCCTTGGGGCTCACCATTGGCATTGTTTTCGCAATCATGACTCTAGGGCTGTTGAGAGAGGGAAAATTTTGAATGAAGACTTATCAACTACAGATTACATACTGAAGAAGGTGTTCCGAAAGGATGGTCCCCCCCTTGGTGTGGAGTTTGATTCTCTACCTTCTAGTTCATTTTGCCATTGTACAGATTCCAGAAACTCCCATCGTACTTGCCAAGAGAACCAAACATCTTCCAAAAGGAGAAAGGTGGTGGTGTCCAAGCCTGCTGTTTTACACCAGCAGTTTTGCAATAATAAGAGTGCTCCAGCAAAAATACACGGTATTGGAAAAGGTTTGATGACAGTCTGGAGGGCAACAAATCCCGGTGCTGGAGATTTTCCTACTGGCATTGATTTTGCTGATGGACAAGTTGCTGCTGTATCTCCAACTTCAACTTCTATACTAAGAAAGTCACTAATAAAAAAGAAAAAGCCACGAAAACAGTCATCCGTTACTAAATGGAAAAGTGTAGGTGGTAAATTGAATGATAAAAAGAAGCCTTCAAGAAAAAGGGGAAAGGTGGAATGTAATAAAGATGTGAATCAGAAGAAGCCAAATAAAGAGAAATGTGAACTTGCTCTAGAAGAAGGGAAATCTCAAGAACACCTTGATCAGTTTGCAATGCTGATGGATGATGAGGAGCTGGAGCTTCAAGAATCGCAGGCAGGACCAAATCCTGTGACATGCTCTGCTCATTTTGCTACCAATGGACTACATGGCTGTTCACTTTGCAAAGATTTGCTGGCCAAATTTCCTCCCAATGCTGTTAAGATGAAGCAACCATTCTGTATGCAACCTTGGGATTCTTCTCCAGAGCTTGTCAAGAAAATGTTCAAGGTCCTTCATTTTCTATATACTTACTCTGTAGTAGTTGATGTATGCCCCTTTACCCTTGATGAATTTGCTCAAGCATTTCATGATGAGGATTCTTTGTTGCTTGGAAAAGTTCATCTGGCCCTTCTCAACCTTCTTTTGTCTGATGTGGAAACAGAGCTGAGCAGTGGGTTTCTCCCTCATGTGATTAAAAACTGCAAGTTTCTTGGGTTACTTCAATCGGTTGGACAAAATGAGTTTGTGCTGAAGTTTTGGAAGAGATCTCTGAATCCTTTAACATGGACAGAAATACTGCGTCAAGTTTTGGTTGCAGCTGGTTTTGGTTCAAGAAAAGGTACATTGCGGAGGGAAGCCCTTGATAAGAAAGCAGGCTTGAAAGGAAGAGTAGTTCCATTTTGCTTGATGGTTGATTGTTTACTCAAATGTTTGCTTCCTTTTTATTTTCCCCTTGCCCCCATGTTTGAACTGAATCCTATGGTAAAGTATGGCTTACGTCCTGGTACTTTGAAGGGTGAACTGTTTAGTATTTTATCGAATCAAGGAAATAATGGTATGAAAGTTCCAGACTTGGCAAGGTGTGTGCAGATTTCTGAATTGAATCTTGCTGGCACGACTGATGAGCTGGAACTTCTAATATATTCTACCCTTTCAAGTGACATTACTTTATATGAAAAGATTTCTAGCTCTTCATATCGTCTACGCATTACTTCTCACACAAATGAAGCTGAAAATTTTCAATCAGATACTGATGACTCTGGAAGCATTGACGATGACTCTAAGGACAGCAGAAAATATAGCAGTAGCGATGATTCTGACTCTGATTCAGGAACTTCCAATTTAGGGAAACTGAATTATATGAACCATCATAAACAGAGAAATGGCATGTTGACTATATATACTGAAATTGATGAGAGCAATCCAGGAGAAGTATGGTTATTAGGATTGATGGAGGGTGAATATTCAGATTTAAGCATTGAAGAGAAGCTCAATGCCTTAATGGCTTTGGTTGATCTTGTTAGTGGTGGAAGCAGTATCAGAATGGAGGATCTTACAAAAGCGGTAGTAGAATATGTTCCTAACATCCATCATTATGGTTCTGGAGCAAAAATAAAGAGATCATATACAAAGCAACACAACTTGCCCACACCAGCACGGGGCCACTTTGGACAAATGCTTGGTGGAAAGGAAATAAATCCATCATCTGAGTTATGCCCAGTTGATTCTTCCACATCAATCTCAAAATTCCATGGGAAAGAAAAGTTCTCTAGCAAAAGAAAGGAGACAAGAGAAGCAGAAGTTGGGTTGGATTTACATCCTATGCAATCTGTCTTTTTGGGGCCTGATCGAAGGTATAATAGATACTGGCTTTTCTTAGGCCCTTGTAATGCAAATGATCCTGGTCACAAGAGGGTGTACTTTGAATCTTCTGAAGATGGTCACTGGGAGGTGATTGATACTGAAGAGGCTTTTTGTGCCTTGCTGTCAGTGTTGGATGGCAGGGGTAAGCGGGAGGCTTTTCTTCTTGCATCTTTAGAGAAACGGAAAGCTTCTCTCTGCCAAGAAATGTCAAGCAGAATAGCAATCCATTCTGGAAGCACGTCATTGACACAATATGATAGATCTGACCTGTATATGATTAGAGAAGATAGTTCTTCTCCAGTATCTGATATAGTAGACAACCCATGCGCAACTGATATTACCAATGATTTTTTGGCTTCATCTGGTGCCATAGTTCTTGGAGTTGGAAAGAAGGGAGAAGAGCAAAAACAAAGATGGCGCCGGCTCCAGGAATTTGATGCATGGATATGGAGTTCTTTTTACTCTGATCTTAATGCTGTAAAACATGGCAAGAGGACTTATCTTGATTCACTCGCTAGATGTGAAAGTTGTCATGATCTGTATTGGCGGGATGAAAAGCACTGTAAAACTTGTCATACCACTTTTGAGCTTGATTTTGATCTCGAAGAAAAATATGCGATTCATATAGCGACATGCAGGGAGAAAGAAGACAATGACATGTTTCCAAAGCATAAGGTGCTATCATCACAGTTACAGTCATTGAAAGCTGCAATTCACGCAATTGAGTCAGTCATGCCTGAAGATGCCTTAGTGGAGGCTTGGTCAAAATCTGCTCATAAGCTTTGGGTCAGACGCCTCAGACGCACTTCATATTTGACAGAGCTTTTGCAGGTTCTTGCTGATTTTGTTGGTGCCATCAAAGAGGACTGGTTGTGTCAGTCCGATGTTGTGCTAGGTTCTAATAATCTTTTGGAAGAAATTGTTGTATCATTTTCAACTATGCCCCAAACATCATCTGCAGTTGCACTCTGGTTGGTGAAGTTGGATGCCTTGATTGCACCCCATCTGGAGAGGGTTCAACTTCATTCTAAAAAGAGAACAAGAAATTAG 3567 40.57 MGTNEVAIIEDHGTINTNTNSIRRKTPLQLKTLESLYSEDNYPTQRVMKDYAAALGLTYKQVRGWFFERRRKEKNENGMGVSSRNMSSSSTYNRACLGAHHWHCFRNHDSRAVERGKILNEDLSTTDYILKKVFRKDGPPLGVEFDSLPSSSFCHCTDSRNSHRTCQENQTSSKRRKVVVSKPAVLHQQFCNNKSAPAKIHGIGKGLMTVWRATNPGAGDFPTGIDFADGQVAAVSPTSTSILRKSLIKKKKPRKQSSVTKWKSVGGKLNDKKKPSRKRGKVECNKDVNQKKPNKEKCELALEEGKSQEHLDQFAMLMDDEELELQESQAGPNPVTCSAHFATNGLHGCSLCKDLLAKFPPNAVKMKQPFCMQPWDSSPELVKKMFKVLHFLYTYSVVVDVCPFTLDEFAQAFHDEDSLLLGKVHLALLNLLLSDVETELSSGFLPHVIKNCKFLGLLQSVGQNEFVLKFWKRSLNPLTWTEILRQVLVAAGFGSRKGTLRREALDKKAGLKGRVVPFCLMVDCLLKCLLPFYFPLAPMFELNPMVKYGLRPGTLKGELFSILSNQGNNGMKVPDLARCVQISELNLAGTTDELELLIYSTLSSDITLYEKISSSSYRLRITSHTNEAENFQSDTDDSGSIDDDSKDSRKYSSSDDSDSDSGTSNLGKLNYMNHHKQRNGMLTIYTEIDESNPGEVWLLGLMEGEYSDLSIEEKLNALMALVDLVSGGSSIRMEDLTKAVVEYVPNIHHYGSGAKIKRSYTKQHNLPTPARGHFGQMLGGKEINPSSELCPVDSSTSISKFHGKEKFSSKRKETREAEVGLDLHPMQSVFLGPDRRYNRYWLFLGPCNANDPGHKRVYFESSEDGHWEVIDTEEAFCALLSVLDGRGKREAFLLASLEKRKASLCQEMSSRIAIHSGSTSLTQYDRSDLYMIREDSSSPVSDIVDNPCATDITNDFLASSGAIVLGVGKKGEEQKQRWRRLQEFDAWIWSSFYSDLNAVKHGKRTYLDSLARCESCHDLYWRDEKHCKTCHTTFELDFDLEEKYAIHIATCREKEDNDMFPKHKVLSSQLQSLKAAIHAIESVMPEDALVEAWSKSAHKLWVRRLRRTSYLTELLQVLADFVGAIKEDWLCQSDVVLGSNNLLEEIVVSFSTMPQTSSAVALWLVKLDALIAPHLERVQLHSKKRTRN* 1189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 22688698 22717134 + Vvi19g1131 Vvi19g1131 782630

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1131 1188 MobiDBLite consensus disorder prediction 266 290 - -
Vvi19g1131 1188 MobiDBLite consensus disorder prediction 657 672 - -
Vvi19g1131 1188 Pfam DDT domain 380 435 IPR018501 -
Vvi19g1131 1188 ProSiteProfiles 'Homeobox' domain profile. 26 76 IPR001356 GO:0003677
Vvi19g1131 1188 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 694 733 IPR028942 -
Vvi19g1131 1188 PANTHER OS07G0619600 PROTEIN 11 509 - -
Vvi19g1131 1188 PANTHER OS07G0619600 PROTEIN 541 1183 - -
Vvi19g1131 1188 SUPERFAMILY Homeodomain-like 19 76 IPR009057 -
Vvi19g1131 1188 SMART testlast3 379 438 IPR018501 -
Vvi19g1131 1188 MobiDBLite consensus disorder prediction 642 656 - -
Vvi19g1131 1188 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 541 1183 IPR044977 GO:0006357
Vvi19g1131 1188 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 11 509 IPR044977 GO:0006357
Vvi19g1131 1188 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 827 901 IPR028941 -
Vvi19g1131 1188 Gene3D - 12 93 - -
Vvi19g1131 1188 MobiDBLite consensus disorder prediction 629 672 - -
Vvi19g1131 1188 SMART HOX_1 19 80 IPR001356 GO:0003677
Vvi19g1131 1188 CDD homeodomain 23 77 IPR001356 GO:0003677
Vvi19g1131 1188 ProSiteProfiles DDT domain profile. 379 438 IPR018501 -
Vvi19g1131 1188 MobiDBLite consensus disorder prediction 246 290 - -
Vvi19g1131 1188 Pfam Homeodomain 25 75 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1131 - - - vvi:100241125 2216.42
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1131 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008317 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 1 0 1 1 4 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14396 PF15613 WSD 2.40E-12 No_clan Vvi TF