Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1132 ATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCTAAAATACCAGAAGGTGGGGTTCTCCTCCTTGAGAATGTGAGGTTTTACAAGGAGGAAGAGAAGAATGACCCTGAATTTGCCAAGAAGCTAGCTTCACTTGCAGATCTCTATGTGAATGATGCATTTGGAACCGCTCACAGAGCCCATGCATCTACAGAGGGAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCTGCAATTGTTGGTGGCTCGAAGGTGTCATCGAAAATTGGAGTGATTGAATCCTTGTTGGGGAAGGTTGATGTCCTGCTTTTGGGTGGAGGAATGATCTTTACCTTTTACAAGGCCCAAGGTTACGGTGTTGGTTCCTCCCTTGTAGAGGAAGACAAGCTGGATCTTGCAACTTCACTTCTTGAAAAGGCCAAGTCCAAAGGTGTCTCACTACTTCTCCCCGCAGATGTTGTGATTGCTGACAAGTTTGCTGCTGATGCTAACAGCAAGGTTGTCCCTGCATCCTGTATTCCAGATGGTTGGATGGGGCTGGATATCGGACCTGACTCTATCAAGACTTTTGGCGAATCTTTAGATACTACCAAAACCATCATTTGGAATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAGGCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATAATCGGAGGTGGTGATTCTGTTGCTGCTGTAGAGAAGGTTGGGCTCGCTGAAAAGATGAGCCACATCTCAACCGGCGGTGGTGCCAGCTTGGAGTTGCTGGAGGGGAAGACATTGCCTGGAGTCCTTGCACTTGACGACGCCTGA 1050 47.9 MGHGAKVILASHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVKILVAKIPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVAKYLKPSVAGFLMQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLGKVDVLLLGGGMIFTFYKAQGYGVGSSLVEEDKLDLATSLLEKAKSKGVSLLLPADVVIADKFAADANSKVVPASCIPDGWMGLDIGPDSIKTFGESLDTTKTIIWNGPMGVFEFDKFALGTEAIAKKLADLSEKGVTTIIGGGDSVAAVEKVGLAEKMSHISTGGGASLELLEGKTLPGVLALDDA* 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 22721759 22727850 - Vvi19g1132 Vvi19g1132 782631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1132 349 PIRSF Pgk 1 349 IPR001576 GO:0004618|GO:0006096
Vvi19g1132 349 CDD Phosphoglycerate_kinase 3 348 IPR001576 GO:0004618|GO:0006096
Vvi19g1132 349 Pfam Phosphoglycerate kinase 3 338 IPR001576 GO:0004618|GO:0006096
Vvi19g1132 349 Gene3D - 122 338 IPR015824 GO:0004618|GO:0006096
Vvi19g1132 349 Hamap Phosphoglycerate kinase [pgk]. 2 348 IPR001576 GO:0004618|GO:0006096
Vvi19g1132 349 Gene3D - 3 346 IPR015824 GO:0004618|GO:0006096
Vvi19g1132 349 SUPERFAMILY Phosphoglycerate kinase 2 348 IPR036043 GO:0004618|GO:0006096
Vvi19g1132 349 PRINTS Phosphoglycerate kinase family signature 19 41 IPR001576 GO:0004618|GO:0006096
Vvi19g1132 349 PRINTS Phosphoglycerate kinase family signature 265 290 IPR001576 GO:0004618|GO:0006096
Vvi19g1132 349 PRINTS Phosphoglycerate kinase family signature 301 312 IPR001576 GO:0004618|GO:0006096
Vvi19g1132 349 PRINTS Phosphoglycerate kinase family signature 324 341 IPR001576 GO:0004618|GO:0006096
Vvi19g1132 349 PANTHER PHOSPHOGLYCERATE KINASE 3 349 IPR001576 GO:0004618|GO:0006096
Vvi19g1132 349 PANTHER PHOSPHOGLYCERATE KINASE, CYTOSOLIC 3 349 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1132 K00927 - vvi:100244419 674.855