Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1132 ATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAGGTTAAAATGGCAAATGATTGTATTGGTGAGGAAGTCAAGATATTGGTGGCTAAAATACCAGAAGGTGGGGTTCTCCTCCTTGAGAATGTGAGGTTTTACAAGGAGGAAGAGAAGAATGACCCTGAATTTGCCAAGAAGCTAGCTTCACTTGCAGATCTCTATGTGAATGATGCATTTGGAACCGCTCACAGAGCCCATGCATCTACAGAGGGAGTTGCTAAATACTTGAAACCTTCGGTTGCTGGCTTCCTCATGCAGAAGGAACTTGACTACCTTGTTGGAGCTGTGTCAAACCCCAAGAGGCCATTTGCTGCAATTGTTGGTGGCTCGAAGGTGTCATCGAAAATTGGAGTGATTGAATCCTTGTTGGGGAAGGTTGATGTCCTGCTTTTGGGTGGAGGAATGATCTTTACCTTTTACAAGGCCCAAGGTTACGGTGTTGGTTCCTCCCTTGTAGAGGAAGACAAGCTGGATCTTGCAACTTCACTTCTTGAAAAGGCCAAGTCCAAAGGTGTCTCACTACTTCTCCCCGCAGATGTTGTGATTGCTGACAAGTTTGCTGCTGATGCTAACAGCAAGGTTGTCCCTGCATCCTGTATTCCAGATGGTTGGATGGGGCTGGATATCGGACCTGACTCTATCAAGACTTTTGGCGAATCTTTAGATACTACCAAAACCATCATTTGGAATGGACCTATGGGTGTGTTTGAGTTCGATAAGTTTGCATTGGGAACAGAGGCAATAGCCAAGAAGTTGGCAGACCTAAGTGAGAAGGGGGTGACAACTATAATCGGAGGTGGTGATTCTGTTGCTGCTGTAGAGAAGGTTGGGCTCGCTGAAAAGATGAGCCACATCTCAACCGGCGGTGGTGCCAGCTTGGAGTTGCTGGAGGGGAAGACATTGCCTGGAGTCCTTGCACTTGACGACGCCTGA 1050 47.9 MGHGAKVILASHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVKILVAKIPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVAKYLKPSVAGFLMQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLGKVDVLLLGGGMIFTFYKAQGYGVGSSLVEEDKLDLATSLLEKAKSKGVSLLLPADVVIADKFAADANSKVVPASCIPDGWMGLDIGPDSIKTFGESLDTTKTIIWNGPMGVFEFDKFALGTEAIAKKLADLSEKGVTTIIGGGDSVAAVEKVGLAEKMSHISTGGGASLELLEGKTLPGVLALDDA* 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 22721759 22727850 - Vvi19g1132 Vvi19g1132 782631

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1132 349 PIRSF Pgk 1 349 IPR001576 GO:0004618|GO:0006096
Vvi19g1132 349 CDD Phosphoglycerate_kinase 3 348 IPR001576 GO:0004618|GO:0006096
Vvi19g1132 349 Pfam Phosphoglycerate kinase 3 338 IPR001576 GO:0004618|GO:0006096
Vvi19g1132 349 Gene3D - 122 338 IPR015824 GO:0004618|GO:0006096
Vvi19g1132 349 Hamap Phosphoglycerate kinase [pgk]. 2 348 IPR001576 GO:0004618|GO:0006096
Vvi19g1132 349 Gene3D - 3 346 IPR015824 GO:0004618|GO:0006096
Vvi19g1132 349 SUPERFAMILY Phosphoglycerate kinase 2 348 IPR036043 GO:0004618|GO:0006096
Vvi19g1132 349 PRINTS Phosphoglycerate kinase family signature 19 41 IPR001576 GO:0004618|GO:0006096
Vvi19g1132 349 PRINTS Phosphoglycerate kinase family signature 265 290 IPR001576 GO:0004618|GO:0006096
Vvi19g1132 349 PRINTS Phosphoglycerate kinase family signature 301 312 IPR001576 GO:0004618|GO:0006096
Vvi19g1132 349 PRINTS Phosphoglycerate kinase family signature 324 341 IPR001576 GO:0004618|GO:0006096
Vvi19g1132 349 PANTHER PHOSPHOGLYCERATE KINASE 3 349 IPR001576 GO:0004618|GO:0006096
Vvi19g1132 349 PANTHER PHOSPHOGLYCERATE KINASE, CYTOSOLIC 3 349 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1132 K00927 PGK, pgk; phosphoglycerate kinase [EC:2.7.2.3] - vvi:100244419 674.855
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1132 Blo04g00465 . . . Bpe07g00471 . . . . . . . . . Sed04g3516 . . Bhi05g01998 Tan02g0042 Cmetu01g1031 Lac12g0043 Hepe02g0016 . . . . . . . . . . . . . . . . . Blo15g00633 . . . . . Bma03g00497 . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00859 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001509 2 3 3 3 3 2 4 2 2 2 2 2 3 2 2 4 2 4 4 1 2 2 2 2 2 1 2 3 2 2 72