Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1133 ATGGCCAAGAAGAGCGTGGGTGACCTCACGGGGGCGGATTTGAAGGGGAAGAAGGTGTTTGTGAGGGTGGATTTGAATGTGCCTCTTGATGACAACCAGAAGATTACTGACGATACCAGGGTTCGAGCTGCCATTCCCACTATCAAGTATTTGATCGACAATGGTGCTAAAGTCATTCTTTCTAGCCATTTGGGAAGACCAAAGGGAGTAACTCCAAAATTCAGCTTGGCGCCTCTTGTGCCAAGGTTATCTGAGCTTCTTGGCATTCAGATTGTGAAGGCTGATGACTGTATTGGCCCAGAGGTAGAAAAGTTAGTGACTGCACTTCCTGATGGTGGTGTACTCCTTCTCGAGAATGTGAGGTTTTACAAGGAGGAAGAAAAGAATGAACCCGAATTTGCAAAGAAGCTTGCCTCCATAGCTGATCTCTATGTGAATGATGCATTTGGTACTGCACATAGAGCCCATGCCTCAACTGAGGGGGTCACTAAGTTCTTGAAGCCATCTGTTGCTGGTTTCCTTTTACAGAAGGAACTGGACTATCTCGTTGGGGCAGTTTCAAGCCCAAAGAGGCCATTTGCTGCCATTGTGGGTGGTTCAAAGGTCTCATCCAAGATCGGAGTCATTGAATCTCTCCTCGAAAAGTGTGATATCCTACTTCTAGGTGGAGGAATGATCTTCACATTTTACAAGGCACAGGGTCTCTCAGTGGGTTCATCCCTGGTAGAGGAAGATAAGCTAAGCCTTGCTACATCACTTCTCGAGAAGGCCAAGGCAAAAGGAGTATCTCTCCTGCTACCCACCGATGTTGTGATTGCTGACAAGTTTGCCCCTGATGCAAACAGCAAGATTGTGCCAGCATCAGCCATTCCTGATGGATGGATGGGATTGGATATTGGACCTGATTCTATTAAGATATTCAATGAAGCTTTGGAGACCACCAAAACAGTTATCTGGAACGGACCGATGGGAGTGTTTGAGTTTGATAAGTTTGCAGAAGGAACAGTGGCCGTTGCAAAGAAGCTAGCGGAGCTGAGTGGGAAGGATGTGACAACAATCATTGGAGGTGGAGATTCTGTTGCAGCTGTGGAGAAAGTAGGAGTCGCTGATGTGATGAGCCACATATCAACGGGTGGAGGTGCCAGTTTGGAGTTGTTGGAAGGGAAAGAACTCCCTGGTGTTGTTGCCCTTGATGAAGCTACTCCAGTTCCAGTGTAA 1218 47.13 MAKKSVGDLTGADLKGKKVFVRVDLNVPLDDNQKITDDTRVRAAIPTIKYLIDNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQIVKADDCIGPEVEKLVTALPDGGVLLLENVRFYKEEEKNEPEFAKKLASIADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLSLATSLLEKAKAKGVSLLLPTDVVIADKFAPDANSKIVPASAIPDGWMGLDIGPDSIKIFNEALETTKTVIWNGPMGVFEFDKFAEGTVAVAKKLAELSGKDVTTIIGGGDSVAAVEKVGVADVMSHISTGGGASLELLEGKELPGVVALDEATPVPV* 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 22741009 22745951 - Vvi19g1133 Vvi19g1133 782632

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1133 405 Pfam Phosphoglycerate kinase 12 389 IPR001576 GO:0004618|GO:0006096
Vvi19g1133 405 Gene3D - 186 399 IPR015824 GO:0004618|GO:0006096
Vvi19g1133 405 Hamap Phosphoglycerate kinase [pgk]. 8 399 IPR001576 GO:0004618|GO:0006096
Vvi19g1133 405 Gene3D - 7 183 IPR015824 GO:0004618|GO:0006096
Vvi19g1133 405 ProSitePatterns Phosphoglycerate kinase signature. 18 28 IPR015911 GO:0004618|GO:0006096
Vvi19g1133 405 PRINTS Phosphoglycerate kinase family signature 13 29 IPR001576 GO:0004618|GO:0006096
Vvi19g1133 405 PRINTS Phosphoglycerate kinase family signature 35 57 IPR001576 GO:0004618|GO:0006096
Vvi19g1133 405 PRINTS Phosphoglycerate kinase family signature 112 127 IPR001576 GO:0004618|GO:0006096
Vvi19g1133 405 PRINTS Phosphoglycerate kinase family signature 140 162 IPR001576 GO:0004618|GO:0006096
Vvi19g1133 405 PRINTS Phosphoglycerate kinase family signature 171 193 IPR001576 GO:0004618|GO:0006096
Vvi19g1133 405 PRINTS Phosphoglycerate kinase family signature 194 213 IPR001576 GO:0004618|GO:0006096
Vvi19g1133 405 PRINTS Phosphoglycerate kinase family signature 316 341 IPR001576 GO:0004618|GO:0006096
Vvi19g1133 405 PRINTS Phosphoglycerate kinase family signature 352 363 IPR001576 GO:0004618|GO:0006096
Vvi19g1133 405 PRINTS Phosphoglycerate kinase family signature 375 392 IPR001576 GO:0004618|GO:0006096
Vvi19g1133 405 SUPERFAMILY Phosphoglycerate kinase 8 399 IPR036043 GO:0004618|GO:0006096
Vvi19g1133 405 PANTHER PHOSPHOGLYCERATE KINASE 1 400 - -
Vvi19g1133 405 PIRSF Pgk 1 404 IPR001576 GO:0004618|GO:0006096
Vvi19g1133 405 PANTHER PHOSPHOGLYCERATE KINASE 1 400 IPR001576 GO:0004618|GO:0006096
Vvi19g1133 405 CDD Phosphoglycerate_kinase 9 399 IPR001576 GO:0004618|GO:0006096
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1133 K00927 PGK, pgk; phosphoglycerate kinase [EC:2.7.2.3] - vvi:100249576 782.326
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1133 . . . . . . Bma08g00819 . . . . . . . . . Cpe16g00710 Bhi05g01997 . . . . . . . . . . . . . . . . . . . . . . . . . Bpe15g00916 . . Bma12g00579 . . . . . . . . Cpe05g01034 . . . . . . . . . . . . . . . Csa06g01152 . Cme01g01511
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001509 2 3 3 3 3 2 4 2 2 2 2 2 3 2 2 4 2 4 4 1 2 2 2 2 2 1 2 3 2 2 72