Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1133 ATGGCCAAGAAGAGCGTGGGTGACCTCACGGGGGCGGATTTGAAGGGGAAGAAGGTGTTTGTGAGGGTGGATTTGAATGTGCCTCTTGATGACAACCAGAAGATTACTGACGATACCAGGGTTCGAGCTGCCATTCCCACTATCAAGTATTTGATCGACAATGGTGCTAAAGTCATTCTTTCTAGCCATTTGGGAAGACCAAAGGGAGTAACTCCAAAATTCAGCTTGGCGCCTCTTGTGCCAAGGTTATCTGAGCTTCTTGGCATTCAGATTGTGAAGGCTGATGACTGTATTGGCCCAGAGGTAGAAAAGTTAGTGACTGCACTTCCTGATGGTGGTGTACTCCTTCTCGAGAATGTGAGGTTTTACAAGGAGGAAGAAAAGAATGAACCCGAATTTGCAAAGAAGCTTGCCTCCATAGCTGATCTCTATGTGAATGATGCATTTGGTACTGCACATAGAGCCCATGCCTCAACTGAGGGGGTCACTAAGTTCTTGAAGCCATCTGTTGCTGGTTTCCTTTTACAGAAGGAACTGGACTATCTCGTTGGGGCAGTTTCAAGCCCAAAGAGGCCATTTGCTGCCATTGTGGGTGGTTCAAAGGTCTCATCCAAGATCGGAGTCATTGAATCTCTCCTCGAAAAGTGTGATATCCTACTTCTAGGTGGAGGAATGATCTTCACATTTTACAAGGCACAGGGTCTCTCAGTGGGTTCATCCCTGGTAGAGGAAGATAAGCTAAGCCTTGCTACATCACTTCTCGAGAAGGCCAAGGCAAAAGGAGTATCTCTCCTGCTACCCACCGATGTTGTGATTGCTGACAAGTTTGCCCCTGATGCAAACAGCAAGATTGTGCCAGCATCAGCCATTCCTGATGGATGGATGGGATTGGATATTGGACCTGATTCTATTAAGATATTCAATGAAGCTTTGGAGACCACCAAAACAGTTATCTGGAACGGACCGATGGGAGTGTTTGAGTTTGATAAGTTTGCAGAAGGAACAGTGGCCGTTGCAAAGAAGCTAGCGGAGCTGAGTGGGAAGGATGTGACAACAATCATTGGAGGTGGAGATTCTGTTGCAGCTGTGGAGAAAGTAGGAGTCGCTGATGTGATGAGCCACATATCAACGGGTGGAGGTGCCAGTTTGGAGTTGTTGGAAGGGAAAGAACTCCCTGGTGTTGTTGCCCTTGATGAAGCTACTCCAGTTCCAGTGTAA 1218 47.13 MAKKSVGDLTGADLKGKKVFVRVDLNVPLDDNQKITDDTRVRAAIPTIKYLIDNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQIVKADDCIGPEVEKLVTALPDGGVLLLENVRFYKEEEKNEPEFAKKLASIADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLSLATSLLEKAKAKGVSLLLPTDVVIADKFAPDANSKIVPASAIPDGWMGLDIGPDSIKIFNEALETTKTVIWNGPMGVFEFDKFAEGTVAVAKKLAELSGKDVTTIIGGGDSVAAVEKVGVADVMSHISTGGGASLELLEGKELPGVVALDEATPVPV* 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 22741009 22745951 - Vvi19g1133 Vvi19g1133 782632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1133 405 Pfam Phosphoglycerate kinase 12 389 IPR001576 GO:0004618|GO:0006096
Vvi19g1133 405 Gene3D - 186 399 IPR015824 GO:0004618|GO:0006096
Vvi19g1133 405 Hamap Phosphoglycerate kinase [pgk]. 8 399 IPR001576 GO:0004618|GO:0006096
Vvi19g1133 405 Gene3D - 7 183 IPR015824 GO:0004618|GO:0006096
Vvi19g1133 405 ProSitePatterns Phosphoglycerate kinase signature. 18 28 IPR015911 GO:0004618|GO:0006096
Vvi19g1133 405 PRINTS Phosphoglycerate kinase family signature 13 29 IPR001576 GO:0004618|GO:0006096
Vvi19g1133 405 PRINTS Phosphoglycerate kinase family signature 35 57 IPR001576 GO:0004618|GO:0006096
Vvi19g1133 405 PRINTS Phosphoglycerate kinase family signature 112 127 IPR001576 GO:0004618|GO:0006096
Vvi19g1133 405 PRINTS Phosphoglycerate kinase family signature 140 162 IPR001576 GO:0004618|GO:0006096
Vvi19g1133 405 PRINTS Phosphoglycerate kinase family signature 171 193 IPR001576 GO:0004618|GO:0006096
Vvi19g1133 405 PRINTS Phosphoglycerate kinase family signature 194 213 IPR001576 GO:0004618|GO:0006096
Vvi19g1133 405 PRINTS Phosphoglycerate kinase family signature 316 341 IPR001576 GO:0004618|GO:0006096
Vvi19g1133 405 PRINTS Phosphoglycerate kinase family signature 352 363 IPR001576 GO:0004618|GO:0006096
Vvi19g1133 405 PRINTS Phosphoglycerate kinase family signature 375 392 IPR001576 GO:0004618|GO:0006096
Vvi19g1133 405 SUPERFAMILY Phosphoglycerate kinase 8 399 IPR036043 GO:0004618|GO:0006096
Vvi19g1133 405 PANTHER PHOSPHOGLYCERATE KINASE 1 400 - -
Vvi19g1133 405 PIRSF Pgk 1 404 IPR001576 GO:0004618|GO:0006096
Vvi19g1133 405 PANTHER PHOSPHOGLYCERATE KINASE 1 400 IPR001576 GO:0004618|GO:0006096
Vvi19g1133 405 CDD Phosphoglycerate_kinase 9 399 IPR001576 GO:0004618|GO:0006096
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1133 K00927 - vvi:100249576 782.326