Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1135 ATGAGGATAACAAAAACATTGGTTGAGTCAATCACTTCGAAAACTCCTGAGGTCAATGACTTAAACTTGCTTCAAGTTAGCCTGAGAGATAAAGTGGTTGGGCATCGGTTTTTGCTTGTTTTGGATGATGTTTGGAGCAAGAGAAATAAGGGCTGGGATTTGCTCTTGAATCCTTTAAGAGCAGGAGCACCAGGAAGTAAGATTATAGTAACAACACGCAATGCAGATGTTGCATCAAGCATAGGCACAGTTCCGGCTCATCATCTGAAAGGTCTATCATTTGAAGATTGTTGGTCATTGTTCAAGAGTCAAGCATTTGAAGATAGGAACATTGATGCTCACCCCAATTTGGAAGTGATTGGTAGGGAGATAGTGAAAAAATGTGATGGTTTGCCACTGGCAGCAAAGAGGTTGGGGGTCCTTTTGCGCACGAGAGTAGAAGAACATGAATGGAGGGATATTTTGAATAAAAAGATATGGGATTTACCAGATGATGAAAGGGAAATCCTTCAGACTCTAAGATTGAGCTATGATCATCTTCCTGCACATTTGAAGCAGTGCTTTGCCTACTGTGCGATATTCCCAAAAGACTACGAATTCAAGAAGGACTCGCTAGTTCTATTATGGATAGCAGAAGGTTTTGTGCAACAACCAAAAGGGAATAAAAGATTGGAAGAGGCAGGGGGTGAATATTTTCAGGATCTAGTATCAAGGTCATTCTTTCAGCAATCCTCTAATGATAAATCATGTTTTGTAATGCATGACCTCATGAAAGACTTAGCTCAGTTTGTTTCACGAGATATATGTTTCAGATTGGAGGATATGCTGAAAGATGGAAATCCATGTAAAGTCTTTGAAAAGGCCCGCCATTCCTCTTACATTCGTGGAAAACGCGATGTTCTCACTAAATTTGAGGCCTTCAATGGACTCGAGTGCTTACGGTCCTTCCTACCACTGGATCCAATGGGCAAAACTGGAGTCAGCTATTTGGCCAATAAGGTTCCTAGCGATCTCTTGCCAAAGTTGAGATGTTTACGGGTTCTATCTTTCAATGGTTATCGCATCACTGAATTGCCGGATTCAATTGGCAACTTGAGACATTTAAGGTACTTGGACCTTTCTCACACTGCAATTAAGTACTTGCCTGAATCAGCAAGTACTCTCTACAATTTACAAGCATTAATCTTGTTACAGTGTCACTCTCTCAGTATGTTACCTACAAACATGGGTAACCTAACAAACCTACGGCATCTATGCATTAGTGAAACCAGATTAAAAATGATGCCACTGCAAATGCATAGATTGACGAGTCTACAAACTCTCTCTCATTTTGTGGTGGGCAAAAATGGTGGGTCGGGAATAGGAGACCTGAGGAACATGTCGCATCTTCAGGGAAAGCTTCTCATGACAGGGCTGCAGAATGTGGCTAGTTTTTGGGATGCAGCAGAGGCTAAATTAAAGGACAAACATGAAATTGATGAGCTGGTGTTCCAATGGAGTAACAATTTTGATGATCTAACAAATGATAGGGTTGAAGAGGAAATGCTGCAACCTCATAACAACATAAAACAACTTGTGATCAAAGACTACAGAGGAACAAGATTTCCAGGCTGGATAGGAAATGCTTCCTACTCCAATATAATACGTTTAAAACTTAGCAACTGTAAAAAGTGTAAGTGTTTACCATCACTTGGGCAGCTACCGTCGCTCAAATACCTGACTATCAAAGGAATGGAAGGAATCAAGATGGTGGGCACCGAATTCTACAAGGATGGATGTTCTTCTCTTGTGCCGTTTCCATCATTGGAGACTTTGAAGTTTGAGAACATGTTGGAGTGGGAGGTATGGTCTTCCTCTGGACTTGAAGACCAGGAAGACTTCCATCACCTGCAAAAGATTGAAATCAAGGATTGTCCCAAGCTTAAAAAATTCTCACATCATTTCCCTTCCTTGGAAAAAATGAGCATTTTGCGCACACTCAAAAAACTTGAAATCCAGAACTGTATGAATCTGGATTCCCTTCCTGAGGACATGACTTCTGTTCAATTTTTGAAGATTTCAGCCTCAAGGCAAGAATTTCATCTTGTGCCCAAATCAAGAATTTTCTCAGAGCCACTCTTTCTTGCAGTGCCAACAACTCCCATTATTTCCAAAAGAGTGGCTGCCAGGTGTGTTTTCTCATCTTTGCAACCATCCATTAATCTGCATAATCCACACACGGTAAATCTACTGAAAGATGGTACTGCTGTGCTCTGTTTTATTCAGTAA 2268 40.87 MRITKTLVESITSKTPEVNDLNLLQVSLRDKVVGHRFLLVLDDVWSKRNKGWDLLLNPLRAGAPGSKIIVTTRNADVASSIGTVPAHHLKGLSFEDCWSLFKSQAFEDRNIDAHPNLEVIGREIVKKCDGLPLAAKRLGVLLRTRVEEHEWRDILNKKIWDLPDDEREILQTLRLSYDHLPAHLKQCFAYCAIFPKDYEFKKDSLVLLWIAEGFVQQPKGNKRLEEAGGEYFQDLVSRSFFQQSSNDKSCFVMHDLMKDLAQFVSRDICFRLEDMLKDGNPCKVFEKARHSSYIRGKRDVLTKFEAFNGLECLRSFLPLDPMGKTGVSYLANKVPSDLLPKLRCLRVLSFNGYRITELPDSIGNLRHLRYLDLSHTAIKYLPESASTLYNLQALILLQCHSLSMLPTNMGNLTNLRHLCISETRLKMMPLQMHRLTSLQTLSHFVVGKNGGSGIGDLRNMSHLQGKLLMTGLQNVASFWDAAEAKLKDKHEIDELVFQWSNNFDDLTNDRVEEEMLQPHNNIKQLVIKDYRGTRFPGWIGNASYSNIIRLKLSNCKKCKCLPSLGQLPSLKYLTIKGMEGIKMVGTEFYKDGCSSLVPFPSLETLKFENMLEWEVWSSSGLEDQEDFHHLQKIEIKDCPKLKKFSHHFPSLEKMSILRTLKKLEIQNCMNLDSLPEDMTSVQFLKISASRQEFHLVPKSRIFSEPLFLAVPTTPIISKRVAARCVFSSLQPSINLHNPHTVNLLKDGTAVLCFIQ* 756
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 22805627 22810184 + Vvi19g1135 Vvi19g1135 782634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1135 755 Pfam NB-ARC domain 15 178 IPR002182 GO:0043531
Vvi19g1135 755 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 191 IPR027417 -
Vvi19g1135 755 Gene3D - 182 262 IPR036388 -
Vvi19g1135 755 PANTHER DISEASE RESISTANCE PROTEIN RP 2 679 IPR044974 GO:0006952
Vvi19g1135 755 Gene3D Ribonuclease Inhibitor 324 701 IPR032675 -
Vvi19g1135 755 PRINTS Disease resistance protein signature 31 45 - -
Vvi19g1135 755 PRINTS Disease resistance protein signature 128 142 - -
Vvi19g1135 755 PRINTS Disease resistance protein signature 655 671 - -
Vvi19g1135 755 SUPERFAMILY L domain-like 252 684 - -
Vvi19g1135 755 Gene3D - 91 181 IPR042197 -
Vvi19g1135 755 Gene3D - 1 84 IPR027417 -
Vvi19g1135 755 PANTHER - 2 679 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1135 - - vvi:100249646 1134.4