Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1138 ATGGACCTCTCAATCCCTCACACGACACTATACCCATTTCACCTTTGTTCTTCGAAGCCACTGTTATTTAATCAAAACTCCTCAAATCTCGTTCTCTTCAAGCCACTCTCTTTACCTTCTTCTAATCGCAGAAGATCACGTCAGTACCACAAAAGACCAGTTTTTGTTGCTGCTTCGTCTGCAAACCCAAGTGGGCCAAATGGGTTTTCTTGGCTCGGTCTGGCTTATTCGATTCAGCGTGGGTCGGAGCGGTTCTGGGTGCAATTTGGGGGTCTGGTGAAGAGGGAAACTGGGTTTGACTTGGAAGATGCTAATTCGAAGGTGAACGAGTTTGTGGGCCCAGTTCGTGGTGCGATGAAGAGAGGTGAGGATGGGTTGGATCGGTTTAGGACTGAGTTGCTTCCAGAGTTTGTGAATTGGAATCGGTGGGAGCGTTGGAAGGATCTCAAGAATTGGGAAGCTAAACGAATTGGCGCCCTGATTCTCTATACATTTGTTGTGATAATATCTTTTCGAGGTATATATTTGGCATTTCAAGCCCCTCGTCTAGATCGTCAAAGAAAAGAGGTCACAGAGGCTTATATGGAGGCACTGATTCCTGAGCCATCTCCAAGTAATATTAGAAAGTTTAAAAAGGGCATGTGGAGGAAGACAATACCTAAAGGTCTGAAAATGAAGAAATTCATTGAAAGACCTGATGGAACCTTAATTCATGATAGTTCTTATGTTGGGGAAGATGCATGGAGTGATGATCCAGAGCCTCAGGACAATGTGAATCAAATTATTGACAGTAATGTAAAATTAAATGCAGAAGTAAAGAAAGAACTGAAGGAGGACTTGGGCATTTCAGGTAAAGATCAACAAAATAGTGGAACATGGCGTGAAAGGCTTAATACATGGAAGGAAATTCTCAAGAAGGATAAGTTAAAGGAGGATTTAGAATCCTTAAATGCCAAATATGCAGTTGAATTTGACATGAAAGAAGTGGAAAACAGCCTTCGCAAGGATGTGGTAGAAAAGGTACCAGAGTCAAATGGGACTAGAGCACTGTGGATTTCCAAGAGATGGTGGCGCTATCATGTGAAATTCATTCACACATTCTTTTTGCAAATGGGTGACTGCATGTTTTGCTCAGGTATTGTTGCTGCAATTGTCTTCACTGAGGATCTGAAAAAATTGTATGTAACAATGAGAGAAGGATTTCCCTTAGAATACATTGTTGATATTCCCCTTGACCCACACTTGTTTGAGATGATCTCAAGCTCTGGAGTTGAAGTAGATCTCCTTCAGAGGCGACAAATCCATTACATTTTTAAAGTTGTGATTGCATTGGTACCTGGAATATTGATCTTGTGGTGTATAAGAGAGTCTGTGATGCTTCTTCATGTTACTTCAAAGCGCTTTCTATATAAAAAGTATAATCAACTTTTTGATATGGCTTATGCAGAAAACTTTATCCTGCCAGTTGGAGATGGTGAAACAAAATCAATGTACAAAGAAGTAGTATTAGGGGGTGATGTTTGGGACCTTCTGGACGAGTTAATGATTTATATGGGAAACCCCATGCAGTACTATGAAAGAGGTGTACCATTTGTCCGGGGTGTTCTTCTCTCTGGTCCTCCGGGCACAGGAAAAACTCTTTTTGCACGGACGCTTGCAAAGGAAAGTGGGATGCCCTTTGTCTTTGCATCTGGTGCAGAGTTCACAGATAGTGAAAAAAGTGGTGCAGCAAGGATTAATGAAATGTTTTCAATTGCAAGGAGAAACGCTCCTTGTTTTGTATTTGTGGATGAAATTGATGCTATTGCTGGAAGGCATGCAAGGAAAGATCCACGAAGAAAGGCAACATTTGAGGCTTTGATAGCACAGCTTGAGGGAGAGAAGGAAAAAACTGGTGTTGATCGGTTTTCACTTAGACAAGCTGTGATATTCATCTGTGCTACCAATCGACCAGATGAATTGGACCTAGAATTTGTTCGTTCTGGACGCATTGACCGTCGGCTGTACATTGGTTTACCTGATGCAAAGCAGCGGGTACAAATTTTTGGTGTGCACAGTGCAGGAAAACAGCTTGCTGAAGATGTGGACTTTGGAAAACTTGTTTTCCGCACTGTTGGTTATTCTGGGGCAGATATTCGAAATCTTGTCAATGAAGGAGCAATAATGTCTGTGAGAAAAGGTCATTCCAAGATATACCAGCAGGATATTGTTGATGTGTTAGATAAACAATTGCTTGAGGGAATGGGCGTGCTCCTTACGGAGGAAGAGCAACAGAAATGCGAAGAAAGTGTGAGTTTTGAAAAGAAAAGACTGCTGGCTGTACATGAAGCTGGTCACATAGTGTTAGCTCACTTGTTTCCTCGATTTGACTGGCATGCATTTTCTCAGCTCCTGCCTGGTGGCAAGGAAACTGCAATATCTGTTTTTTACCCCAGAGAAGATATGTTAGACCAGGGTTACACGACCTTTGGCTATATGAAAATGCAAATGGTGGTTGCTCATGGTGGCCGATGTGCTGAACGTGTTGTGTTTGGCGATGAGATAACTGATGGAGGAAGGGATGACCTAGAAAAGATTACGAAGATTGCTAGAGAGATGGTAATCAGCCCAGCAAATTCAAGGTTGGGGCTTACTGCTTTGACAAAACGAGTGGGGTTAATGGATAGACCTGATAGTCCAGATGGCGAGTTAATAAAGTACAGGTGGGATGACCCTTTTGTGATTCCTGCCAACATGACACTTGAAGTATCTGAGCTGTTCAGTCGAGAATTAACAAGGTACATTGAAGAGACAGAAGAAATTGCAATGAGTGGTTTGAAGGTGAACAGGCACATATTGGATATGATTACAAACGAACTGTTGGAAAATTCAAGGATAACTGGATTGGAAGTTGATGAGAAAATGAAGGGACTCTCTCCAATAATGTTCGAGGATTTTGTGAAACCATTCCAAATAAACTTAGAAGAGGAGGGACCCTTGCCTCACAATGATCGGGTGAGATACCAGCCACTGGACATATATCCTGCTCCACTCCACAGATGTTAA 3045 42.1 MDLSIPHTTLYPFHLCSSKPLLFNQNSSNLVLFKPLSLPSSNRRRSRQYHKRPVFVAASSANPSGPNGFSWLGLAYSIQRGSERFWVQFGGLVKRETGFDLEDANSKVNEFVGPVRGAMKRGEDGLDRFRTELLPEFVNWNRWERWKDLKNWEAKRIGALILYTFVVIISFRGIYLAFQAPRLDRQRKEVTEAYMEALIPEPSPSNIRKFKKGMWRKTIPKGLKMKKFIERPDGTLIHDSSYVGEDAWSDDPEPQDNVNQIIDSNVKLNAEVKKELKEDLGISGKDQQNSGTWRERLNTWKEILKKDKLKEDLESLNAKYAVEFDMKEVENSLRKDVVEKVPESNGTRALWISKRWWRYHVKFIHTFFLQMGDCMFCSGIVAAIVFTEDLKKLYVTMREGFPLEYIVDIPLDPHLFEMISSSGVEVDLLQRRQIHYIFKVVIALVPGILILWCIRESVMLLHVTSKRFLYKKYNQLFDMAYAENFILPVGDGETKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVPFVRGVLLSGPPGTGKTLFARTLAKESGMPFVFASGAEFTDSEKSGAARINEMFSIARRNAPCFVFVDEIDAIAGRHARKDPRRKATFEALIAQLEGEKEKTGVDRFSLRQAVIFICATNRPDELDLEFVRSGRIDRRLYIGLPDAKQRVQIFGVHSAGKQLAEDVDFGKLVFRTVGYSGADIRNLVNEGAIMSVRKGHSKIYQQDIVDVLDKQLLEGMGVLLTEEEQQKCEESVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISVFYPREDMLDQGYTTFGYMKMQMVVAHGGRCAERVVFGDEITDGGRDDLEKITKIAREMVISPANSRLGLTALTKRVGLMDRPDSPDGELIKYRWDDPFVIPANMTLEVSELFSRELTRYIEETEEIAMSGLKVNRHILDMITNELLENSRITGLEVDEKMKGLSPIMFEDFVKPFQINLEEEGPLPHNDRVRYQPLDIYPAPLHRC* 1015
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 22854357 22885790 + Vvi19g1138 Vvi19g1138 782637

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1138 1014 CDD AAA 533 672 - -
Vvi19g1138 1014 SMART AAA_5 531 674 IPR003593 -
Vvi19g1138 1014 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 12, CHLOROPLASTIC 26 1014 - -
Vvi19g1138 1014 Pfam ATPase family associated with various cellular activities (AAA) 535 671 IPR003959 GO:0005524|GO:0016887
Vvi19g1138 1014 Pfam AAA+ lid domain 694 736 IPR041569 -
Vvi19g1138 1014 Pfam Peptidase family M41 764 965 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vvi19g1138 1014 Gene3D - 489 673 IPR027417 -
Vvi19g1138 1014 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 496 742 IPR027417 -
Vvi19g1138 1014 Gene3D Peptidase M41 757 972 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vvi19g1138 1014 PANTHER ATP-DEPENDENT PROTEASE 26 1014 - -
Vvi19g1138 1014 SUPERFAMILY FtsH protease domain-like 766 978 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vvi19g1138 1014 Gene3D - 674 745 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1138 K03798 ftsH, hflB; cell division protease FtsH [EC:3.4.24.-] - vvi:100244978 1980.68
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1138 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme11g01629 Blo15g00635 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy11g01039 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009820 1 2 2 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 33