Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1139 ATGGAGTCACCGTTCAAAGCAGATGTACTGAAAGGGAAAGTGGCCCTTCTCACAGGAGGAGGATCGGGAATTGGGTTCGAGATATCCACCCAATTTGGGCTCCATGGAGCCTCCATCGCCATCATGGGTCGCCGCAAGCAAGTCCTTGACTCCGCCGTGTCAGGCCTCTGTTCCCAAGGAATTCCGGCTGTTGGATTTGTGGGTGATGTTCGCAAGCAGGAAGATGCAAAAAGAGTTGTGGAATCAACTGTCAAGCATTTTGGCAGGCTTGACATTCTTGTGAATGCTGCAGCTGGCAATTTTCTTGTCTCATCTGAGGATTTGTCCCCAAATGGGTTTCGAACAGTTATGGATATTGATTCTGTCGGTACATTTACTATGTGCCACGAAGCACTCAAGTATCTTAAGAAAGGAGGACCAGGAAGGAGCTTTTCTAGTGGTGGATCGATATTGAATATAAGTGCTACTTTGCATTATACAGCAGCTTGGTATCAAATCCATGTATCTGCAGCCAAGGCAGCGGTTGATGCCACAACTAGAAACTTGGCACTGGAATGGGGGACCGACTATGATATCAGAGTTAACGGGATTGCACCAGGCCCCATCGGTGATACTGCTGGCATGAGTAAACTTGCACCTGAAGAGATCAGCAATAAAGCTAGAGAGATTATGCCTCTGTATAAACTTGGGGAGAAATGGGATATCGCCATGGCTGCTCTCTACCTGGCTTCTGATGCTGGTAAATACATCAATGGAACCACTCTTGTAGTTGATGGAGGACTTTGGCTGAGCCGACCTCGCCATTTACCAAAAGAGGCAGTGAAGCAGCTCTCTAGAGCAGTGGAAAAGAGGTCCAGAGGTGTTCCTGTTGGGGTTCCAAAGAGCAAGCTATAG 894 47.87 MESPFKADVLKGKVALLTGGGSGIGFEISTQFGLHGASIAIMGRRKQVLDSAVSGLCSQGIPAVGFVGDVRKQEDAKRVVESTVKHFGRLDILVNAAAGNFLVSSEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKGGPGRSFSSGGSILNISATLHYTAAWYQIHVSAAKAAVDATTRNLALEWGTDYDIRVNGIAPGPIGDTAGMSKLAPEEISNKAREIMPLYKLGEKWDIAMAALYLASDAGKYINGTTLVVDGGLWLSRPRHLPKEAVKQLSRAVEKRSRGVPVGVPKSKL* 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 22886898 22896623 - Vvi19g1139 Vvi19g1139 782638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1139 297 PANTHER PEROXISOMAL 2,4-DIENOYL-COA REDUCTASE 1 297 IPR045017 GO:0008670|GO:0009062
Vvi19g1139 297 CDD TER_DECR_SDR_a 10 263 - -
Vvi19g1139 297 PANTHER PEROXISOMAL 2,4-DIENOYL-COA REDUCTASE-LIKE 1 297 - -
Vvi19g1139 297 Gene3D - 2 286 - -
Vvi19g1139 297 PRINTS Glucose/ribitol dehydrogenase family signature 14 31 IPR002347 -
Vvi19g1139 297 PRINTS Glucose/ribitol dehydrogenase family signature 88 99 IPR002347 -
Vvi19g1139 297 PRINTS Glucose/ribitol dehydrogenase family signature 142 158 IPR002347 -
Vvi19g1139 297 PRINTS Glucose/ribitol dehydrogenase family signature 168 187 IPR002347 -
Vvi19g1139 297 PRINTS Glucose/ribitol dehydrogenase family signature 190 207 IPR002347 -
Vvi19g1139 297 PRINTS Glucose/ribitol dehydrogenase family signature 225 245 IPR002347 -
Vvi19g1139 297 Pfam Enoyl-(Acyl carrier protein) reductase 22 261 - -
Vvi19g1139 297 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 IPR002347 -
Vvi19g1139 297 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 156 IPR002347 -
Vvi19g1139 297 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 187 IPR002347 -
Vvi19g1139 297 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 11 263 IPR036291 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1139 K13237 - vvi:100248493 578.17