Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1140 ATGGACGAAGAAACCTTGGTTGATGAAAACTTCCCCCTATTTTCCAAAAGGAAACCCACCCCTAAACCCTCCAAAAACTCCACCACCACCGCTCAAAACCCTAATCCAGAGCAACCGCTCACAAGAACCACCAACCCCACTTCACCATCTTCCACGTTCGCCGACCTCGGCCTCGCTGAATGGGCAGTGCAGGCCTGCAAAGAGCTCGGAATGCGACGGCCGACGCCGGTCCAGCACCACTGCATACCCCGAATCCTCGCCGGTGACGACGTGCTAGGGCTCGCCCAGACTGGGAGCGGCAAAACGGCGGCGTTTGCTCTGCCGATACTCCACCGCCTAGCGGAGGACCCTTTTGGGGTTTTCGCGCTGGTGGTGACGCCCACGCGGGAGCTGGCGTATCAGTTGGCCGAGCAGTTTCGGGCTCTCGGGTCGTGCTTGCATCTGCGGTGTGCGGTGGTGGTGGGTGGGATGGATATGATCAATCAGGCGCAGACTCTGATGCAACGGCCGCATGTGGTTATTGCCACTCCGGGGAGGGTTAAGGTTCTTCTTGAGCAGAATCCTGATATTCCTGCTGTTTTCGCCAGAACTAAGTTTCTGGTTTTGGATGAAGCTGATAGAGTTTTGGACGTGGGCTTTGAAGAGGAACTGAGAGTGGTGTTTCAGTGCTTGCCAAAAAATCGGCAGACTTTATTATTTTCTGCGACAATGACAAGTGACCTACAGACACTGCTTGAGCTTTCGTCAAATAAGGCATACTTCTATGAGGCATATGAAGGCTTCAAGACAGTTGAATCTCTTAAACAGCAGTATATTTTTGTCCCCAAAAATGTGAAGGATGTTTATCTTTTGCACATTTTATCCAAAATGGAAGAGATGGGTATTCGCTCTGCAATTATATTTGTTTCCACCTGCAGGAGTTGTCACCTTCTAAGTTTATTACTGGAAGAGCTTGATCTGGAAGTCGCAGCGCTGCATTCATTCAAATCCCAGTCTTTGAGGCTTGCTGCAGTACATCGATTCAAATCTGGACAGGTTCCAATATTGCTTGCAACTGATGTTGCAAGTCGTGGTTTGGACATTCCTACGGTTGATCTTGTTGTCAATTATGATATTCCAAGGTACCCAAGAGACTATGTTCATCGTGTGGGAAGAACCGCGAGAGCAGGTAGAGGAGGCCTGTCTTTGAGCATTGTTACCCAGAATGATGTAGACCTCATTCATGAAATAGAAGCTGTTCTTGGAAAGCAATTGGACAAGTTTGACTGTAAAGAGAAAGAAGTACTTGATAATATCACTAAGGTCTACAAAGCCAGACGTGTTGCAACAATGAAGATGATGGATGATGGCTTTGAGGAGAAAGCAAAAGCACGAAAAGCACAAAAACTCAAGACATTGGCAGAGAAAGGATTATTAAAGAAAAAGACCAGAAAGAGAAAAAGAGAAAAGGCAAGCAAAATAGGAGATTAA 1470 47.55 MDEETLVDENFPLFSKRKPTPKPSKNSTTTAQNPNPEQPLTRTTNPTSPSSTFADLGLAEWAVQACKELGMRRPTPVQHHCIPRILAGDDVLGLAQTGSGKTAAFALPILHRLAEDPFGVFALVVTPTRELAYQLAEQFRALGSCLHLRCAVVVGGMDMINQAQTLMQRPHVVIATPGRVKVLLEQNPDIPAVFARTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSSNKAYFYEAYEGFKTVESLKQQYIFVPKNVKDVYLLHILSKMEEMGIRSAIIFVSTCRSCHLLSLLLEELDLEVAALHSFKSQSLRLAAVHRFKSGQVPILLATDVASRGLDIPTVDLVVNYDIPRYPRDYVHRVGRTARAGRGGLSLSIVTQNDVDLIHEIEAVLGKQLDKFDCKEKEVLDNITKVYKARRVATMKMMDDGFEEKAKARKAQKLKTLAEKGLLKKKTRKRKREKASKIGD* 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 22897110 22905063 + Vvi19g1140 Vvi19g1140 782639

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1140 489 MobiDBLite consensus disorder prediction 20 51 - -
Vvi19g1140 489 CDD SF2_C_DEAD 267 399 - -
Vvi19g1140 489 SMART ultradead3 70 270 IPR014001 -
Vvi19g1140 489 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 282 429 IPR001650 -
Vvi19g1140 489 Gene3D - 262 488 IPR027417 -
Vvi19g1140 489 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 409 IPR027417 -
Vvi19g1140 489 MobiDBLite consensus disorder prediction 1 51 - -
Vvi19g1140 489 Pfam Helicase conserved C-terminal domain 282 390 IPR001650 -
Vvi19g1140 489 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 82 255 IPR014001 -
Vvi19g1140 489 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 201 209 IPR000629 -
Vvi19g1140 489 PANTHER ATP-DEPENDENT RNA HELICASE DDX49-RELATED 51 482 - -
Vvi19g1140 489 MobiDBLite consensus disorder prediction 468 489 - -
Vvi19g1140 489 SMART helicmild6 309 390 IPR001650 -
Vvi19g1140 489 PANTHER RNA HELICASE 51 482 - -
Vvi19g1140 489 Gene3D - 16 256 IPR027417 -
Vvi19g1140 489 Pfam DEAD/DEAH box helicase 75 243 IPR011545 GO:0003676|GO:0005524
Vvi19g1140 489 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 51 79 IPR014014 GO:0003724
Vvi19g1140 489 CDD DEADc_DDX49 53 256 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1140 K14778 DDX49, DBP8; ATP-dependent RNA helicase DDX49/DBP8 [EC:3.6.4.13] - vvi:100267286 901.353
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1140 . . . . . . . . . . . . . . . . . . . . . . . . Cla02g01825 Cam02g1933 Cec02g1959 Cco02g2000 Clacu02g1914 Cmu02g1862 Cre02g2177 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009084 4 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34