Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1140 ATGGACGAAGAAACCTTGGTTGATGAAAACTTCCCCCTATTTTCCAAAAGGAAACCCACCCCTAAACCCTCCAAAAACTCCACCACCACCGCTCAAAACCCTAATCCAGAGCAACCGCTCACAAGAACCACCAACCCCACTTCACCATCTTCCACGTTCGCCGACCTCGGCCTCGCTGAATGGGCAGTGCAGGCCTGCAAAGAGCTCGGAATGCGACGGCCGACGCCGGTCCAGCACCACTGCATACCCCGAATCCTCGCCGGTGACGACGTGCTAGGGCTCGCCCAGACTGGGAGCGGCAAAACGGCGGCGTTTGCTCTGCCGATACTCCACCGCCTAGCGGAGGACCCTTTTGGGGTTTTCGCGCTGGTGGTGACGCCCACGCGGGAGCTGGCGTATCAGTTGGCCGAGCAGTTTCGGGCTCTCGGGTCGTGCTTGCATCTGCGGTGTGCGGTGGTGGTGGGTGGGATGGATATGATCAATCAGGCGCAGACTCTGATGCAACGGCCGCATGTGGTTATTGCCACTCCGGGGAGGGTTAAGGTTCTTCTTGAGCAGAATCCTGATATTCCTGCTGTTTTCGCCAGAACTAAGTTTCTGGTTTTGGATGAAGCTGATAGAGTTTTGGACGTGGGCTTTGAAGAGGAACTGAGAGTGGTGTTTCAGTGCTTGCCAAAAAATCGGCAGACTTTATTATTTTCTGCGACAATGACAAGTGACCTACAGACACTGCTTGAGCTTTCGTCAAATAAGGCATACTTCTATGAGGCATATGAAGGCTTCAAGACAGTTGAATCTCTTAAACAGCAGTATATTTTTGTCCCCAAAAATGTGAAGGATGTTTATCTTTTGCACATTTTATCCAAAATGGAAGAGATGGGTATTCGCTCTGCAATTATATTTGTTTCCACCTGCAGGAGTTGTCACCTTCTAAGTTTATTACTGGAAGAGCTTGATCTGGAAGTCGCAGCGCTGCATTCATTCAAATCCCAGTCTTTGAGGCTTGCTGCAGTACATCGATTCAAATCTGGACAGGTTCCAATATTGCTTGCAACTGATGTTGCAAGTCGTGGTTTGGACATTCCTACGGTTGATCTTGTTGTCAATTATGATATTCCAAGGTACCCAAGAGACTATGTTCATCGTGTGGGAAGAACCGCGAGAGCAGGTAGAGGAGGCCTGTCTTTGAGCATTGTTACCCAGAATGATGTAGACCTCATTCATGAAATAGAAGCTGTTCTTGGAAAGCAATTGGACAAGTTTGACTGTAAAGAGAAAGAAGTACTTGATAATATCACTAAGGTCTACAAAGCCAGACGTGTTGCAACAATGAAGATGATGGATGATGGCTTTGAGGAGAAAGCAAAAGCACGAAAAGCACAAAAACTCAAGACATTGGCAGAGAAAGGATTATTAAAGAAAAAGACCAGAAAGAGAAAAAGAGAAAAGGCAAGCAAAATAGGAGATTAA 1470 47.55 MDEETLVDENFPLFSKRKPTPKPSKNSTTTAQNPNPEQPLTRTTNPTSPSSTFADLGLAEWAVQACKELGMRRPTPVQHHCIPRILAGDDVLGLAQTGSGKTAAFALPILHRLAEDPFGVFALVVTPTRELAYQLAEQFRALGSCLHLRCAVVVGGMDMINQAQTLMQRPHVVIATPGRVKVLLEQNPDIPAVFARTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATMTSDLQTLLELSSNKAYFYEAYEGFKTVESLKQQYIFVPKNVKDVYLLHILSKMEEMGIRSAIIFVSTCRSCHLLSLLLEELDLEVAALHSFKSQSLRLAAVHRFKSGQVPILLATDVASRGLDIPTVDLVVNYDIPRYPRDYVHRVGRTARAGRGGLSLSIVTQNDVDLIHEIEAVLGKQLDKFDCKEKEVLDNITKVYKARRVATMKMMDDGFEEKAKARKAQKLKTLAEKGLLKKKTRKRKREKASKIGD* 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 22897110 22905063 + Vvi19g1140 Vvi19g1140 782639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1140 489 MobiDBLite consensus disorder prediction 20 51 - -
Vvi19g1140 489 CDD SF2_C_DEAD 267 399 - -
Vvi19g1140 489 SMART ultradead3 70 270 IPR014001 -
Vvi19g1140 489 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 282 429 IPR001650 -
Vvi19g1140 489 Gene3D - 262 488 IPR027417 -
Vvi19g1140 489 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 409 IPR027417 -
Vvi19g1140 489 MobiDBLite consensus disorder prediction 1 51 - -
Vvi19g1140 489 Pfam Helicase conserved C-terminal domain 282 390 IPR001650 -
Vvi19g1140 489 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 82 255 IPR014001 -
Vvi19g1140 489 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 201 209 IPR000629 -
Vvi19g1140 489 PANTHER ATP-DEPENDENT RNA HELICASE DDX49-RELATED 51 482 - -
Vvi19g1140 489 MobiDBLite consensus disorder prediction 468 489 - -
Vvi19g1140 489 SMART helicmild6 309 390 IPR001650 -
Vvi19g1140 489 PANTHER RNA HELICASE 51 482 - -
Vvi19g1140 489 Gene3D - 16 256 IPR027417 -
Vvi19g1140 489 Pfam DEAD/DEAH box helicase 75 243 IPR011545 GO:0003676|GO:0005524
Vvi19g1140 489 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 51 79 IPR014014 GO:0003724
Vvi19g1140 489 CDD DEADc_DDX49 53 256 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1140 K14778 - vvi:100267286 901.353