Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1141 ATGTTCTGGTCGAATCAAATGCAGGAAATTGAGCAAACAACTGATTTCAAGAACCACAGCCTCCCTCTTGCTCGGATCAAGAAAATAATGAAAGCTGATGAAGATAACAAAAGAAGAACACTTCAGAAGAACGATATTGCTGCTGCCATTTCAAGGACTGATGTTTTTGACTTCTTGGTTGATATTATTCCAAGAGATGAGCTGAAAGAGGAGGGTCTTGGGGCAGTTGTTGATCAATCATCGATATATGCTGCCCAACAGCCTCGACCTCCTGTGCCTTTCATGCCATGGCCACAGGCGCAGTCTCAGCCCCAGCAACCCCAACAGCAGCAAACAGATACTTGA 345 44.93 MFWSNQMQEIEQTTDFKNHSLPLARIKKIMKADEDNKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGAVVDQSSIYAAQQPRPPVPFMPWPQAQSQPQQPQQQQTDT* 115
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 22905486 22906558 - Vvi19g1141 Vvi19g1141 782640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1141 114 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 34 111 - -
Vvi19g1141 114 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 2 35 - -
Vvi19g1141 114 MobiDBLite consensus disorder prediction 84 114 - -
Vvi19g1141 114 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 34 111 - -
Vvi19g1141 114 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 2 35 - -
Vvi19g1141 114 SUPERFAMILY Histone-fold 7 59 IPR009072 GO:0046982
Vvi19g1141 114 Gene3D Histone, subunit A 1 36 IPR009072 GO:0046982
Vvi19g1141 114 Gene3D Histone, subunit A 37 65 IPR009072 GO:0046982
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1141 K08066 - vvi:100243367 157.147