Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1143 ATGGAACCTGGAAATGGGAAATTTTACCCTGAATCTCAGGGCTTTATGCTGGACCCAACAACTGCCATAAATACTGATACAAGACCTCCAGAGTTTAACAATTTGGAAGTTAAACCTGTGCGTAATTACTCCATACAGACAGGTGAGGAGTTTGCCCTGGAATTTATGCTTGATCGGGTGAATCCAAGGAATCAATTCATTCCAGATACTGCTGGTGATCCCCACTATGTACCAAAGTATACAGAATTGAAAGGGATTTTAGGCATCAATCATACAGGGTCTGAAAGTGGGTCAGATATCTCAATGCTTACAATTGTAGAAAGAGGCCCAAAAGAGTTTGAGAGAAAGAACTCTGCTTTATATGAAGACAGAAGTTACTATGGTTCTGTGCAATTGGTGCCACGGACTTCATCAGGGCATGATAGCAGTCGAGGAGTAATTCATGGGTATGCCTCTTCTGGAGCATCTGATAGCTCATCTACAAAGATGAAAGTTCTATGCAGCTTTGGTGGTAAAATCCTTCCCCGGCCTAGTGATGGAAAACTCAGATATGTTGGAGGTGAAACACGTATTATTCGTATAAGAAAGGACATTTCTTGGCAGGAGCTTGTGCAGAAAACGTTAATGGTCTTTAACCAAGCTCATATTATTAAGTATCAGCTTCCTGGGGAGGACCTTGATGCCTTAGTTTCTGTTTCTTGTGACGAGGATTTGCAGAACATGATGGAGGAATGTAATGAACTAGAAGATGGAGAAGGATCAAAGAAACTGAGGATGTTTCTGTTTTCTACAAGTGACTTGGATGATGCTTATTTTGGTCTGGACAGCACAGATGGTGATTCAGAGATTCAGTATGTTGTTGCTGTCAATGGCATGGACATGGGATCGAGAAAAAACTCAACTCTGCATGGTTTGGTAGGCTCTTCCTCAAATAATTTGGCTGATTTAGATGGGCAAAATATTGAGAGGAATGCCACTAGAGTTGCAACGGACTCTGTTGGCATCAGCACTCTGCCTTTGACAGGCACTATCGTCCCACCATCCACAATTCAATCTTCTCAACCAATTCTACCAAATTCTTCCATCTCCATTTCTTCACTGGATCAATTTCCTTCAGAAAATAAGGGAAAGCACCACAAACCTGTGGAGATCTCTTCTTCTGTTGATGCTATGAATCAGGCACAGGTTCCTAAATCTGATTATGATCATCATCCCGCATCAAGTAGTCCATTTGCTCCTGTATATGCTGACCCTGGGTCTGGTCTAATGGATTTGAGCTACCTGGAGCCACCTGTGCTTCCTCAGAGGGTCTATTATTCTGAAAGAGTTCCCCGGGAGCAGGCAGAGCTGCTCAATCGGTTATCAAAGTCTGACGATTCACTTGGTTCTCAGTTTCTTATATCCCACTCACGTTCTGATATTGAAAAGCAGGATTCAGTCGCCGAATCCACTGACAAACTGCGGAATGGAAATCTGGCTCCTCAAACTGAACAGTCCATCTCAACTGGAGAAGCTATGGTTGAGGATATGGCTGTTAAGGCTGACCATGGAACAACCGGCACCAAAGATATCCCTAGGAAACTCCTGCTTCATGGAACAACTGAACCTGGATCAGAACTGCCTGCAATGAATCAAGTTGCTTCTGTTAAGCACTGGAGCTCTGTTGGTGTTTCCACGCCTGAGCAGGGAGATATCCTTATTGATATCAATGACCGGTTCCCTCGTGATTTCCTTTCCGATATATTCTCCAAAGCTGTACATTTTGCAGATTCCCCTGACATTAGCAAACCACAAAAAGATGGAGCTGGCTTGAGCTTAAACATGGAAAATCGTGAACCTAAGCATTGGTCATACTTTCAGAAGCTAGCACAGGGTGGATTTGTTCAAAATGATGTTTCTCTTATGGATCAAGATCATCTTGGATTTTCATCGGTCCTTACAAAGGTCGAAGAAGAAGTGTCTAAACCTTATCAATTTACGCCTTTAATGGCAGATGAAGTTTTGATAGGCCAGTTGGAGTCACGAATAAGTTTTGGTGAAGAAAATCAGAAAGAATCACCACCTGGTAGGATTGCTGCTGACAGTACTGATTTGCATTCAGATTACAGTCCTTCTGAAATAAAGGAGAGTGACAGTGTACAATTTGATCGTATGATCGAGAACCTTAGAACACCAGATTCAGAGGGCGAGGATGGGAAAATGGAAACCAAGAATATTGGTCGACCTCCTCTAGATCCTTCTATTGGAGATTTTGATATCAATACTTTGCAGATCATAAAGAATGAAGATCTTGAAGAGCTGAAGGAACTGGGTTCTGGTACTTTTGGGACCGTCTATCATGGAAAATGGAGGGGATCAGATGTTGCCATTAAGCGAATAAAGAAGATCTGCTTCACAAGTCGTTCATCGGAGCAAGAAAGATTGACCATAGAATTCTGGCGAGAAGCTGATATTCTCTCAAAGCTTCACCATCCAAATGTGGTGGCATTTTACGGTGTAGTGCACGATGGACCGGGAGCAACGTTAGCCACTGTCACTGAGTACATGGTTGATGGTTCTCTTAGGCATGTTCTACTTCGCAAAGATAGGTATCTTGATCGCCGCAAGCGGCTCTTAATTGCTATGGATGCTGCATTTGGAATGGAATATTTGCACTCAAAGAATATTGTGCATTTTGATTTGAAATGTGACAACTTGCTTGTGAACTTGAAAGATCCCCTACGACCCATTTGCAAGGTTGGTGACTTTGGCCTGTCAAAAATAAAGCGAAATACTTTGGTTTCTGGTGGCGTAAGGGGGACCTTACCATGGATGGCACCAGAGCTGCTTAATGGTAGCAGCAATAAAGTTTCTGAAAAGGTTGATGTGTTCTCCTTTGGTATCGTGTTATGGGAGATTCTCACTGGCGAGGAACCATATGCCAACATGCACTATGGTGCAATCATAGGAGGCATTGTGAGCAACACATTGAGGCCAACCGTTCCAAGCTCCTGTGATCCCGAATGGAGAACCCTAATGGAGCAGTGCTGGGCTCCTAACCCTGCAGTCCGGCCATCTTTCACGGAAATCACCGGTCGCTTAAGGGTGATGTCTGCAGCAGCCCAAACTAAAACACCAGGTCATAAGGCTTCTAAATAA 3138 43.37 MEPGNGKFYPESQGFMLDPTTAINTDTRPPEFNNLEVKPVRNYSIQTGEEFALEFMLDRVNPRNQFIPDTAGDPHYVPKYTELKGILGINHTGSESGSDISMLTIVERGPKEFERKNSALYEDRSYYGSVQLVPRTSSGHDSSRGVIHGYASSGASDSSSTKMKVLCSFGGKILPRPSDGKLRYVGGETRIIRIRKDISWQELVQKTLMVFNQAHIIKYQLPGEDLDALVSVSCDEDLQNMMEECNELEDGEGSKKLRMFLFSTSDLDDAYFGLDSTDGDSEIQYVVAVNGMDMGSRKNSTLHGLVGSSSNNLADLDGQNIERNATRVATDSVGISTLPLTGTIVPPSTIQSSQPILPNSSISISSLDQFPSENKGKHHKPVEISSSVDAMNQAQVPKSDYDHHPASSSPFAPVYADPGSGLMDLSYLEPPVLPQRVYYSERVPREQAELLNRLSKSDDSLGSQFLISHSRSDIEKQDSVAESTDKLRNGNLAPQTEQSISTGEAMVEDMAVKADHGTTGTKDIPRKLLLHGTTEPGSELPAMNQVASVKHWSSVGVSTPEQGDILIDINDRFPRDFLSDIFSKAVHFADSPDISKPQKDGAGLSLNMENREPKHWSYFQKLAQGGFVQNDVSLMDQDHLGFSSVLTKVEEEVSKPYQFTPLMADEVLIGQLESRISFGEENQKESPPGRIAADSTDLHSDYSPSEIKESDSVQFDRMIENLRTPDSEGEDGKMETKNIGRPPLDPSIGDFDINTLQIIKNEDLEELKELGSGTFGTVYHGKWRGSDVAIKRIKKICFTSRSSEQERLTIEFWREADILSKLHHPNVVAFYGVVHDGPGATLATVTEYMVDGSLRHVLLRKDRYLDRRKRLLIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNTLVSGGVRGTLPWMAPELLNGSSNKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVSNTLRPTVPSSCDPEWRTLMEQCWAPNPAVRPSFTEITGRLRVMSAAAQTKTPGHKASK* 1046
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 22924598 22935504 - Vvi19g1143 Vvi19g1143 782642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1143 1045 MobiDBLite consensus disorder prediction 723 738 - -
Vvi19g1143 1045 PANTHER PROTEIN KINASE, PUTATIVE-RELATED 553 1045 - -
Vvi19g1143 1045 PANTHER PROTEIN KINASE, PUTATIVE-RELATED 394 503 - -
Vvi19g1143 1045 Pfam PB1 domain 179 263 IPR000270 GO:0005515
Vvi19g1143 1045 MobiDBLite consensus disorder prediction 678 710 - -
Vvi19g1143 1045 ProSitePatterns Protein kinases ATP-binding region signature. 770 795 IPR017441 GO:0005524
Vvi19g1143 1045 PANTHER PROTEIN KINASE, PUTATIVE-RELATED 77 307 - -
Vvi19g1143 1045 PRINTS Tyrosine kinase catalytic domain signature 883 901 IPR001245 GO:0004672|GO:0006468
Vvi19g1143 1045 PRINTS Tyrosine kinase catalytic domain signature 954 976 IPR001245 GO:0004672|GO:0006468
Vvi19g1143 1045 PRINTS Tyrosine kinase catalytic domain signature 846 859 IPR001245 GO:0004672|GO:0006468
Vvi19g1143 1045 PRINTS Tyrosine kinase catalytic domain signature 998 1020 IPR001245 GO:0004672|GO:0006468
Vvi19g1143 1045 CDD STKc_MAP3K-like 770 1027 - -
Vvi19g1143 1045 MobiDBLite consensus disorder prediction 472 499 - -
Vvi19g1143 1045 SUPERFAMILY Protein kinase-like (PK-like) 755 1025 IPR011009 -
Vvi19g1143 1045 MobiDBLite consensus disorder prediction 484 499 - -
Vvi19g1143 1045 PANTHER SERINE-THREONINE PROTEIN KINASE 77 307 - -
Vvi19g1143 1045 PANTHER SERINE-THREONINE PROTEIN KINASE 553 1045 - -
Vvi19g1143 1045 Gene3D Phosphorylase Kinase; domain 1 751 850 - -
Vvi19g1143 1045 SMART serkin_6 764 1030 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g1143 1045 Pfam Protein tyrosine and serine/threonine kinase 765 1026 IPR001245 GO:0004672|GO:0006468
Vvi19g1143 1045 ProSiteProfiles Protein kinase domain profile. 764 1029 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g1143 1045 Gene3D Transferase(Phosphotransferase) domain 1 851 1044 - -
Vvi19g1143 1045 PANTHER SERINE-THREONINE PROTEIN KINASE 394 503 - -
Vvi19g1143 1045 Gene3D - 181 264 - -
Vvi19g1143 1045 ProSitePatterns Serine/Threonine protein kinases active-site signature. 889 901 IPR008271 GO:0004672|GO:0006468
Vvi19g1143 1045 SUPERFAMILY CAD & PB1 domains 178 267 - -
Vvi19g1143 1045 MobiDBLite consensus disorder prediction 723 746 - -
Vvi19g1143 1045 SMART PB1_new 177 264 IPR000270 GO:0005515
Vvi19g1143 1045 CDD PB1_UP2 166 262 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76411 PF07714 PK_Tyr_Ser-Thr 5.20E-62 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1143 - - vvi:100257013 1342.79