Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1143 ATGGAACCTGGAAATGGGAAATTTTACCCTGAATCTCAGGGCTTTATGCTGGACCCAACAACTGCCATAAATACTGATACAAGACCTCCAGAGTTTAACAATTTGGAAGTTAAACCTGTGCGTAATTACTCCATACAGACAGGTGAGGAGTTTGCCCTGGAATTTATGCTTGATCGGGTGAATCCAAGGAATCAATTCATTCCAGATACTGCTGGTGATCCCCACTATGTACCAAAGTATACAGAATTGAAAGGGATTTTAGGCATCAATCATACAGGGTCTGAAAGTGGGTCAGATATCTCAATGCTTACAATTGTAGAAAGAGGCCCAAAAGAGTTTGAGAGAAAGAACTCTGCTTTATATGAAGACAGAAGTTACTATGGTTCTGTGCAATTGGTGCCACGGACTTCATCAGGGCATGATAGCAGTCGAGGAGTAATTCATGGGTATGCCTCTTCTGGAGCATCTGATAGCTCATCTACAAAGATGAAAGTTCTATGCAGCTTTGGTGGTAAAATCCTTCCCCGGCCTAGTGATGGAAAACTCAGATATGTTGGAGGTGAAACACGTATTATTCGTATAAGAAAGGACATTTCTTGGCAGGAGCTTGTGCAGAAAACGTTAATGGTCTTTAACCAAGCTCATATTATTAAGTATCAGCTTCCTGGGGAGGACCTTGATGCCTTAGTTTCTGTTTCTTGTGACGAGGATTTGCAGAACATGATGGAGGAATGTAATGAACTAGAAGATGGAGAAGGATCAAAGAAACTGAGGATGTTTCTGTTTTCTACAAGTGACTTGGATGATGCTTATTTTGGTCTGGACAGCACAGATGGTGATTCAGAGATTCAGTATGTTGTTGCTGTCAATGGCATGGACATGGGATCGAGAAAAAACTCAACTCTGCATGGTTTGGTAGGCTCTTCCTCAAATAATTTGGCTGATTTAGATGGGCAAAATATTGAGAGGAATGCCACTAGAGTTGCAACGGACTCTGTTGGCATCAGCACTCTGCCTTTGACAGGCACTATCGTCCCACCATCCACAATTCAATCTTCTCAACCAATTCTACCAAATTCTTCCATCTCCATTTCTTCACTGGATCAATTTCCTTCAGAAAATAAGGGAAAGCACCACAAACCTGTGGAGATCTCTTCTTCTGTTGATGCTATGAATCAGGCACAGGTTCCTAAATCTGATTATGATCATCATCCCGCATCAAGTAGTCCATTTGCTCCTGTATATGCTGACCCTGGGTCTGGTCTAATGGATTTGAGCTACCTGGAGCCACCTGTGCTTCCTCAGAGGGTCTATTATTCTGAAAGAGTTCCCCGGGAGCAGGCAGAGCTGCTCAATCGGTTATCAAAGTCTGACGATTCACTTGGTTCTCAGTTTCTTATATCCCACTCACGTTCTGATATTGAAAAGCAGGATTCAGTCGCCGAATCCACTGACAAACTGCGGAATGGAAATCTGGCTCCTCAAACTGAACAGTCCATCTCAACTGGAGAAGCTATGGTTGAGGATATGGCTGTTAAGGCTGACCATGGAACAACCGGCACCAAAGATATCCCTAGGAAACTCCTGCTTCATGGAACAACTGAACCTGGATCAGAACTGCCTGCAATGAATCAAGTTGCTTCTGTTAAGCACTGGAGCTCTGTTGGTGTTTCCACGCCTGAGCAGGGAGATATCCTTATTGATATCAATGACCGGTTCCCTCGTGATTTCCTTTCCGATATATTCTCCAAAGCTGTACATTTTGCAGATTCCCCTGACATTAGCAAACCACAAAAAGATGGAGCTGGCTTGAGCTTAAACATGGAAAATCGTGAACCTAAGCATTGGTCATACTTTCAGAAGCTAGCACAGGGTGGATTTGTTCAAAATGATGTTTCTCTTATGGATCAAGATCATCTTGGATTTTCATCGGTCCTTACAAAGGTCGAAGAAGAAGTGTCTAAACCTTATCAATTTACGCCTTTAATGGCAGATGAAGTTTTGATAGGCCAGTTGGAGTCACGAATAAGTTTTGGTGAAGAAAATCAGAAAGAATCACCACCTGGTAGGATTGCTGCTGACAGTACTGATTTGCATTCAGATTACAGTCCTTCTGAAATAAAGGAGAGTGACAGTGTACAATTTGATCGTATGATCGAGAACCTTAGAACACCAGATTCAGAGGGCGAGGATGGGAAAATGGAAACCAAGAATATTGGTCGACCTCCTCTAGATCCTTCTATTGGAGATTTTGATATCAATACTTTGCAGATCATAAAGAATGAAGATCTTGAAGAGCTGAAGGAACTGGGTTCTGGTACTTTTGGGACCGTCTATCATGGAAAATGGAGGGGATCAGATGTTGCCATTAAGCGAATAAAGAAGATCTGCTTCACAAGTCGTTCATCGGAGCAAGAAAGATTGACCATAGAATTCTGGCGAGAAGCTGATATTCTCTCAAAGCTTCACCATCCAAATGTGGTGGCATTTTACGGTGTAGTGCACGATGGACCGGGAGCAACGTTAGCCACTGTCACTGAGTACATGGTTGATGGTTCTCTTAGGCATGTTCTACTTCGCAAAGATAGGTATCTTGATCGCCGCAAGCGGCTCTTAATTGCTATGGATGCTGCATTTGGAATGGAATATTTGCACTCAAAGAATATTGTGCATTTTGATTTGAAATGTGACAACTTGCTTGTGAACTTGAAAGATCCCCTACGACCCATTTGCAAGGTTGGTGACTTTGGCCTGTCAAAAATAAAGCGAAATACTTTGGTTTCTGGTGGCGTAAGGGGGACCTTACCATGGATGGCACCAGAGCTGCTTAATGGTAGCAGCAATAAAGTTTCTGAAAAGGTTGATGTGTTCTCCTTTGGTATCGTGTTATGGGAGATTCTCACTGGCGAGGAACCATATGCCAACATGCACTATGGTGCAATCATAGGAGGCATTGTGAGCAACACATTGAGGCCAACCGTTCCAAGCTCCTGTGATCCCGAATGGAGAACCCTAATGGAGCAGTGCTGGGCTCCTAACCCTGCAGTCCGGCCATCTTTCACGGAAATCACCGGTCGCTTAAGGGTGATGTCTGCAGCAGCCCAAACTAAAACACCAGGTCATAAGGCTTCTAAATAA 3138 43.37 MEPGNGKFYPESQGFMLDPTTAINTDTRPPEFNNLEVKPVRNYSIQTGEEFALEFMLDRVNPRNQFIPDTAGDPHYVPKYTELKGILGINHTGSESGSDISMLTIVERGPKEFERKNSALYEDRSYYGSVQLVPRTSSGHDSSRGVIHGYASSGASDSSSTKMKVLCSFGGKILPRPSDGKLRYVGGETRIIRIRKDISWQELVQKTLMVFNQAHIIKYQLPGEDLDALVSVSCDEDLQNMMEECNELEDGEGSKKLRMFLFSTSDLDDAYFGLDSTDGDSEIQYVVAVNGMDMGSRKNSTLHGLVGSSSNNLADLDGQNIERNATRVATDSVGISTLPLTGTIVPPSTIQSSQPILPNSSISISSLDQFPSENKGKHHKPVEISSSVDAMNQAQVPKSDYDHHPASSSPFAPVYADPGSGLMDLSYLEPPVLPQRVYYSERVPREQAELLNRLSKSDDSLGSQFLISHSRSDIEKQDSVAESTDKLRNGNLAPQTEQSISTGEAMVEDMAVKADHGTTGTKDIPRKLLLHGTTEPGSELPAMNQVASVKHWSSVGVSTPEQGDILIDINDRFPRDFLSDIFSKAVHFADSPDISKPQKDGAGLSLNMENREPKHWSYFQKLAQGGFVQNDVSLMDQDHLGFSSVLTKVEEEVSKPYQFTPLMADEVLIGQLESRISFGEENQKESPPGRIAADSTDLHSDYSPSEIKESDSVQFDRMIENLRTPDSEGEDGKMETKNIGRPPLDPSIGDFDINTLQIIKNEDLEELKELGSGTFGTVYHGKWRGSDVAIKRIKKICFTSRSSEQERLTIEFWREADILSKLHHPNVVAFYGVVHDGPGATLATVTEYMVDGSLRHVLLRKDRYLDRRKRLLIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNTLVSGGVRGTLPWMAPELLNGSSNKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVSNTLRPTVPSSCDPEWRTLMEQCWAPNPAVRPSFTEITGRLRVMSAAAQTKTPGHKASK* 1046
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 22924598 22935504 - Vvi19g1143 Vvi19g1143 782642

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1143 1045 MobiDBLite consensus disorder prediction 723 738 - -
Vvi19g1143 1045 PANTHER PROTEIN KINASE, PUTATIVE-RELATED 553 1045 - -
Vvi19g1143 1045 PANTHER PROTEIN KINASE, PUTATIVE-RELATED 394 503 - -
Vvi19g1143 1045 Pfam PB1 domain 179 263 IPR000270 GO:0005515
Vvi19g1143 1045 MobiDBLite consensus disorder prediction 678 710 - -
Vvi19g1143 1045 ProSitePatterns Protein kinases ATP-binding region signature. 770 795 IPR017441 GO:0005524
Vvi19g1143 1045 PANTHER PROTEIN KINASE, PUTATIVE-RELATED 77 307 - -
Vvi19g1143 1045 PRINTS Tyrosine kinase catalytic domain signature 883 901 IPR001245 GO:0004672|GO:0006468
Vvi19g1143 1045 PRINTS Tyrosine kinase catalytic domain signature 954 976 IPR001245 GO:0004672|GO:0006468
Vvi19g1143 1045 PRINTS Tyrosine kinase catalytic domain signature 846 859 IPR001245 GO:0004672|GO:0006468
Vvi19g1143 1045 PRINTS Tyrosine kinase catalytic domain signature 998 1020 IPR001245 GO:0004672|GO:0006468
Vvi19g1143 1045 CDD STKc_MAP3K-like 770 1027 - -
Vvi19g1143 1045 MobiDBLite consensus disorder prediction 472 499 - -
Vvi19g1143 1045 SUPERFAMILY Protein kinase-like (PK-like) 755 1025 IPR011009 -
Vvi19g1143 1045 MobiDBLite consensus disorder prediction 484 499 - -
Vvi19g1143 1045 PANTHER SERINE-THREONINE PROTEIN KINASE 77 307 - -
Vvi19g1143 1045 PANTHER SERINE-THREONINE PROTEIN KINASE 553 1045 - -
Vvi19g1143 1045 Gene3D Phosphorylase Kinase; domain 1 751 850 - -
Vvi19g1143 1045 SMART serkin_6 764 1030 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g1143 1045 Pfam Protein tyrosine and serine/threonine kinase 765 1026 IPR001245 GO:0004672|GO:0006468
Vvi19g1143 1045 ProSiteProfiles Protein kinase domain profile. 764 1029 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g1143 1045 Gene3D Transferase(Phosphotransferase) domain 1 851 1044 - -
Vvi19g1143 1045 PANTHER SERINE-THREONINE PROTEIN KINASE 394 503 - -
Vvi19g1143 1045 Gene3D - 181 264 - -
Vvi19g1143 1045 ProSitePatterns Serine/Threonine protein kinases active-site signature. 889 901 IPR008271 GO:0004672|GO:0006468
Vvi19g1143 1045 SUPERFAMILY CAD & PB1 domains 178 267 - -
Vvi19g1143 1045 MobiDBLite consensus disorder prediction 723 746 - -
Vvi19g1143 1045 SMART PB1_new 177 264 IPR000270 GO:0005515
Vvi19g1143 1045 CDD PB1_UP2 166 262 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1143 - - - vvi:100257013 1342.79
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1143 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi10g00944 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005490 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76411 PF07714 PK_Tyr_Ser-Thr 5.20E-62 CL0016 Vvi PK