Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1144 ATGCTTTCCAAGCTGCCCACCAGCCTTCCACCCCACCTGGCTCTCAAATTCATTAAAGTCTATTCCAATTCTGGCGATCTTCAACGTGCACGCCACTTGTTCGATAAAATTCCCCAACCAGACCTCCCTACATGGACCATTCTGATTTCAGCTCTCACTAAACATGGTCGCTCATTGGAAGCTATACAATATTATAATGATTTTAGGCACAAGAACTGCGTTGAACCCGATAAATTGTTACTGTTATCTGTGGCCAAGGCTTGTGCCAGCTTGAGGGATGTTATGAATGCCAAAAGGGTCCATGAGGATGCAATCCGATTCGGGTTTTGTTCGGATGTTTTGTTGGGTAATGCATTGATTGATATGTATGGGAAGTGCAGATGTTCTGAAGGTGCTAGGCTGGTTTTTGAAGGTATGCCTTTCAGGGATGTGATTAGCTGGACCTCGATGGCTTCTTGTTATGTGAATTGTGGACTTCTGAGAGAGGCTTTGGGAGCTTTTCGCAAAATGGGGTTGAATGGGGAAAGACCCAATTCGGTTACGGTGTCCTCAATTCTTCCTGCTTGTACGGATTTGAAAGATTTGAAATCAGGAAGAGAGGTTCATGGTTTTGTTGTGAGAAATGGAATGGGAGGAAATGTGTTTGTGAGTAGTGCTCTTGTAAACATGTATGCTAGTTGTTTAAGCATTAGGCAAGCTCAGTTGGTGTTTGATAGCATGTCTCGAAGAGACACTGTTTCATGGAATGTACTTATAACGGCATATTTCTTGAACAAAGAATGTGAGAAGGGTCTTAGTGTTTTTGGTAGGATGATGAGTGAAGGGGTTGGATTGAATTATGCTTCGTGGAATGCTGTAATTGGGGGATGCATGCAAAATGGACGAACTGAAAAAGCACTAGAGGTCCTCAGTCGAATGCAAAATTCAGGATTCAAACCTAACCAAATCACAATCACTAGTGTCTTGCCTGCTTGCACAAATTTAGAGAGCTTAAGGGGAGGCAAACAGATTCATGGATATATCTTTAGGCATTGGTTTTTTCAGGACTTAACAACTACCACTGCTTTGGTTTTCATGTATGCTAAATGTGGTGACTTGGAACTTTCTCGTAGGGTTTTCAGTATGATGACGAAAAGGGATACTGTTTCTTGGAACACGATGATCATTGCCACCTCGATGCATGGGAATGGAGAGGAAGCTTTGTTGCTCTTCCGAGAAATGGTGGATTCTGGGGTCAGGCCTAATTCTGTTACTTTTACTGGTGTTTTATCTGGCTGCAGTCATTCACGTCTTGTTGATGAAGGTCTCTTGATTTTTGATTCGATGAGCAGAGATCACTCAGTTGAACCTGATGCAGATCATCACTCGTGTATGGTAGATGTACTAAGCCGAGCTGGTCGCCTAGAAGAGGCATATGAGTTCATAAAAAAAATGCCTATTGAACCAACTGCTGGTGCTTGGGGAGCACTGCTCGGTGGCTGTAGAGTATATAAGAATGTAGAGTTGGGGCGAATTGCAGCAAACCGGTTGTTTGAGATTGAATCAGATAACCCTGGAAACTATGTACTTTTATCCAACATACTTGTTTCTGCCAAACTATGGAGTGAAGCATCAGAAACTAGAAAATTGATGAGAGACAGAGGAGTTACTAAAAATCCAGGTTGTAGTTGGATTCAGGTGAGAAACAGAGTCCATACTTTTGTTGTTGGTGATAAAAGTAATGATCAGAGTGATGAGATCTACAGATTTTTGGATTATATGGGGGAGAAGATGAGAATTGCAGGGTATTTGCCCAACACTGATTTTGTGCTGCAAGATGTTGATCAAGAAGAGAAAGAGGAGGTTTTATGCAACCATAGTGAGAAACTTGCTGTTGCTTTTGGTGTACTTAATCTGAATGGGGAGTCATCAATTCGGGTATTTAAGAATCTGAGAATATGTGGAGATTGCCATAATGCGATCAAGTTCATGGCCAAGATTGTTGGGGTGAAGATCATTGTGAGAGATTCCCTGAGGTTTCATCATTTCAGGGATGGATTATGCTCCTGTCAGGATTTTTGGTGA 2064 42.05 MLSKLPTSLPPHLALKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEPDKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGCRVYKNVELGRIAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETRKLMRDRGVTKNPGCSWIQVRNRVHTFVVGDKSNDQSDEIYRFLDYMGEKMRIAGYLPNTDFVLQDVDQEEKEEVLCNHSEKLAVAFGVLNLNGESSIRVFKNLRICGDCHNAIKFMAKIVGVKIIVRDSLRFHHFRDGLCSCQDFW* 688
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 22939140 22943152 + Vvi19g1144 Vvi19g1144 782643

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1144 687 Pfam PPR repeat 456 478 IPR002885 -
Vvi19g1144 687 Pfam PPR repeat 117 140 IPR002885 -
Vvi19g1144 687 Pfam PPR repeat 352 379 IPR002885 -
Vvi19g1144 687 Pfam PPR repeat 246 276 IPR002885 -
Vvi19g1144 687 Pfam PPR repeat 145 174 IPR002885 -
Vvi19g1144 687 Pfam PPR repeat 44 73 IPR002885 -
Vvi19g1144 687 TIGRFAM PPR: pentatricopeptide repeat domain 382 415 IPR002885 -
Vvi19g1144 687 TIGRFAM PPR: pentatricopeptide repeat domain 145 178 IPR002885 -
Vvi19g1144 687 TIGRFAM PPR: pentatricopeptide repeat domain 246 277 IPR002885 -
Vvi19g1144 687 TIGRFAM PPR: pentatricopeptide repeat domain 282 314 IPR002885 -
Vvi19g1144 687 TIGRFAM PPR: pentatricopeptide repeat domain 44 77 IPR002885 -
Vvi19g1144 687 TIGRFAM PPR: pentatricopeptide repeat domain 417 452 IPR002885 -
Vvi19g1144 687 PANTHER OS07G0578800 PROTEIN-RELATED 5 676 IPR045215 GO:0003723|GO:0009451
Vvi19g1144 687 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 279 313 IPR002885 -
Vvi19g1144 687 Pfam E motif 497 559 IPR046848 -
Vvi19g1144 687 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 5 676 - -
Vvi19g1144 687 Pfam DYW family of nucleic acid deaminases 595 687 IPR032867 GO:0008270
Vvi19g1144 687 Gene3D Tetratricopeptide repeat domain 53 199 IPR011990 GO:0005515
Vvi19g1144 687 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 244 278 IPR002885 -
Vvi19g1144 687 Pfam PPR repeat family 380 427 IPR002885 -
Vvi19g1144 687 Pfam PPR repeat family 279 325 IPR002885 -
Vvi19g1144 687 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 143 177 IPR002885 -
Vvi19g1144 687 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Vvi19g1144 687 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 41 75 IPR002885 -
Vvi19g1144 687 Gene3D Tetratricopeptide repeat domain 336 430 IPR011990 GO:0005515
Vvi19g1144 687 Gene3D Tetratricopeptide repeat domain 431 558 IPR011990 GO:0005515
Vvi19g1144 687 Gene3D Tetratricopeptide repeat domain 200 335 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1144 - - - vvi:100853811 1393.64
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1144 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0023696 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 2