Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1144 ATGCTTTCCAAGCTGCCCACCAGCCTTCCACCCCACCTGGCTCTCAAATTCATTAAAGTCTATTCCAATTCTGGCGATCTTCAACGTGCACGCCACTTGTTCGATAAAATTCCCCAACCAGACCTCCCTACATGGACCATTCTGATTTCAGCTCTCACTAAACATGGTCGCTCATTGGAAGCTATACAATATTATAATGATTTTAGGCACAAGAACTGCGTTGAACCCGATAAATTGTTACTGTTATCTGTGGCCAAGGCTTGTGCCAGCTTGAGGGATGTTATGAATGCCAAAAGGGTCCATGAGGATGCAATCCGATTCGGGTTTTGTTCGGATGTTTTGTTGGGTAATGCATTGATTGATATGTATGGGAAGTGCAGATGTTCTGAAGGTGCTAGGCTGGTTTTTGAAGGTATGCCTTTCAGGGATGTGATTAGCTGGACCTCGATGGCTTCTTGTTATGTGAATTGTGGACTTCTGAGAGAGGCTTTGGGAGCTTTTCGCAAAATGGGGTTGAATGGGGAAAGACCCAATTCGGTTACGGTGTCCTCAATTCTTCCTGCTTGTACGGATTTGAAAGATTTGAAATCAGGAAGAGAGGTTCATGGTTTTGTTGTGAGAAATGGAATGGGAGGAAATGTGTTTGTGAGTAGTGCTCTTGTAAACATGTATGCTAGTTGTTTAAGCATTAGGCAAGCTCAGTTGGTGTTTGATAGCATGTCTCGAAGAGACACTGTTTCATGGAATGTACTTATAACGGCATATTTCTTGAACAAAGAATGTGAGAAGGGTCTTAGTGTTTTTGGTAGGATGATGAGTGAAGGGGTTGGATTGAATTATGCTTCGTGGAATGCTGTAATTGGGGGATGCATGCAAAATGGACGAACTGAAAAAGCACTAGAGGTCCTCAGTCGAATGCAAAATTCAGGATTCAAACCTAACCAAATCACAATCACTAGTGTCTTGCCTGCTTGCACAAATTTAGAGAGCTTAAGGGGAGGCAAACAGATTCATGGATATATCTTTAGGCATTGGTTTTTTCAGGACTTAACAACTACCACTGCTTTGGTTTTCATGTATGCTAAATGTGGTGACTTGGAACTTTCTCGTAGGGTTTTCAGTATGATGACGAAAAGGGATACTGTTTCTTGGAACACGATGATCATTGCCACCTCGATGCATGGGAATGGAGAGGAAGCTTTGTTGCTCTTCCGAGAAATGGTGGATTCTGGGGTCAGGCCTAATTCTGTTACTTTTACTGGTGTTTTATCTGGCTGCAGTCATTCACGTCTTGTTGATGAAGGTCTCTTGATTTTTGATTCGATGAGCAGAGATCACTCAGTTGAACCTGATGCAGATCATCACTCGTGTATGGTAGATGTACTAAGCCGAGCTGGTCGCCTAGAAGAGGCATATGAGTTCATAAAAAAAATGCCTATTGAACCAACTGCTGGTGCTTGGGGAGCACTGCTCGGTGGCTGTAGAGTATATAAGAATGTAGAGTTGGGGCGAATTGCAGCAAACCGGTTGTTTGAGATTGAATCAGATAACCCTGGAAACTATGTACTTTTATCCAACATACTTGTTTCTGCCAAACTATGGAGTGAAGCATCAGAAACTAGAAAATTGATGAGAGACAGAGGAGTTACTAAAAATCCAGGTTGTAGTTGGATTCAGGTGAGAAACAGAGTCCATACTTTTGTTGTTGGTGATAAAAGTAATGATCAGAGTGATGAGATCTACAGATTTTTGGATTATATGGGGGAGAAGATGAGAATTGCAGGGTATTTGCCCAACACTGATTTTGTGCTGCAAGATGTTGATCAAGAAGAGAAAGAGGAGGTTTTATGCAACCATAGTGAGAAACTTGCTGTTGCTTTTGGTGTACTTAATCTGAATGGGGAGTCATCAATTCGGGTATTTAAGAATCTGAGAATATGTGGAGATTGCCATAATGCGATCAAGTTCATGGCCAAGATTGTTGGGGTGAAGATCATTGTGAGAGATTCCCTGAGGTTTCATCATTTCAGGGATGGATTATGCTCCTGTCAGGATTTTTGGTGA 2064 42.05 MLSKLPTSLPPHLALKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEPDKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGCRVYKNVELGRIAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETRKLMRDRGVTKNPGCSWIQVRNRVHTFVVGDKSNDQSDEIYRFLDYMGEKMRIAGYLPNTDFVLQDVDQEEKEEVLCNHSEKLAVAFGVLNLNGESSIRVFKNLRICGDCHNAIKFMAKIVGVKIIVRDSLRFHHFRDGLCSCQDFW* 688
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 22939140 22943152 + Vvi19g1144 Vvi19g1144 782643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1144 687 Pfam PPR repeat 456 478 IPR002885 -
Vvi19g1144 687 Pfam PPR repeat 117 140 IPR002885 -
Vvi19g1144 687 Pfam PPR repeat 352 379 IPR002885 -
Vvi19g1144 687 Pfam PPR repeat 246 276 IPR002885 -
Vvi19g1144 687 Pfam PPR repeat 145 174 IPR002885 -
Vvi19g1144 687 Pfam PPR repeat 44 73 IPR002885 -
Vvi19g1144 687 TIGRFAM PPR: pentatricopeptide repeat domain 382 415 IPR002885 -
Vvi19g1144 687 TIGRFAM PPR: pentatricopeptide repeat domain 145 178 IPR002885 -
Vvi19g1144 687 TIGRFAM PPR: pentatricopeptide repeat domain 246 277 IPR002885 -
Vvi19g1144 687 TIGRFAM PPR: pentatricopeptide repeat domain 282 314 IPR002885 -
Vvi19g1144 687 TIGRFAM PPR: pentatricopeptide repeat domain 44 77 IPR002885 -
Vvi19g1144 687 TIGRFAM PPR: pentatricopeptide repeat domain 417 452 IPR002885 -
Vvi19g1144 687 PANTHER OS07G0578800 PROTEIN-RELATED 5 676 IPR045215 GO:0003723|GO:0009451
Vvi19g1144 687 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 279 313 IPR002885 -
Vvi19g1144 687 Pfam E motif 497 559 IPR046848 -
Vvi19g1144 687 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 5 676 - -
Vvi19g1144 687 Pfam DYW family of nucleic acid deaminases 595 687 IPR032867 GO:0008270
Vvi19g1144 687 Gene3D Tetratricopeptide repeat domain 53 199 IPR011990 GO:0005515
Vvi19g1144 687 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 244 278 IPR002885 -
Vvi19g1144 687 Pfam PPR repeat family 380 427 IPR002885 -
Vvi19g1144 687 Pfam PPR repeat family 279 325 IPR002885 -
Vvi19g1144 687 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 143 177 IPR002885 -
Vvi19g1144 687 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Vvi19g1144 687 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 41 75 IPR002885 -
Vvi19g1144 687 Gene3D Tetratricopeptide repeat domain 336 430 IPR011990 GO:0005515
Vvi19g1144 687 Gene3D Tetratricopeptide repeat domain 431 558 IPR011990 GO:0005515
Vvi19g1144 687 Gene3D Tetratricopeptide repeat domain 200 335 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1144 - - vvi:100853811 1393.64