Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1147 ATGGCGCTCTATTCTCTCTTCAGATCCGCGCCTTCCGCCGCCGCCGCCGCCGCCGCTACTGTGGTGGATTCTTCTCGTCCTTCTGATCGATGCAAGGTGTCTTGCATTGGTTTCAATAGCAATGCGGACTCACTGAAGGTTCAGACCACCATATTTGGTACTCCTTGTATTGGAAATTCATCTTCCTTACAGAAATGCAGTGCCAGGAGTCTCCAGCCCATCAAAGCCACAGCCACAGAATTGCCTCCTACAGTTCAAAAGTCATGGAGCAGTGGGCAGACAAAGATTGGAATCAATGGTTTTGGTCGAATTGGAAGGTTGGTTTTACGAGTAGCAACCTCTAGGGATGATATTGATGTGGTAGCAGTCAATGATCCATTTGTTGATGCCAAATACATGGCTTACATGTTCAAGTATGATTCTACTCATGGAGTTTTCAAGGGAACCATCAAGGTATTGGATGAGTCCACTTTGGAAATCAATGGCAAGCAGATAAAAGTTACAAGCAAAAGGGACCCATCAGAAATCCCTTGGGGTGATTATGGGATTGATTATGTTGTTGAATCTTCTGGAGTTTTCACAACAACCGAGAAGGCTTCTGCACACATAAAGGGTGGTGCCAAGAAAGTGGTAATTTCAGCTCCATCAGCTGATGCACCGATGTTTGTGGTAGGAGTAAATGAGACTTCATACAAGCCAAGCATGAATATTGTTTCTAATGCAAGCTGTACCACCAATTGCCTTGCTCCTCTTGCCAAGGTTGTTCATGAGGAATTTGGTATCGTTGAGGGTTTAATGACAACTGTGCATGCCACTACAGCCACACAGAAGACCGTGGATGGGCCTTCAATGAAGGATTGGCGAGGGGGCCGAGGTGCTTCACAAAATATCATCCCAAGCTCCACTGGTGCTGCAAAGGCTGTTGGAAAAGTCCTTCCAGAACTCAACGGAAAGCTCACTGGAATGGCCTTCCGCGTCCCAACACCTAATGTCTCTGTTGTGGACTTAACTTGTCGACTTAAGAAGAGTGCTACATATGAAGATGTCAAAGCAGCCGTAAAGTATGCCTCAGAGGGGCCATTGAAGGGTATTCTTGGATACACGGATGAGGATGTTGTCTCCAATGATTTTGTTGGTGACTCAAGGTCAAGTATATTTGATGCAAAGGCCGGGATAGGGCTGAGTGCTTCCTTCATGAAGCTCGTTGCATGGTATGACAACGAATGGGGATACAGCAACCGAGTGCTGGACCTCATAGAGCACATGGCATTGGTGGCGGCCAGCAAATGA 1290 46.74 MALYSLFRSAPSAAAAAAATVVDSSRPSDRCKVSCIGFNSNADSLKVQTTIFGTPCIGNSSSLQKCSARSLQPIKATATELPPTVQKSWSSGQTKIGINGFGRIGRLVLRVATSRDDIDVVAVNDPFVDAKYMAYMFKYDSTHGVFKGTIKVLDESTLEINGKQIKVTSKRDPSEIPWGDYGIDYVVESSGVFTTTEKASAHIKGGAKKVVISAPSADAPMFVVGVNETSYKPSMNIVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLKKSATYEDVKAAVKYASEGPLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVAWYDNEWGYSNRVLDLIEHMALVAASK* 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 23001164 23010177 + Vvi19g1147 Vvi19g1147 782646

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1147 429 SMART gp_dh_n_7 94 243 IPR020828 GO:0051287
Vvi19g1147 429 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 242 405 - -
Vvi19g1147 429 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 95 195 IPR020828 GO:0051287
Vvi19g1147 429 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 241 248 IPR020830 GO:0016620
Vvi19g1147 429 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 94 259 IPR036291 -
Vvi19g1147 429 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 1 429 IPR020831 GO:0016620
Vvi19g1147 429 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 95 417 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Vvi19g1147 429 Gene3D - 95 422 - -
Vvi19g1147 429 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 202 215 IPR020831 GO:0016620
Vvi19g1147 429 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 237 255 IPR020831 GO:0016620
Vvi19g1147 429 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 264 280 IPR020831 GO:0016620
Vvi19g1147 429 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 321 338 IPR020831 GO:0016620
Vvi19g1147 429 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 361 376 IPR020831 GO:0016620
Vvi19g1147 429 Gene3D Dihydrodipicolinate Reductase; domain 2 243 409 - -
Vvi19g1147 429 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 248 405 IPR020829 GO:0016620
Vvi19g1147 429 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPCP1, CHLOROPLASTIC 1 429 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1147 K00134 GAPDH, gapA; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] - vvi:100265689 831.247
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1147 Blo04g00463 Blo13g00601 . . . . . . . . . . . . Sed05g1836 Cpe04g00865 Cpe16g00709 Bhi05g01995 Tan02g0029 . Lac12g0041 Hepe02g0014 . . . . . . . . . . . . . . Csa07g01207 . Cme11g01634 . . . . Bpe15g00918 . . . Sed05g3308 . . . . . . Cpe15g00903 Cpe05g01033 Bhi10g00938 Tan05g0584 Cmetu11g0258 . Hepe08g0647 . . . . . . . . . . Csa06g01151 Chy11g01041 Cme01g01504
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002415 1 2 2 0 2 2 3 1 2 2 1 1 3 2 2 3 2 1 4 1 2 1 2 2 2 1 2 4 7 1 61