Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1147 ATGGCGCTCTATTCTCTCTTCAGATCCGCGCCTTCCGCCGCCGCCGCCGCCGCCGCTACTGTGGTGGATTCTTCTCGTCCTTCTGATCGATGCAAGGTGTCTTGCATTGGTTTCAATAGCAATGCGGACTCACTGAAGGTTCAGACCACCATATTTGGTACTCCTTGTATTGGAAATTCATCTTCCTTACAGAAATGCAGTGCCAGGAGTCTCCAGCCCATCAAAGCCACAGCCACAGAATTGCCTCCTACAGTTCAAAAGTCATGGAGCAGTGGGCAGACAAAGATTGGAATCAATGGTTTTGGTCGAATTGGAAGGTTGGTTTTACGAGTAGCAACCTCTAGGGATGATATTGATGTGGTAGCAGTCAATGATCCATTTGTTGATGCCAAATACATGGCTTACATGTTCAAGTATGATTCTACTCATGGAGTTTTCAAGGGAACCATCAAGGTATTGGATGAGTCCACTTTGGAAATCAATGGCAAGCAGATAAAAGTTACAAGCAAAAGGGACCCATCAGAAATCCCTTGGGGTGATTATGGGATTGATTATGTTGTTGAATCTTCTGGAGTTTTCACAACAACCGAGAAGGCTTCTGCACACATAAAGGGTGGTGCCAAGAAAGTGGTAATTTCAGCTCCATCAGCTGATGCACCGATGTTTGTGGTAGGAGTAAATGAGACTTCATACAAGCCAAGCATGAATATTGTTTCTAATGCAAGCTGTACCACCAATTGCCTTGCTCCTCTTGCCAAGGTTGTTCATGAGGAATTTGGTATCGTTGAGGGTTTAATGACAACTGTGCATGCCACTACAGCCACACAGAAGACCGTGGATGGGCCTTCAATGAAGGATTGGCGAGGGGGCCGAGGTGCTTCACAAAATATCATCCCAAGCTCCACTGGTGCTGCAAAGGCTGTTGGAAAAGTCCTTCCAGAACTCAACGGAAAGCTCACTGGAATGGCCTTCCGCGTCCCAACACCTAATGTCTCTGTTGTGGACTTAACTTGTCGACTTAAGAAGAGTGCTACATATGAAGATGTCAAAGCAGCCGTAAAGTATGCCTCAGAGGGGCCATTGAAGGGTATTCTTGGATACACGGATGAGGATGTTGTCTCCAATGATTTTGTTGGTGACTCAAGGTCAAGTATATTTGATGCAAAGGCCGGGATAGGGCTGAGTGCTTCCTTCATGAAGCTCGTTGCATGGTATGACAACGAATGGGGATACAGCAACCGAGTGCTGGACCTCATAGAGCACATGGCATTGGTGGCGGCCAGCAAATGA 1290 46.74 MALYSLFRSAPSAAAAAAATVVDSSRPSDRCKVSCIGFNSNADSLKVQTTIFGTPCIGNSSSLQKCSARSLQPIKATATELPPTVQKSWSSGQTKIGINGFGRIGRLVLRVATSRDDIDVVAVNDPFVDAKYMAYMFKYDSTHGVFKGTIKVLDESTLEINGKQIKVTSKRDPSEIPWGDYGIDYVVESSGVFTTTEKASAHIKGGAKKVVISAPSADAPMFVVGVNETSYKPSMNIVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLKKSATYEDVKAAVKYASEGPLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVAWYDNEWGYSNRVLDLIEHMALVAASK* 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 23001164 23010177 + Vvi19g1147 Vvi19g1147 782646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1147 429 SMART gp_dh_n_7 94 243 IPR020828 GO:0051287
Vvi19g1147 429 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 242 405 - -
Vvi19g1147 429 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 95 195 IPR020828 GO:0051287
Vvi19g1147 429 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 241 248 IPR020830 GO:0016620
Vvi19g1147 429 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 94 259 IPR036291 -
Vvi19g1147 429 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 1 429 IPR020831 GO:0016620
Vvi19g1147 429 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 95 417 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Vvi19g1147 429 Gene3D - 95 422 - -
Vvi19g1147 429 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 202 215 IPR020831 GO:0016620
Vvi19g1147 429 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 237 255 IPR020831 GO:0016620
Vvi19g1147 429 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 264 280 IPR020831 GO:0016620
Vvi19g1147 429 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 321 338 IPR020831 GO:0016620
Vvi19g1147 429 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 361 376 IPR020831 GO:0016620
Vvi19g1147 429 Gene3D Dihydrodipicolinate Reductase; domain 2 243 409 - -
Vvi19g1147 429 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 248 405 IPR020829 GO:0016620
Vvi19g1147 429 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPCP1, CHLOROPLASTIC 1 429 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1147 K00134 - vvi:100265689 831.247