Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1148 ATGGCCTCTCAAGAGACGGAGGCGAGGCTGTGCGAGTCGCAGAGCCACTGGTTCAGGGGCGTGTGCGTGAGCAACCACAACTGCGCCGTCGTGTGCCGGAACGAGCACTTCGTCGGGGGCCGCTGCCGAGGCTTTCGCCGGAGGTGCTTCTGTACTCGCAACTGTTAA 168 63.69 MASQETEARLCESQSHWFRGVCVSNHNCAVVCRNEHFVGGRCRGFRRRCFCTRNC* 56
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 23010942 23012091 + Vvi19g1148 Vvi19g1148 782647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1148 55 ProSitePatterns Gamma-thionins family signature. 9 32 IPR008176 GO:0006952
Vvi19g1148 55 PRINTS Purothionin signature 10 25 IPR008176 GO:0006952
Vvi19g1148 55 PRINTS Purothionin signature 40 54 IPR008176 GO:0006952
Vvi19g1148 55 SMART gth_4 10 55 IPR003614 GO:0006952
Vvi19g1148 55 SUPERFAMILY Scorpion toxin-like 9 55 IPR036574 -
Vvi19g1148 55 PANTHER DEFENSIN-LIKE PROTEIN 1 6 55 - -
Vvi19g1148 55 Pfam Gamma-thionin family 9 55 - -
Vvi19g1148 55 PANTHER DEFENSIN SD2 6 55 - -
Vvi19g1148 55 Gene3D - 9 55 IPR036574 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1148 - - vri:117909252 83.1889