Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1150 ATGGAAGCGGGGATTACCAATATTTTTATCCTTCACTGGGACACAACACGAGGGCATTTTGAATTTCTCACACAACCCATCAACCATCTCTCATATATTCGGTTTCCTTCTCCAAATTCACAAAAAATGCACAAATTGGGTAGAGGTCACCGGGACAAAGTCCAGCAATTCATGGCAATAACTGGGGCAAGTGAAAAAGTTGCTCTTCATGCTTTGAAGGCCAGTGATTGGCATCTTGAAGGAGCATTTGATGTATTTTACAGTCAGCCCCAGATTAAAGCATTTACTGATTCTAGACATTTGGAGGAGCTTTACAGTAGATATAAAGATCCATATGTTGATATGATAATGGCTGATGGCATCTCCGTCCTTTGCAATGACCTTCAGGTGGATCCTCAAGATATTGTTATGTTAGTTGTCTCATGGCACATGAAGGCTGCCACAATGTGCGAATTTTCAAAACAGGAGTTCATTAGTGGATTGCAAGCATTGGGGATAGATTCACTGGAGAAATTTCGTGAGAGGATACAATTCATGCGTACTGAGCTGAAAGATGAACAAAAGTTCCGTGAGATATACAACTTTGCTTTTGGCTGGGCTAAAGAAAAGGGTCAGAAATCTTTGGCATTGGATACTGCAATTGGTATGTGGCAGTTACTATTTGCTGAAAAGCAATGGGCGTTGGTTGATCACTGGTGCCAGTTCCTACAGGCTCGACATAATAAAGCAATCTCTAGGGACACCTGGTCTCAATTATTGGAGTTTGCAAAGACTGTGGATCCTTCACTGTCTAATTATGATGCTGAAGGAGCTTGGCCGTATCTCATTGATGAGTTTGTGGAGTACTTGAATGAGAACAACATCATCCAAAAGGGCCAGCCGATTGACTGGAGCCTAAAACGAATAAAGAGACCAACAAAGGAAAAATAA 930 41.51 MEAGITNIFILHWDTTRGHFEFLTQPINHLSYIRFPSPNSQKMHKLGRGHRDKVQQFMAITGASEKVALHALKASDWHLEGAFDVFYSQPQIKAFTDSRHLEELYSRYKDPYVDMIMADGISVLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFISGLQALGIDSLEKFRERIQFMRTELKDEQKFREIYNFAFGWAKEKGQKSLALDTAIGMWQLLFAEKQWALVDHWCQFLQARHNKAISRDTWSQLLEFAKTVDPSLSNYDAEGAWPYLIDEFVEYLNENNIIQKGQPIDWSLKRIKRPTKEK* 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 23045180 23055363 - Vvi19g1150 Vvi19g1150 782649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1150 309 ProSiteProfiles DCUN1 domain profile. 96 284 IPR005176 -
Vvi19g1150 309 PANTHER DEFECTIVE IN CULLIN NEDDYLATION PROTEIN 55 291 - -
Vvi19g1150 309 Pfam UBA-like domain 51 89 - -
Vvi19g1150 309 Gene3D - 95 184 - -
Vvi19g1150 309 Gene3D Cullin, PONY binding domain 185 293 IPR042460 -
Vvi19g1150 309 PANTHER RP42 RELATED 55 291 IPR014764 -
Vvi19g1150 309 Gene3D - 48 89 - -
Vvi19g1150 309 CDD UBA_DCNL 50 90 - -
Vvi19g1150 309 SUPERFAMILY UBA-like 49 88 IPR009060 GO:0005515
Vvi19g1150 309 Pfam Cullin binding 172 282 IPR005176 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1150 K17822 - vvi:100245090 534.643