Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1150 ATGGAAGCGGGGATTACCAATATTTTTATCCTTCACTGGGACACAACACGAGGGCATTTTGAATTTCTCACACAACCCATCAACCATCTCTCATATATTCGGTTTCCTTCTCCAAATTCACAAAAAATGCACAAATTGGGTAGAGGTCACCGGGACAAAGTCCAGCAATTCATGGCAATAACTGGGGCAAGTGAAAAAGTTGCTCTTCATGCTTTGAAGGCCAGTGATTGGCATCTTGAAGGAGCATTTGATGTATTTTACAGTCAGCCCCAGATTAAAGCATTTACTGATTCTAGACATTTGGAGGAGCTTTACAGTAGATATAAAGATCCATATGTTGATATGATAATGGCTGATGGCATCTCCGTCCTTTGCAATGACCTTCAGGTGGATCCTCAAGATATTGTTATGTTAGTTGTCTCATGGCACATGAAGGCTGCCACAATGTGCGAATTTTCAAAACAGGAGTTCATTAGTGGATTGCAAGCATTGGGGATAGATTCACTGGAGAAATTTCGTGAGAGGATACAATTCATGCGTACTGAGCTGAAAGATGAACAAAAGTTCCGTGAGATATACAACTTTGCTTTTGGCTGGGCTAAAGAAAAGGGTCAGAAATCTTTGGCATTGGATACTGCAATTGGTATGTGGCAGTTACTATTTGCTGAAAAGCAATGGGCGTTGGTTGATCACTGGTGCCAGTTCCTACAGGCTCGACATAATAAAGCAATCTCTAGGGACACCTGGTCTCAATTATTGGAGTTTGCAAAGACTGTGGATCCTTCACTGTCTAATTATGATGCTGAAGGAGCTTGGCCGTATCTCATTGATGAGTTTGTGGAGTACTTGAATGAGAACAACATCATCCAAAAGGGCCAGCCGATTGACTGGAGCCTAAAACGAATAAAGAGACCAACAAAGGAAAAATAA 930 41.51 MEAGITNIFILHWDTTRGHFEFLTQPINHLSYIRFPSPNSQKMHKLGRGHRDKVQQFMAITGASEKVALHALKASDWHLEGAFDVFYSQPQIKAFTDSRHLEELYSRYKDPYVDMIMADGISVLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFISGLQALGIDSLEKFRERIQFMRTELKDEQKFREIYNFAFGWAKEKGQKSLALDTAIGMWQLLFAEKQWALVDHWCQFLQARHNKAISRDTWSQLLEFAKTVDPSLSNYDAEGAWPYLIDEFVEYLNENNIIQKGQPIDWSLKRIKRPTKEK* 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 23045180 23055363 - Vvi19g1150 Vvi19g1150 782649

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1150 309 ProSiteProfiles DCUN1 domain profile. 96 284 IPR005176 -
Vvi19g1150 309 PANTHER DEFECTIVE IN CULLIN NEDDYLATION PROTEIN 55 291 - -
Vvi19g1150 309 Pfam UBA-like domain 51 89 - -
Vvi19g1150 309 Gene3D - 95 184 - -
Vvi19g1150 309 Gene3D Cullin, PONY binding domain 185 293 IPR042460 -
Vvi19g1150 309 PANTHER RP42 RELATED 55 291 IPR014764 -
Vvi19g1150 309 Gene3D - 48 89 - -
Vvi19g1150 309 CDD UBA_DCNL 50 90 - -
Vvi19g1150 309 SUPERFAMILY UBA-like 49 88 IPR009060 GO:0005515
Vvi19g1150 309 Pfam Cullin binding 172 282 IPR005176 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1150 K17822 DCUN1D1_2; DCN1-like protein 1/2 - vvi:100245090 534.643
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1150 Blo04g00462 Blo13g00602 . . . . Bma08g00821 . . . . . . . Sed05g1833 Cpe04g00866 . Bhi05g01993 Tan02g0025 . . . . . . . . . . . . . . . . . Csa07g01210 . . . . . . Bpe15g00919 . Bma03g00495 . . . . . . . . Cpe15g00904 . . . . . . . . . . . . . . . . . . Cme01g01501
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003443 1 2 2 2 2 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 10 2 1 48