Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1151 ATGCAGACTGAGCTTCAGAGTGAGTCGTTTGATTACCGGACGGAGCTTCTGTCGCCAGCGCTGCCCGGAGAGAACGGGAGTGCGATGAGGGTGCCGTCGTGGCGAATCAATTTTGAGGAGTTTCAGGTTGCGGAGAAACAGAAGGATTCCAATTTTGGTGTGGCGAAGCTTGTGAAGACGATAAGAAAGCAGAAGAAGCTCGCAGACTATTACAAGAAGCAGGGGAAGCTACTGGAAGGGTTCAATGAAGTGGACGCCTTCACTGAATTGGGCGTCTTGCCTGGGAGTTTAACCGAGGATGAAATGAAGCAGCTTGCAAACAATGAGAGGCTGGCAATTCAGGCATCCAACATAGCAAACATGGTTCTCTTCATAGCAAAAGTGTATGCTTCGGTTGAGAGCAGGTCACTGGCGGTGATAGCATCCACCCTTGACTCTCTCTTGGATCTTTTATCCGGCTTTATTTTGTGGTTTACTGCTTCTGCTATGAGAAAACCAAACCAATATCAATATCCTATTGGGAAGAAGAGGATGCAACCTGTGGGAATCGTTGTTTTTGCATCGGTGATGGCTACTCTTGGATTACAAATATTGTTTGAATCTGGTCGGGAACTTATTATAAAGGCTCAACCTGACAGGGATCCTGTGAAAGAACGATGGATGATTGGGATAATGGTCTCAGTTACAGTGATAAAATTTGCACTCATGACATATTGTCGCAGATTCAAGAACGAAATTATTAGGGCATATGCTCAAGATCATTTCTTTGATGTCATTACCAACTCAATAGGTTTGGTAACTGCAGTCCTAGCCATTCACTTCTTCTGGTGGATTGATCCTCTTGGGGCCATCCTCATAGCTCTGTATACTATGGCTACTTGGGCTAAGACGGTTATGGAGAACGTGTGGTCATTGATTGGGCGAACAGCACCGCCGGAGTTCTTAGCAAAGCTAACATATCTAATATGGAACTATCACGAGGAGATCAAACATATTGACACTGTCAGGGCGTATAACTTTGGCTCCCAATACTTTGTGGAGGTTGATATAGTTGTGCCAGAGGACATGTCTCTAACTCAAGCGCACAACATCGGAGAGGCACTCCAAGAGAAGCTTGAGCAACTTCCGGAGGTGGAAAGAGCCTTTGTTCATATAGACTTTGAATACACTCATAAGCCTGAGCACATGCCCAAAAAGTGTTGA 1203 45.3 MQTELQSESFDYRTELLSPALPGENGSAMRVPSWRINFEEFQVAEKQKDSNFGVAKLVKTIRKQKKLADYYKKQGKLLEGFNEVDAFTELGVLPGSLTEDEMKQLANNERLAIQASNIANMVLFIAKVYASVESRSLAVIASTLDSLLDLLSGFILWFTASAMRKPNQYQYPIGKKRMQPVGIVVFASVMATLGLQILFESGRELIIKAQPDRDPVKERWMIGIMVSVTVIKFALMTYCRRFKNEIIRAYAQDHFFDVITNSIGLVTAVLAIHFFWWIDPLGAILIALYTMATWAKTVMENVWSLIGRTAPPEFLAKLTYLIWNYHEEIKHIDTVRAYNFGSQYFVEVDIVVPEDMSLTQAHNIGEALQEKLEQLPEVERAFVHIDFEYTHKPEHMPKKC* 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 23086958 23090029 + Vvi19g1151 Vvi19g1151 782650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1151 400 Gene3D Cation efflux protein transmembrane domain 111 305 IPR027469 -
Vvi19g1151 400 Pfam Dimerisation domain of Zinc Transporter 311 386 IPR027470 -
Vvi19g1151 400 PANTHER MITOCHONDRIAL METAL TRANSPORTER 1-RELATED 1 399 - -
Vvi19g1151 400 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 310 386 IPR036837 -
Vvi19g1151 400 Pfam Cation efflux family 115 305 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Vvi19g1151 400 PANTHER CATION DIFFUSION FACILITATOR FAMILY TRANSPORTER 1 399 - -
Vvi19g1151 400 SUPERFAMILY Cation efflux protein transmembrane domain-like 108 307 IPR027469 -
Vvi19g1151 400 TIGRFAM CDF: cation diffusion facilitator family transporter 115 386 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Vvi19g1151 400 Gene3D Cation efflux protein, cytoplasmic domain 317 399 IPR036837 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1151 - - vvi:100257125 785.023