Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1151 ATGCAGACTGAGCTTCAGAGTGAGTCGTTTGATTACCGGACGGAGCTTCTGTCGCCAGCGCTGCCCGGAGAGAACGGGAGTGCGATGAGGGTGCCGTCGTGGCGAATCAATTTTGAGGAGTTTCAGGTTGCGGAGAAACAGAAGGATTCCAATTTTGGTGTGGCGAAGCTTGTGAAGACGATAAGAAAGCAGAAGAAGCTCGCAGACTATTACAAGAAGCAGGGGAAGCTACTGGAAGGGTTCAATGAAGTGGACGCCTTCACTGAATTGGGCGTCTTGCCTGGGAGTTTAACCGAGGATGAAATGAAGCAGCTTGCAAACAATGAGAGGCTGGCAATTCAGGCATCCAACATAGCAAACATGGTTCTCTTCATAGCAAAAGTGTATGCTTCGGTTGAGAGCAGGTCACTGGCGGTGATAGCATCCACCCTTGACTCTCTCTTGGATCTTTTATCCGGCTTTATTTTGTGGTTTACTGCTTCTGCTATGAGAAAACCAAACCAATATCAATATCCTATTGGGAAGAAGAGGATGCAACCTGTGGGAATCGTTGTTTTTGCATCGGTGATGGCTACTCTTGGATTACAAATATTGTTTGAATCTGGTCGGGAACTTATTATAAAGGCTCAACCTGACAGGGATCCTGTGAAAGAACGATGGATGATTGGGATAATGGTCTCAGTTACAGTGATAAAATTTGCACTCATGACATATTGTCGCAGATTCAAGAACGAAATTATTAGGGCATATGCTCAAGATCATTTCTTTGATGTCATTACCAACTCAATAGGTTTGGTAACTGCAGTCCTAGCCATTCACTTCTTCTGGTGGATTGATCCTCTTGGGGCCATCCTCATAGCTCTGTATACTATGGCTACTTGGGCTAAGACGGTTATGGAGAACGTGTGGTCATTGATTGGGCGAACAGCACCGCCGGAGTTCTTAGCAAAGCTAACATATCTAATATGGAACTATCACGAGGAGATCAAACATATTGACACTGTCAGGGCGTATAACTTTGGCTCCCAATACTTTGTGGAGGTTGATATAGTTGTGCCAGAGGACATGTCTCTAACTCAAGCGCACAACATCGGAGAGGCACTCCAAGAGAAGCTTGAGCAACTTCCGGAGGTGGAAAGAGCCTTTGTTCATATAGACTTTGAATACACTCATAAGCCTGAGCACATGCCCAAAAAGTGTTGA 1203 45.3 MQTELQSESFDYRTELLSPALPGENGSAMRVPSWRINFEEFQVAEKQKDSNFGVAKLVKTIRKQKKLADYYKKQGKLLEGFNEVDAFTELGVLPGSLTEDEMKQLANNERLAIQASNIANMVLFIAKVYASVESRSLAVIASTLDSLLDLLSGFILWFTASAMRKPNQYQYPIGKKRMQPVGIVVFASVMATLGLQILFESGRELIIKAQPDRDPVKERWMIGIMVSVTVIKFALMTYCRRFKNEIIRAYAQDHFFDVITNSIGLVTAVLAIHFFWWIDPLGAILIALYTMATWAKTVMENVWSLIGRTAPPEFLAKLTYLIWNYHEEIKHIDTVRAYNFGSQYFVEVDIVVPEDMSLTQAHNIGEALQEKLEQLPEVERAFVHIDFEYTHKPEHMPKKC* 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 23086958 23090029 + Vvi19g1151 Vvi19g1151 782650

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1151 400 Gene3D Cation efflux protein transmembrane domain 111 305 IPR027469 -
Vvi19g1151 400 Pfam Dimerisation domain of Zinc Transporter 311 386 IPR027470 -
Vvi19g1151 400 PANTHER MITOCHONDRIAL METAL TRANSPORTER 1-RELATED 1 399 - -
Vvi19g1151 400 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 310 386 IPR036837 -
Vvi19g1151 400 Pfam Cation efflux family 115 305 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Vvi19g1151 400 PANTHER CATION DIFFUSION FACILITATOR FAMILY TRANSPORTER 1 399 - -
Vvi19g1151 400 SUPERFAMILY Cation efflux protein transmembrane domain-like 108 307 IPR027469 -
Vvi19g1151 400 TIGRFAM CDF: cation diffusion facilitator family transporter 115 386 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Vvi19g1151 400 Gene3D Cation efflux protein, cytoplasmic domain 317 399 IPR036837 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1151 - - - vvi:100257125 785.023
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1151 Blo04g00461 . . . . . . . . . . . . . . . Cpe16g00708 . . . . . . . Cla02g01828 Cam02g1937 Cec02g1964 Cco02g2003 Clacu02g1917 Cmu02g1866 Cre02g2179 . . . . . . . Cme11g01635 . . . . Bpe15g00920 . Bma03g00494 . . . . . . . . . Cpe05g01032 Bhi10g00937 . . . . . . . . . . . . . . Csa06g01150 Chy11g01042 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002645 3 3 4 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 2 2 6 4 2 58