Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1155 ATGGTGGCTGTCAAGGGAAAATTGAATGCAGCTCCAAGTCGAGTTGCAGGAGATAAAAAAAATCGCAAGAGTGTTGGCTTAAGTTTCAAGGTTTATTCTGAGAATGAGAGGGTTAATGTAGGTTCCCGTGATTCTGTTGGTACTAGTAGCACGAGGAAATCTGTGCAGTTCAACAAAGGGACTGTTCAGAGCAATTCAAGTGATTCAAAGGGGAATCTCAAGAGTTTTGAGAAGGACAAAGACAAGCGGAATAGTTCCTTTGTTCGAAGAAAAGCTTTGGCTGATGTCAGCAATGTTCAGGGAAACTGTTCCACTACTAGCATGCGTGACGGGTCCAAATCAGTGGTTACACTGGGTCAAGGCACTATCACTGTTTGTGCCTCATCAAGGAAACCTTCCATGGGTAAAATGGGAACAAATATAAGTCAAGGCGCTGGTGTTTGTAATACTTCAAAGAGAGCAAGTGCAAAAAATTTGAAGGCCTCTTCTAATAACCAAATGACCAAGGATAAGGGCCGTGAATCTGTTAATAATGCTCAAAGGACTGCGAGGCTCTCTCATGTATTGACAAGGAAGTCATTACCAGTTATAAGGAGGGTTAACAAGGTGGACAGAAGTGATCTAAAGCTATTTGAACTCTTTCTTTACTTCATTGAAATCCAGCCTACTTTGAGAACCACAGTCAAGACTTCTAATGTTCAAACTCAAAGGACATTGAAGTCCAAGCGGACATCGGTGTTAGACAAGTCAATATCTGGTGCAGCAATTTCATCCAAGAACAAGGAGAAACTAGTGCCATCTTCTCTTCCCGAAAGTATTGGATTCGTGGGTCCTTATCAACCAGCACAAGGAGAGCTTCCACCTGATGGCAATGCCAGCACTTCTACAAATACCTCAGATATCAATAACAGGAGAAAATCTGATCGCAGGAGATCTTTTACATTGTCATTGATGACAAGATCAAAGCAATTGGAGGAGCATGGTGAATTCAGGAAGCTGGAAAAGTTACCGAGTATAGATGACAATTGCAATCACCTAGAAGTTGCTGAATATGTTGAAGAAATCTACCAGTACTATTGGGTTACAGAGGCGCAGAATCCATCCATGCAAAATTATATGTCAATTCAGTCAGACATCACACCTCAGATGCGGGGCATATTGATCAATTGGCTAATTGAAGTACACTACAAATTTGAATTGATGCAAGAAACACTTTATCTCATGGTCACTTTGTTTGATCGATATCTCTCTCTGGTGCCAATTAAGAAGAATGACATGCAATTGGTTGGCCTTACCGCACTCTTGCTGGCATCTAAGTATGAGGACTTTTGGCATCCAAGGGTTAAAGATTTGATTAGCATTTCAGCAGAGTCATACACAAGAGACCAGATGCTTGGAATGGAGAAGGTTGTTCTTAATAAGTTGAAATTCCGTCTGAATGTACCTACACCATATGTTTTCATGATGAGGTTTCTGAAGGCTGCTCAGTCGGACAAAAGGCTTGAACATCTAGCATTCTACCTCATTGAGCTGTGCTTGGTTGAATACGAGGCTTTGAAGTACAAGCCCTCATTGCTATGTGCATCAGCTATCTATCTTGCGAGGTGCACCTTACAAAGGGCCCCTGCATGGACCCCATTGCTTCACAAGCATGCACGCTATGAAGAATCTCAAATCAGGGACTGTGCTGAGATGATCTTAAAGTTTCAAAAAGCTGCTAGAACAGGGCAGTTGAAAGTCACATACGAGAAATACATGAGGCCTGATCAAAGTGGTGTTGCTGCTATAACACCCTTGAATAGGCTTCCTCGTTAA 1815 41.98 MVAVKGKLNAAPSRVAGDKKNRKSVGLSFKVYSENERVNVGSRDSVGTSSTRKSVQFNKGTVQSNSSDSKGNLKSFEKDKDKRNSSFVRRKALADVSNVQGNCSTTSMRDGSKSVVTLGQGTITVCASSRKPSMGKMGTNISQGAGVCNTSKRASAKNLKASSNNQMTKDKGRESVNNAQRTARLSHVLTRKSLPVIRRVNKVDRSDLKLFELFLYFIEIQPTLRTTVKTSNVQTQRTLKSKRTSVLDKSISGAAISSKNKEKLVPSSLPESIGFVGPYQPAQGELPPDGNASTSTNTSDINNRRKSDRRRSFTLSLMTRSKQLEEHGEFRKLEKLPSIDDNCNHLEVAEYVEEIYQYYWVTEAQNPSMQNYMSIQSDITPQMRGILINWLIEVHYKFELMQETLYLMVTLFDRYLSLVPIKKNDMQLVGLTALLLASKYEDFWHPRVKDLISISAESYTRDQMLGMEKVVLNKLKFRLNVPTPYVFMMRFLKAAQSDKRLEHLAFYLIELCLVEYEALKYKPSLLCASAIYLARCTLQRAPAWTPLLHKHARYEESQIRDCAEMILKFQKAARTGQLKVTYEKYMRPDQSGVAAITPLNRLPR* 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 23135392 23145621 - Vvi19g1155 Vvi19g1155 782654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1155 604 MobiDBLite consensus disorder prediction 39 89 - -
Vvi19g1155 604 Gene3D - 475 602 - -
Vvi19g1155 604 Gene3D - 368 474 - -
Vvi19g1155 604 Pfam Cyclin, N-terminal domain 354 480 IPR006671 -
Vvi19g1155 604 SMART Cyclin_C_2 482 599 IPR004367 -
Vvi19g1155 604 MobiDBLite consensus disorder prediction 287 301 - -
Vvi19g1155 604 CDD CYCLIN 383 472 IPR013763 -
Vvi19g1155 604 Pfam Cyclin, C-terminal domain 482 598 IPR004367 -
Vvi19g1155 604 SUPERFAMILY Cyclin-like 481 601 IPR036915 -
Vvi19g1155 604 SUPERFAMILY Cyclin-like 344 480 IPR036915 -
Vvi19g1155 604 MobiDBLite consensus disorder prediction 72 89 - -
Vvi19g1155 604 MobiDBLite consensus disorder prediction 280 309 - -
Vvi19g1155 604 CDD CYCLIN 480 567 IPR013763 -
Vvi19g1155 604 PIRSF Cyclin_A_B_D_E 48 212 IPR039361 -
Vvi19g1155 604 PIRSF Cyclin_A_B_D_E 218 603 IPR039361 -
Vvi19g1155 604 MobiDBLite consensus disorder prediction 39 71 - -
Vvi19g1155 604 SMART cyclin_7 486 568 IPR013763 -
Vvi19g1155 604 SMART cyclin_7 389 473 IPR013763 -
Vvi19g1155 604 PANTHER CYCLINS 139 601 IPR039361 -
Vvi19g1155 604 PANTHER CYCLIN-B3-1-RELATED 139 601 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1155 K21777 - vvi:100260352 1049.27