Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1156 ATGGATTCTTCAACAATGCTGTACAACCAGCTCAAGTCATCAGAACCCTTTTTCTTGTTGGCTGGTCCCAATGTGATTGAATCTGAGGAGCACATTATGTATATGGCCAAAGCCATCAAGAGTCTCACATCAAAATTTGGGTTGAAGCTGGTTTTCAAGTCGAGCTTTGATAAAGCCAATCGAACCTCCTCAAAATCATTTCGGGGTCCTGGCATGATTGAAGGCCTGAAGATCCTTGAGAAGGTCAAAGTAGCATATGACATCCCCATAGTGACTGATGTACATGAAATTGAACAGTGTGAACCAGTTGGCAGAGTTGCAGACATCATTCAGATTCCAGCTTTCCTCTGTCGTCAGACAGATCTCCTAGTCGCTGCTGCCAAGACTGGAAAAATTATCAATATTAAGAAAGGCCAATTTTGTGCTCCCTCTGTCATGGTAAATTCTGCTGAAAAGATCAGATTGGCTGGGAATGAAAATGTGATGGTTTGTGAGAGGGGAACTATGTTTGGCTATAATGATCTGATTGTTGATCCACGCAACTTGGAGTGGATGAGGGAAGCTAATTGTCCTATTGTGGCAGATGTCACACATTCACTACAACAGCCTGCGGGGAGAAAACTGGAAGGCGGAGGTGTTGCCAGTGGAGGTCTTCGTGAATTGATACCATGCATTGCGAGGACAGCAGTTGCTGTTGGAGTGGATGGAATTTTCATGGAGGTGCACAATGATCCTCTAAATGCTCCAGTCGACGGTCCAACACAATGGCCTCTACGCCATTTGGAGGAACTGCTGGAAGAGCTTGTGGCAATAGCTAGGGTAAGCAAGGGGAAGCAACGCTTCAACATTGATCTCACACCAGTCCATGATTAA 873 45.13 MDSSTMLYNQLKSSEPFFLLAGPNVIESEEHIMYMAKAIKSLTSKFGLKLVFKSSFDKANRTSSKSFRGPGMIEGLKILEKVKVAYDIPIVTDVHEIEQCEPVGRVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCAPSVMVNSAEKIRLAGNENVMVCERGTMFGYNDLIVDPRNLEWMREANCPIVADVTHSLQQPAGRKLEGGGVASGGLRELIPCIARTAVAVGVDGIFMEVHNDPLNAPVDGPTQWPLRHLEELLEELVAIARVSKGKQRFNIDLTPVHD* 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 23172290 23185359 - Vvi19g1156 Vvi19g1156 782655

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1156 290 Gene3D Aldolase class I 5 284 IPR013785 -
Vvi19g1156 290 SUPERFAMILY Aldolase 12 277 - -
Vvi19g1156 290 Hamap 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 11 278 IPR006269 GO:0005737|GO:0008676
Vvi19g1156 290 Pfam DAHP synthetase I family 15 266 IPR006218 GO:0009058
Vvi19g1156 290 PANTHER PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 2 284 IPR006269 GO:0005737|GO:0008676
Vvi19g1156 290 TIGRFAM KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 16 276 IPR006269 GO:0005737|GO:0008676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1156 K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] - vvi:100255394 573.933
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1156 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005783 5 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 2 1 38