Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1157 ATGAAAATGACCAAGGTGACGGGCCATAAGCCGCGATCTCTGTTTACACATTTCGTCTGCGCTCCGAAGGCCGATCGATCTCCGAGTTCAAGGAACATGAATTTCAACAATATCAAAGCTCCCAAGGTGCCAGGCGGTGGTGCAGCTTCTGCTTTGATTAAGCTGGGAGTTGTTGGTGGGCTTGGTTTGTATGGAGCTATTAACAGTCTGTACAATGTTGAGGGAGGTCATCGGGCCATTGTGTTTAATCGCATAGTTGGTGTCAAGGACAAGGTTTATCCCGAGGGAACTCACCTGATGATCCCATGGTTTGATAGGCCAGTCATCTATGATGTCCGTACGCGCCCTCATCTTGTGGAGAGTACTTCAGGGAGCCATGACCTCCAGATGGTAAAGATTGGTCTTCGAGTTCTTACCCGTCCTCTGCCAGACCAGTTACCTACAATTTATCGAACCCTTGGTGAGAACTACAATGAAAGAGTCCTGCCTTCAATAATTCATGAAACTCTGAAAGCTGTGGTTGCACAGTATAATGCTAGCCAGCTTATTACTCAGAGAGAGACTGTTAGTAGGGAAATACGTAAGTTATTGACAGAAAGGGCAGCCAATTTCAACATTGCTCTGGATGATGTGTCCATTACAAGCCTTACTTTTGGGAGGGAATTCACTGCTGCTATTGAAGCTAAACAAGTGGCTGCACAAGAGGCTGAAAGGGCCAAATTTGTTGTGGAAAAAGCTGAGCAAGACAAGAGGAGTGCTATTATCAGAGCACAGGGTGAGGCTAAGAGTGCCCAGCTGATAGGTCAAGCTATTGCCAACAATCCAGCATTCATCACGCTCAGAAAAATTGAAGCTTCCCGAGAAATTGCACATACAATTTCAAACTCTGCCAACAAGGTTTTCTTGAATTCCAATGATTTGTTGCTGAACCTTCAGGAAATGAATTTGCAGAGTGCCAGCTGA 963 45.59 MKMTKVTGHKPRSLFTHFVCAPKADRSPSSRNMNFNNIKAPKVPGGGAASALIKLGVVGGLGLYGAINSLYNVEGGHRAIVFNRIVGVKDKVYPEGTHLMIPWFDRPVIYDVRTRPHLVESTSGSHDLQMVKIGLRVLTRPLPDQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKLLTERAANFNIALDDVSITSLTFGREFTAAIEAKQVAAQEAERAKFVVEKAEQDKRSAIIRAQGEAKSAQLIGQAIANNPAFITLRKIEASREIAHTISNSANKVFLNSNDLLLNLQEMNLQSAS* 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 23186036 23190813 + Vvi19g1157 Vvi19g1157 782656

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1157 320 Pfam SPFH domain / Band 7 family 72 247 IPR001107 -
Vvi19g1157 320 PANTHER PROHIBITIN-1, MITOCHONDRIAL-LIKE 33 319 - -
Vvi19g1157 320 Gene3D Band 7 domain 98 232 IPR036013 -
Vvi19g1157 320 PANTHER PROHIBITIN 33 319 IPR000163 GO:0016020
Vvi19g1157 320 SUPERFAMILY Band 7/SPFH domain 101 237 IPR036013 -
Vvi19g1157 320 SMART PHB_4 69 230 IPR001107 -
Vvi19g1157 320 Coils Coil 229 249 - -
Vvi19g1157 320 CDD SPFH_prohibitin 70 264 IPR000163 GO:0016020
Vvi19g1157 320 PRINTS Prohibitin signature 113 129 IPR000163 GO:0016020
Vvi19g1157 320 PRINTS Prohibitin signature 131 150 IPR000163 GO:0016020
Vvi19g1157 320 PRINTS Prohibitin signature 154 172 IPR000163 GO:0016020
Vvi19g1157 320 PRINTS Prohibitin signature 177 193 IPR000163 GO:0016020
Vvi19g1157 320 PRINTS Prohibitin signature 200 219 IPR000163 GO:0016020
Vvi19g1157 320 PRINTS Prohibitin signature 225 248 IPR000163 GO:0016020
Vvi19g1157 320 PRINTS Prohibitin signature 248 264 IPR000163 GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1157 K17081 PHB2; prohibitin 2 - vvi:100250221 548.125
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1157 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005209 2 1 1 3 2 1 2 0 0 1 0 1 1 1 1 2 0 4 2 0 1 1 2 1 1 1 1 2 3 2 40