Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1163 ATGGAGAGAAGAGGTGGCAGTATCAGACTCTGCATTTTGGCTCTCTATGTCTCTTTCTTGGTCATTTCTTCATCTCATCACTGTGATGCGAAGAGGGCAATGCGGACACTGAGAGGTTCCAAGCATAGCAGTTTGATCAAGAAGTTGAATGTGAAGCGTTTGGATGGCGATGTGTCGATGTTGGATTCAAGGAAGACGAATACGCAACCTTATGGTGTGAGTTCGCCATTCTCTTTGCCACCCTTTGATTCTCTAGGTCCTATTCCGTTGCCGGATACTGCTCCTCCGTTTTGTATATATCCACCTTCTACTCCACAACCACCTTCTACTATTGTTCCTACCCCTATTGGAATCACACCACCCTTCTATTTTCCACCCGTCGTTCCCATCCAAGGTCCACCTCCAAGCCCAGTTGGTGTCATCCCGGGCTCGCCTGAGTATACTCCGAACCCTAGTCCTCCAGAGGCATTTCCCGGTCCAAACCCTAATCCACCCGTGATCTTTCCCGCTCCGAACCCTAATCCACCTGAGACGGTTCCTAGCCCGAATCCTAATCCACCTCAGATTGTTCCTAGCCCGATCGTTGTCTTTCCTGGGCCCCCGGAATTTACACCCGCTCCACCTTCACCCAACCCACCTTTCTATGAGCCCAGCCCACCCAATTATAGGCCTTCACCTGGTGGTCCTGGCGGATTTGTTCCAAGCCCACCTCATTATGTTCCTACGCCTAGAGGGCCCGGTGGGCCTGGTGGGTTTGTTCCAACCCCACCATTTCAACCGCCGGTGGTGTTTCCTCCGCCTACCGTCCCACCACCTCCACACAAGGGCCCAAACTTCCCCTTGTGGTGCGTCGCGAAGCCAACGGTGCCCGACCCGATCATCGAAGAGGCTATGAACTATGCGTGTGGGTCGGGAGCGGATTGCGCTTCAATTGGGTCCAGTGGGTCATGCTTTCAGCCCGACACACTATTTGCTCATGCCTCGTATGCTTTCAATAGCTATTGGCAAAGGACTAAGGTGGCTGGTGGCACATGCGATTTTGGAGGAACCGCCATGCTAGTCAGCGTTGATCCAAGTTATGATGGGTGCCATTTCATCTATTTATGA 1107 52.48 MERRGGSIRLCILALYVSFLVISSSHHCDAKRAMRTLRGSKHSSLIKKLNVKRLDGDVSMLDSRKTNTQPYGVSSPFSLPPFDSLGPIPLPDTAPPFCIYPPSTPQPPSTIVPTPIGITPPFYFPPVVPIQGPPPSPVGVIPGSPEYTPNPSPPEAFPGPNPNPPVIFPAPNPNPPETVPSPNPNPPQIVPSPIVVFPGPPEFTPAPPSPNPPFYEPSPPNYRPSPGGPGGFVPSPPHYVPTPRGPGGPGGFVPTPPFQPPVVFPPPTVPPPPHKGPNFPLWCVAKPTVPDPIIEEAMNYACGSGADCASIGSSGSCFQPDTLFAHASYAFNSYWQRTKVAGGTCDFGGTAMLVSVDPSYDGCHFIYL* 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 23265198 23266600 + Vvi19g1163 Vvi19g1163 782662

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1163 368 PANTHER BETA-1,3 GLUCANASE 141 367 IPR044788 -
Vvi19g1163 368 Gene3D - 278 365 - -
Vvi19g1163 368 Pfam X8 domain 281 352 IPR012946 -
Vvi19g1163 368 PRINTS Proline rich extensin signature 79 91 - -
Vvi19g1163 368 PRINTS Proline rich extensin signature 118 130 - -
Vvi19g1163 368 PRINTS Proline rich extensin signature 133 154 - -
Vvi19g1163 368 PRINTS Proline rich extensin signature 158 174 - -
Vvi19g1163 368 PRINTS Proline rich extensin signature 183 200 - -
Vvi19g1163 368 MobiDBLite consensus disorder prediction 135 259 - -
Vvi19g1163 368 SMART X8_cls 281 365 IPR012946 -
Vvi19g1163 368 PANTHER EXTENSIN-LIKE 141 367 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1163 - - - vvi:100245083 513.072
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1163 . . . . Bpe07g00474 . . . . . . . . . . . . Bhi05g01989 . . Lac12g0036 Hepe02g0010 . . . . . . . . . . . . . . Csa07g01215 . . . . . . . . . Bma12g00577 . . . . . . . Cpe15g00907 . . . . . . . . . . . . . . . . . Chy01g00848 Cme01g01498
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007417 1 1 1 3 1 1 1 1 1 1 1 1 0 1 1 1 1 3 1 1 1 1 1 1 0 1 1 3 2 2 36