Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1163 ATGGAGAGAAGAGGTGGCAGTATCAGACTCTGCATTTTGGCTCTCTATGTCTCTTTCTTGGTCATTTCTTCATCTCATCACTGTGATGCGAAGAGGGCAATGCGGACACTGAGAGGTTCCAAGCATAGCAGTTTGATCAAGAAGTTGAATGTGAAGCGTTTGGATGGCGATGTGTCGATGTTGGATTCAAGGAAGACGAATACGCAACCTTATGGTGTGAGTTCGCCATTCTCTTTGCCACCCTTTGATTCTCTAGGTCCTATTCCGTTGCCGGATACTGCTCCTCCGTTTTGTATATATCCACCTTCTACTCCACAACCACCTTCTACTATTGTTCCTACCCCTATTGGAATCACACCACCCTTCTATTTTCCACCCGTCGTTCCCATCCAAGGTCCACCTCCAAGCCCAGTTGGTGTCATCCCGGGCTCGCCTGAGTATACTCCGAACCCTAGTCCTCCAGAGGCATTTCCCGGTCCAAACCCTAATCCACCCGTGATCTTTCCCGCTCCGAACCCTAATCCACCTGAGACGGTTCCTAGCCCGAATCCTAATCCACCTCAGATTGTTCCTAGCCCGATCGTTGTCTTTCCTGGGCCCCCGGAATTTACACCCGCTCCACCTTCACCCAACCCACCTTTCTATGAGCCCAGCCCACCCAATTATAGGCCTTCACCTGGTGGTCCTGGCGGATTTGTTCCAAGCCCACCTCATTATGTTCCTACGCCTAGAGGGCCCGGTGGGCCTGGTGGGTTTGTTCCAACCCCACCATTTCAACCGCCGGTGGTGTTTCCTCCGCCTACCGTCCCACCACCTCCACACAAGGGCCCAAACTTCCCCTTGTGGTGCGTCGCGAAGCCAACGGTGCCCGACCCGATCATCGAAGAGGCTATGAACTATGCGTGTGGGTCGGGAGCGGATTGCGCTTCAATTGGGTCCAGTGGGTCATGCTTTCAGCCCGACACACTATTTGCTCATGCCTCGTATGCTTTCAATAGCTATTGGCAAAGGACTAAGGTGGCTGGTGGCACATGCGATTTTGGAGGAACCGCCATGCTAGTCAGCGTTGATCCAAGTTATGATGGGTGCCATTTCATCTATTTATGA 1107 52.48 MERRGGSIRLCILALYVSFLVISSSHHCDAKRAMRTLRGSKHSSLIKKLNVKRLDGDVSMLDSRKTNTQPYGVSSPFSLPPFDSLGPIPLPDTAPPFCIYPPSTPQPPSTIVPTPIGITPPFYFPPVVPIQGPPPSPVGVIPGSPEYTPNPSPPEAFPGPNPNPPVIFPAPNPNPPETVPSPNPNPPQIVPSPIVVFPGPPEFTPAPPSPNPPFYEPSPPNYRPSPGGPGGFVPSPPHYVPTPRGPGGPGGFVPTPPFQPPVVFPPPTVPPPPHKGPNFPLWCVAKPTVPDPIIEEAMNYACGSGADCASIGSSGSCFQPDTLFAHASYAFNSYWQRTKVAGGTCDFGGTAMLVSVDPSYDGCHFIYL* 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 23265198 23266600 + Vvi19g1163 Vvi19g1163 782662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1163 368 PANTHER BETA-1,3 GLUCANASE 141 367 IPR044788 -
Vvi19g1163 368 Gene3D - 278 365 - -
Vvi19g1163 368 Pfam X8 domain 281 352 IPR012946 -
Vvi19g1163 368 PRINTS Proline rich extensin signature 79 91 - -
Vvi19g1163 368 PRINTS Proline rich extensin signature 118 130 - -
Vvi19g1163 368 PRINTS Proline rich extensin signature 133 154 - -
Vvi19g1163 368 PRINTS Proline rich extensin signature 158 174 - -
Vvi19g1163 368 PRINTS Proline rich extensin signature 183 200 - -
Vvi19g1163 368 MobiDBLite consensus disorder prediction 135 259 - -
Vvi19g1163 368 SMART X8_cls 281 365 IPR012946 -
Vvi19g1163 368 PANTHER EXTENSIN-LIKE 141 367 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1163 - - vvi:100245083 513.072