Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1164 ATGGACACCGTCACCGAATCTGCCATGGCCGTGGCCATGGCCACTGTTGGCGGCGTCGGAATCATCCACTCCAACAACTCCGCTGCGGAGCAGGCGGCGTTGGTCCGTTCCGCCAAGTCGCGGCGTGTTCCTTTCGTGTCGGATCCAGTTGTGAAGTCCGCGTCTGATTGGGAGAAATTGAGCGATAAGGGACTCAGTTTTGTGCCGTTGGTAAGGGATGATGAAGTGGTGGATGTGGTGACCACGGCGGATGTGGAGAGAATTCGTGGTTTTCCGAAACTGGGGATGCCGTCGTTGGATGCAAAAGGCGAGTTCTTGGTGGGAGCGGCGATAGGGACGAGAGAGTCGGATAAGGAAAGGTTGGAGCATTTGGTGAAGGCAGGTGCCAATGTTATTGTATTGGATAGCTCACAAGGGAATTCAATTTATCAAATTGAGATGACCAAGTATGCCAAGAAAATGTTTCCGGAAGTTGATGTGATTGGTGGGAATGTGGTTACGATAAGACAAGCTCAAAACTTGATTCAGGCAGGGGTGGATGGGTTGAGAGTTGGGATGGGGTCTGGCTCCATTTGCACCACACAGGAGGTTTGTGCAGTGGGAAGAGGGCAGGCCACTGCTGTTTACAAGGTATCTTCTATTGCTGAGAGAAGTGGTGTGCCAGTCATTGCTGATGGTGGCATTTCAAACTCTGGGCATATCGTCAAGGCTTTGACTCTTGGAGCATCTACGGTGATGATGGGGAGCTTCTTGGCTGGAAGCAGTGAAGCTCCTGGGGCCTACGAGAATAAGAATGGTCTCAAGATTAAGAAATATAGAGGCATGGGATCCCTAGAAGCCATGACTAAAGGGAGTGATGCTCGATACTTGGGTGATACAGCTAAGCTGAAGATTGCCCAGGGTGTTGTTGGAGCAGTTGCAGACAAAGGTTCTGTTTTAAAGTTTATACCTTACACAATGCAAGCAGTTAAGCAAGGGTTCCAAGATCTTGGTGCGTCTTCTCTGCAATCTGCTCATGACCTGCTAAGATCAGAGTTAAGGCTTGAGGTCCGTACTGGAGCAGCGCAAGTTGAAGGTGGAGTTCATGGGCTGGTTTCTCATGAAAAGAAGTATTTTTGA 1119 49.78 MDTVTESAMAVAMATVGGVGIIHSNNSAAEQAALVRSAKSRRVPFVSDPVVKSASDWEKLSDKGLSFVPLVRDDEVVDVVTTADVERIRGFPKLGMPSLDAKGEFLVGAAIGTRESDKERLEHLVKAGANVIVLDSSQGNSIYQIEMTKYAKKMFPEVDVIGGNVVTIRQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAERSGVPVIADGGISNSGHIVKALTLGASTVMMGSFLAGSSEAPGAYENKNGLKIKKYRGMGSLEAMTKGSDARYLGDTAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSELRLEVRTGAAQVEGGVHGLVSHEKKYF* 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 23279324 23283793 + Vvi19g1164 Vvi19g1164 782663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1164 372 SUPERFAMILY Inosine monophosphate dehydrogenase (IMPDH) 1 371 - -
Vvi19g1164 372 CDD IMPDH 1 347 IPR001093 GO:0003824
Vvi19g1164 372 Gene3D Aldolase class I 59 372 IPR013785 -
Vvi19g1164 372 PANTHER INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED 60 372 IPR005990 GO:0003938|GO:0006164
Vvi19g1164 372 PANTHER INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED 1 48 IPR005990 GO:0003938|GO:0006164
Vvi19g1164 372 Gene3D Aldolase class I 1 58 IPR013785 -
Vvi19g1164 372 PANTHER INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE 60 372 - -
Vvi19g1164 372 PANTHER INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE 1 48 - -
Vvi19g1164 372 Pfam IMP dehydrogenase / GMP reductase domain 1 362 IPR001093 GO:0003824
Vvi19g1164 372 SMART IMPDH_2 1 362 - -
Vvi19g1164 372 ProSitePatterns IMP dehydrogenase / GMP reductase signature. 182 194 IPR015875 GO:0016491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1164 K00088 - vvi:100245095 665.996