Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1165 ATGGTGTGTGGTATCTGTCATTTTCCCTCGGCCCCGGAGGACTGTGAAATCTTTCTCTCTGCTATTCTTTTCTGCACACTTGGTAAAACGACAGCAATGGCCCTCTACAGCTCCAACAGTCTTCTTCTTCTTCTTCACCACAAACCCAAGAGCAGCTGCGTCACTGCACCCATATCAGCTTCTCTTAGTCCTGGACTAAAGACTTGGACAGAAGGCAATCATGTTGGTCTGGGCTTTGAAGGGACCAAGGAAAGAATCAAGAAGATGTTTGACAAGGTTGAGCTTTCGGTATCTTCATATGACACAGCTTGGGTTGCTATGGTCCCTTCTCCATATTCCTCACAGGCCCCATACTTCCCGGAGTGTGTGAATTGGTTATTGGAAAATCAGTCTCATGATGGCTCATGGGGTCTTCCTCATCCCCATCCCATGTTAGTCAAAGATGCTCTTTCATCTACTTTGGCATCTGTCCTTGCACTCAAGCGATGGGGTGTTGGTGAAGAGCAAAGGAACAAGGGGCTCTGGTTTATTGCATCCAATTTTGCTTCAGTTAGCGATGAGAAACAACATTCTCCAATTGGATTCGATATAATATTTCCTGGTATGATTGAGTATGCCAAAGAATTAGATTTGAACCTCCCTTTGGGGCAAAGAGATGTAGATGCTATGCTTCAGAAGAGGGATTTGGAGCTCAAAGGAAGCTTGGGAAGCAACACTAAGAGCAGAGAAGCCTACTTAGCATATATTTCGGAAGGAATGGGAAGGTTACAAGACTGGGAAATGGTTATGAAATATCAGATGAAGAATGGGTCTCTGCTCAATTCACCTTCTGCCACAGCAGCTGCTCTTTCTCACCTTCAAAATGCGGGTTGTCTGAATTACCTTCGATCTCTTTTAGAGAAGTTTGGGAATGCAGTCCCAACAGTGTATCCTCTAGATTTATATGCTCGTTTATGTTTGGTTGACAATCTTGAAAGGTTGGGAATTGATCGGTATTTTAGGATGGAGATCAGAAGTGTATTGGATGAAACATACAGATGCTGGCTGCAGAGGGAGGAAGAGATATTTGCAGACAGAGCCACCTGTGCAATCGCATTTCGGATACTACGTTTAAATGGATATGACATCTCTTCAGTTCCATTAGCTCAATTTGCTGAAGACGATCAGTATTTCAAGTTTGGACAAGATTTTAAGGACTTGGGGGCTGCCCTTGAATTATTTAGGGCTTCAGAGATGATTATACACCCAGATGAAGTGGTTCTGGAGAAACAAAACTCATGGTCAAGTCATTTTCTAAGACAGGGACTATCGAACAGTTCAATTCATGCAGATAGACTCAATAAGTACATTGCCCAAGAGGTGGAGGATGCTCTTAGGTTTCCCTACTACGCAAATTTGGATCGCATAGCAAACAGAAGAAGTATTGAGCATTATAATGTAGATGATACAAGGATATTAAAAACTGCATATCGCTCTTCACATGTCTGCAACAAAGATTTCCTAAAACTAGCAGTTGAAGACTTCAATTTCTGTCAATCAATACACCAAAACGAACTCAAACAACTTGAGAGGTGGATTATAGAGAACAGATTAGACAAGCTAAAGTTTGCGAGGCAGAAGCTGGCCTACTGTTACTTCTCTGCTGCAGCAACCATATTCTCTCCTGAACAATCTGATGCCCGCCTTTCGTGGGCCAAAAACAGTGTTCTCACAACTGTGGTTGATGACTTCTTTGACATTGGAGGCTCTGAAGAGGAGCTCCTAAACCTTATTCAACTGGTTGAGAAGTGGGATATAGATGTAGCCGTGGATTGTTGTTCTGAACAAGTTGAGATCGTTTTTTCAGCACTCCACAGCACAATATCTGAGATTGGAGTCAAAGCATCAGCATGGCAAGCCCGTAACGTGACCAGCCATATAATTGATATCTGGCTGAAGTTGCTAAGATCTATGTTACAAGAAGCTCAGTGGGTGAGTAATAAATCAGCTCCAACAATGGATGAATACATGACAAATGCATATGTATCCTTTGCTCTGGGACCAATTGTCCTCCCGGCGCTCTATTTTGTTGGTCCTAAGCTTTCAGAGGAGGTTGTTGAGGGACCTGAGTGCCATAAACTATATAAGCTTATGAGCACCTGTGGGCGTCTTTTGAATGATATCCACAGCTTTAAGAGGGAGTCCAAGGAAGGGAAAGCGAATGCTCTAGCACTACACATGATACATGGCAATGGTGTCACTACTGAAGAACAGGCCATCAGAGAGATGAAGGGTTTAGTTAAGAGTCAGAGGAGAGAACTTCAGAGATTAGTTCTACAGGAGAAGGGTAGCACAGTACCAAGAATTTGCAAGGATTTATTTTGGAAAATGAGCAAAGTGTTGCACACATTTTATGAGAAAGACGATGGATTCACTTCACATGACATGCTCCGTGCTGTGAAATCAGTCATTTATGAACCTGTTCTTCTTGCTGAATTCTAA 2481 42.77 MVCGICHFPSAPEDCEIFLSAILFCTLGKTTAMALYSSNSLLLLLHHKPKSSCVTAPISASLSPGLKTWTEGNHVGLGFEGTKERIKKMFDKVELSVSSYDTAWVAMVPSPYSSQAPYFPECVNWLLENQSHDGSWGLPHPHPMLVKDALSSTLASVLALKRWGVGEEQRNKGLWFIASNFASVSDEKQHSPIGFDIIFPGMIEYAKELDLNLPLGQRDVDAMLQKRDLELKGSLGSNTKSREAYLAYISEGMGRLQDWEMVMKYQMKNGSLLNSPSATAAALSHLQNAGCLNYLRSLLEKFGNAVPTVYPLDLYARLCLVDNLERLGIDRYFRMEIRSVLDETYRCWLQREEEIFADRATCAIAFRILRLNGYDISSVPLAQFAEDDQYFKFGQDFKDLGAALELFRASEMIIHPDEVVLEKQNSWSSHFLRQGLSNSSIHADRLNKYIAQEVEDALRFPYYANLDRIANRRSIEHYNVDDTRILKTAYRSSHVCNKDFLKLAVEDFNFCQSIHQNELKQLERWIIENRLDKLKFARQKLAYCYFSAAATIFSPEQSDARLSWAKNSVLTTVVDDFFDIGGSEEELLNLIQLVEKWDIDVAVDCCSEQVEIVFSALHSTISEIGVKASAWQARNVTSHIIDIWLKLLRSMLQEAQWVSNKSAPTMDEYMTNAYVSFALGPIVLPALYFVGPKLSEEVVEGPECHKLYKLMSTCGRLLNDIHSFKRESKEGKANALALHMIHGNGVTTEEQAIREMKGLVKSQRRELQRLVLQEKGSTVPRICKDLFWKMSKVLHTFYEKDDGFTSHDMLRAVKSVIYEPVLLAEF* 827
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 23284513 23291080 - Vvi19g1165 Vvi19g1165 782664

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1165 826 Pfam Terpene synthase, N-terminal domain 258 458 IPR001906 GO:0010333|GO:0016829
Vvi19g1165 826 Pfam Terpene synthase family, metal binding domain 501 765 IPR005630 GO:0000287|GO:0010333|GO:0016829
Vvi19g1165 826 Coils Coil 753 773 - -
Vvi19g1165 826 Gene3D - 88 508 IPR036965 GO:0010333|GO:0016829
Vvi19g1165 826 Gene3D Farnesyl Diphosphate Synthase 511 825 IPR008949 -
Vvi19g1165 826 PANTHER ENT-COPALYL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC 89 819 - -
Vvi19g1165 826 SFLD Terpene Cyclase Like 1 N-term 80 492 - -
Vvi19g1165 826 PANTHER ENT-KAUR-16-ENE SYNTHASE, CHLOROPLASTIC 89 819 - -
Vvi19g1165 826 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 268 482 IPR008930 -
Vvi19g1165 826 SFLD Isoprenoid Synthase Type I 497 821 - -
Vvi19g1165 826 Gene3D - 96 299 - -
Vvi19g1165 826 SFLD Terpene Cyclase Like 1 C Terminal Domain 497 821 IPR034741 -
Vvi19g1165 826 CDD Terpene_cyclase_plant_C1 308 820 IPR044814 GO:0010333|GO:0016102
Vvi19g1165 826 SUPERFAMILY Terpenoid synthases 497 821 IPR008949 -
Vvi19g1165 826 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 99 294 IPR008930 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1165 K04121 E4.2.3.19; ent-kaurene synthase [EC:4.2.3.19] - vvi:100267397 1642.09
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1165 Blo04g00457 . . . . . Bma08g00824 . . . . . . . . . . Bhi05g01987 . . . . . . . . . . . . . . . . . . Csa07g01217 . . . . . . Bpe15g00924 . Bma03g00490 . . . . . . . . Cpe15g00909 . . . . . . . . . . . . . . . . . Chy01g00846 Cme01g01495
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003981 2 5 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 2 2 1 1 1 2 1 44