Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1165 ATGGTGTGTGGTATCTGTCATTTTCCCTCGGCCCCGGAGGACTGTGAAATCTTTCTCTCTGCTATTCTTTTCTGCACACTTGGTAAAACGACAGCAATGGCCCTCTACAGCTCCAACAGTCTTCTTCTTCTTCTTCACCACAAACCCAAGAGCAGCTGCGTCACTGCACCCATATCAGCTTCTCTTAGTCCTGGACTAAAGACTTGGACAGAAGGCAATCATGTTGGTCTGGGCTTTGAAGGGACCAAGGAAAGAATCAAGAAGATGTTTGACAAGGTTGAGCTTTCGGTATCTTCATATGACACAGCTTGGGTTGCTATGGTCCCTTCTCCATATTCCTCACAGGCCCCATACTTCCCGGAGTGTGTGAATTGGTTATTGGAAAATCAGTCTCATGATGGCTCATGGGGTCTTCCTCATCCCCATCCCATGTTAGTCAAAGATGCTCTTTCATCTACTTTGGCATCTGTCCTTGCACTCAAGCGATGGGGTGTTGGTGAAGAGCAAAGGAACAAGGGGCTCTGGTTTATTGCATCCAATTTTGCTTCAGTTAGCGATGAGAAACAACATTCTCCAATTGGATTCGATATAATATTTCCTGGTATGATTGAGTATGCCAAAGAATTAGATTTGAACCTCCCTTTGGGGCAAAGAGATGTAGATGCTATGCTTCAGAAGAGGGATTTGGAGCTCAAAGGAAGCTTGGGAAGCAACACTAAGAGCAGAGAAGCCTACTTAGCATATATTTCGGAAGGAATGGGAAGGTTACAAGACTGGGAAATGGTTATGAAATATCAGATGAAGAATGGGTCTCTGCTCAATTCACCTTCTGCCACAGCAGCTGCTCTTTCTCACCTTCAAAATGCGGGTTGTCTGAATTACCTTCGATCTCTTTTAGAGAAGTTTGGGAATGCAGTCCCAACAGTGTATCCTCTAGATTTATATGCTCGTTTATGTTTGGTTGACAATCTTGAAAGGTTGGGAATTGATCGGTATTTTAGGATGGAGATCAGAAGTGTATTGGATGAAACATACAGATGCTGGCTGCAGAGGGAGGAAGAGATATTTGCAGACAGAGCCACCTGTGCAATCGCATTTCGGATACTACGTTTAAATGGATATGACATCTCTTCAGTTCCATTAGCTCAATTTGCTGAAGACGATCAGTATTTCAAGTTTGGACAAGATTTTAAGGACTTGGGGGCTGCCCTTGAATTATTTAGGGCTTCAGAGATGATTATACACCCAGATGAAGTGGTTCTGGAGAAACAAAACTCATGGTCAAGTCATTTTCTAAGACAGGGACTATCGAACAGTTCAATTCATGCAGATAGACTCAATAAGTACATTGCCCAAGAGGTGGAGGATGCTCTTAGGTTTCCCTACTACGCAAATTTGGATCGCATAGCAAACAGAAGAAGTATTGAGCATTATAATGTAGATGATACAAGGATATTAAAAACTGCATATCGCTCTTCACATGTCTGCAACAAAGATTTCCTAAAACTAGCAGTTGAAGACTTCAATTTCTGTCAATCAATACACCAAAACGAACTCAAACAACTTGAGAGGTGGATTATAGAGAACAGATTAGACAAGCTAAAGTTTGCGAGGCAGAAGCTGGCCTACTGTTACTTCTCTGCTGCAGCAACCATATTCTCTCCTGAACAATCTGATGCCCGCCTTTCGTGGGCCAAAAACAGTGTTCTCACAACTGTGGTTGATGACTTCTTTGACATTGGAGGCTCTGAAGAGGAGCTCCTAAACCTTATTCAACTGGTTGAGAAGTGGGATATAGATGTAGCCGTGGATTGTTGTTCTGAACAAGTTGAGATCGTTTTTTCAGCACTCCACAGCACAATATCTGAGATTGGAGTCAAAGCATCAGCATGGCAAGCCCGTAACGTGACCAGCCATATAATTGATATCTGGCTGAAGTTGCTAAGATCTATGTTACAAGAAGCTCAGTGGGTGAGTAATAAATCAGCTCCAACAATGGATGAATACATGACAAATGCATATGTATCCTTTGCTCTGGGACCAATTGTCCTCCCGGCGCTCTATTTTGTTGGTCCTAAGCTTTCAGAGGAGGTTGTTGAGGGACCTGAGTGCCATAAACTATATAAGCTTATGAGCACCTGTGGGCGTCTTTTGAATGATATCCACAGCTTTAAGAGGGAGTCCAAGGAAGGGAAAGCGAATGCTCTAGCACTACACATGATACATGGCAATGGTGTCACTACTGAAGAACAGGCCATCAGAGAGATGAAGGGTTTAGTTAAGAGTCAGAGGAGAGAACTTCAGAGATTAGTTCTACAGGAGAAGGGTAGCACAGTACCAAGAATTTGCAAGGATTTATTTTGGAAAATGAGCAAAGTGTTGCACACATTTTATGAGAAAGACGATGGATTCACTTCACATGACATGCTCCGTGCTGTGAAATCAGTCATTTATGAACCTGTTCTTCTTGCTGAATTCTAA 2481 42.77 MVCGICHFPSAPEDCEIFLSAILFCTLGKTTAMALYSSNSLLLLLHHKPKSSCVTAPISASLSPGLKTWTEGNHVGLGFEGTKERIKKMFDKVELSVSSYDTAWVAMVPSPYSSQAPYFPECVNWLLENQSHDGSWGLPHPHPMLVKDALSSTLASVLALKRWGVGEEQRNKGLWFIASNFASVSDEKQHSPIGFDIIFPGMIEYAKELDLNLPLGQRDVDAMLQKRDLELKGSLGSNTKSREAYLAYISEGMGRLQDWEMVMKYQMKNGSLLNSPSATAAALSHLQNAGCLNYLRSLLEKFGNAVPTVYPLDLYARLCLVDNLERLGIDRYFRMEIRSVLDETYRCWLQREEEIFADRATCAIAFRILRLNGYDISSVPLAQFAEDDQYFKFGQDFKDLGAALELFRASEMIIHPDEVVLEKQNSWSSHFLRQGLSNSSIHADRLNKYIAQEVEDALRFPYYANLDRIANRRSIEHYNVDDTRILKTAYRSSHVCNKDFLKLAVEDFNFCQSIHQNELKQLERWIIENRLDKLKFARQKLAYCYFSAAATIFSPEQSDARLSWAKNSVLTTVVDDFFDIGGSEEELLNLIQLVEKWDIDVAVDCCSEQVEIVFSALHSTISEIGVKASAWQARNVTSHIIDIWLKLLRSMLQEAQWVSNKSAPTMDEYMTNAYVSFALGPIVLPALYFVGPKLSEEVVEGPECHKLYKLMSTCGRLLNDIHSFKRESKEGKANALALHMIHGNGVTTEEQAIREMKGLVKSQRRELQRLVLQEKGSTVPRICKDLFWKMSKVLHTFYEKDDGFTSHDMLRAVKSVIYEPVLLAEF* 827
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 23284513 23291080 - Vvi19g1165 Vvi19g1165 782664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1165 826 Pfam Terpene synthase, N-terminal domain 258 458 IPR001906 GO:0010333|GO:0016829
Vvi19g1165 826 Pfam Terpene synthase family, metal binding domain 501 765 IPR005630 GO:0000287|GO:0010333|GO:0016829
Vvi19g1165 826 Coils Coil 753 773 - -
Vvi19g1165 826 Gene3D - 88 508 IPR036965 GO:0010333|GO:0016829
Vvi19g1165 826 Gene3D Farnesyl Diphosphate Synthase 511 825 IPR008949 -
Vvi19g1165 826 PANTHER ENT-COPALYL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC 89 819 - -
Vvi19g1165 826 SFLD Terpene Cyclase Like 1 N-term 80 492 - -
Vvi19g1165 826 PANTHER ENT-KAUR-16-ENE SYNTHASE, CHLOROPLASTIC 89 819 - -
Vvi19g1165 826 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 268 482 IPR008930 -
Vvi19g1165 826 SFLD Isoprenoid Synthase Type I 497 821 - -
Vvi19g1165 826 Gene3D - 96 299 - -
Vvi19g1165 826 SFLD Terpene Cyclase Like 1 C Terminal Domain 497 821 IPR034741 -
Vvi19g1165 826 CDD Terpene_cyclase_plant_C1 308 820 IPR044814 GO:0010333|GO:0016102
Vvi19g1165 826 SUPERFAMILY Terpenoid synthases 497 821 IPR008949 -
Vvi19g1165 826 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 99 294 IPR008930 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1165 K04121 - vvi:100267397 1642.09