Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1166 ATGGTTTATAGCGGGGCAGTTGATAGAATTATTGGGAGGCCACCACCCAGAACTGGAGATGTCGTGGTGGTAGCTGATGGAACAGAGAAACCAATAGGGTGGGGCTTATACAATTCAGTTTCTATGTTCTGTGTTAGGCTCATGCAACAAGAAGAGGAAGCAACAAGAGACCCGTCTTGTGCATTGAACATGGAGAAACTGCTTGAAACAAGAATCGATGCAGCTATAGAACTACGTAGGAATTTGGGCCTTCCTTCTGCCAATACAAATGCATACCGTCTTGTGAATAGTGAAGGAGACAGGTTGTCAGGACTAATTGTTGATGTCTTTGGAGATTTAGCTGTAATAGCATCATCTGCGGCTTGGGTTGAGAAGTACAAGCCTCAAGTAGAGGCTTGCATTAGTAGAATTGATGAAATTAATCATATAAACTGGAGGCAGTCTGTGGAAATGTTAAAAGAAGAAGGATTGGATTTAACAGATCTGAAGGGAATACATCTGCCTACTTCTCATCAGAGGGTAAAGGTTATTGAAAATGGGATTTCTTATGCAATCTCGCCAGAGGGCCAAAAGACAGGATTTTATGCTGATCAGCGTGAAAACCGTCATTTTATATCAACAATTTCAGAAGGTCAAAGAGTTCTTGACATGTGCTGCTATAGTGGTGGTTTTGCTCTGAATGCAGTATGTGGTGGTGCCGTAAATGTCACTGGGGTTGATACGTCGATGCCTGCTCTGGAGCTTGCCAATGAAAATATCATTCTCAACAACTTGGATCCAGGGAAAATATCATTTTTGAGACGAGATGCCACCGAGTTTATGAAGGATGCTGTTGCTAGGAATGAATCATGGGATATAGTTATTCTGGATCCCCCTAAACTAGCACCTCGACGAAAGGTTCTACAAAGCGCATCCGGCATGTACAGAAATCTAAACTCGTTAGCCATGCAATTGACGAGGAGAGGCGGTCTTCTCATGACTTGTTCTTGCTCAGGAGCAATGACCCAAAGTGGAACATTCATGCGTATTCTTCAGGCAACTGCATCAATGGCTGGAAGGAAAATCACCCTTCTACGGCAGGCAGGAGCAGCTTGTGACCATCCTATTGATCCATCCTACCCAGAAGGGGCATACCTTTCCAACATTCTTTTTAGGGTACTCTGA 1164 43.64 MVYSGAVDRIIGRPPPRTGDVVVVADGTEKPIGWGLYNSVSMFCVRLMQQEEEATRDPSCALNMEKLLETRIDAAIELRRNLGLPSANTNAYRLVNSEGDRLSGLIVDVFGDLAVIASSAAWVEKYKPQVEACISRIDEINHINWRQSVEMLKEEGLDLTDLKGIHLPTSHQRVKVIENGISYAISPEGQKTGFYADQRENRHFISTISEGQRVLDMCCYSGGFALNAVCGGAVNVTGVDTSMPALELANENIILNNLDPGKISFLRRDATEFMKDAVARNESWDIVILDPPKLAPRRKVLQSASGMYRNLNSLAMQLTRRGGLLMTCSCSGAMTQSGTFMRILQATASMAGRKITLLRQAGAACDHPIDPSYPEGAYLSNILFRVL* 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 23305997 23313302 + Vvi19g1166 Vvi19g1166 782665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1166 387 PANTHER RIBOSOMAL RNA LARGE SUBUNIT METHYLTRANSFERASE 1 386 - -
Vvi19g1166 387 Pfam PUA-like domain 2 48 IPR041532 -
Vvi19g1166 387 Gene3D RNA methyltransferase domain (HRMD) like 64 165 - -
Vvi19g1166 387 Gene3D Vaccinia Virus protein VP39 173 387 IPR029063 -
Vvi19g1166 387 CDD RlmI_M_like 67 161 - -
Vvi19g1166 387 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 70 381 IPR029063 -
Vvi19g1166 387 CDD AdoMet_MTases 213 292 - -
Vvi19g1166 387 Pfam S-adenosylmethionine-dependent methyltransferase 171 336 IPR019614 GO:0008168
Vvi19g1166 387 Gene3D PUA domain 1 53 IPR036974 GO:0003723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1166 - - vvi:100262230 761.911