Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1166 ATGGTTTATAGCGGGGCAGTTGATAGAATTATTGGGAGGCCACCACCCAGAACTGGAGATGTCGTGGTGGTAGCTGATGGAACAGAGAAACCAATAGGGTGGGGCTTATACAATTCAGTTTCTATGTTCTGTGTTAGGCTCATGCAACAAGAAGAGGAAGCAACAAGAGACCCGTCTTGTGCATTGAACATGGAGAAACTGCTTGAAACAAGAATCGATGCAGCTATAGAACTACGTAGGAATTTGGGCCTTCCTTCTGCCAATACAAATGCATACCGTCTTGTGAATAGTGAAGGAGACAGGTTGTCAGGACTAATTGTTGATGTCTTTGGAGATTTAGCTGTAATAGCATCATCTGCGGCTTGGGTTGAGAAGTACAAGCCTCAAGTAGAGGCTTGCATTAGTAGAATTGATGAAATTAATCATATAAACTGGAGGCAGTCTGTGGAAATGTTAAAAGAAGAAGGATTGGATTTAACAGATCTGAAGGGAATACATCTGCCTACTTCTCATCAGAGGGTAAAGGTTATTGAAAATGGGATTTCTTATGCAATCTCGCCAGAGGGCCAAAAGACAGGATTTTATGCTGATCAGCGTGAAAACCGTCATTTTATATCAACAATTTCAGAAGGTCAAAGAGTTCTTGACATGTGCTGCTATAGTGGTGGTTTTGCTCTGAATGCAGTATGTGGTGGTGCCGTAAATGTCACTGGGGTTGATACGTCGATGCCTGCTCTGGAGCTTGCCAATGAAAATATCATTCTCAACAACTTGGATCCAGGGAAAATATCATTTTTGAGACGAGATGCCACCGAGTTTATGAAGGATGCTGTTGCTAGGAATGAATCATGGGATATAGTTATTCTGGATCCCCCTAAACTAGCACCTCGACGAAAGGTTCTACAAAGCGCATCCGGCATGTACAGAAATCTAAACTCGTTAGCCATGCAATTGACGAGGAGAGGCGGTCTTCTCATGACTTGTTCTTGCTCAGGAGCAATGACCCAAAGTGGAACATTCATGCGTATTCTTCAGGCAACTGCATCAATGGCTGGAAGGAAAATCACCCTTCTACGGCAGGCAGGAGCAGCTTGTGACCATCCTATTGATCCATCCTACCCAGAAGGGGCATACCTTTCCAACATTCTTTTTAGGGTACTCTGA 1164 43.64 MVYSGAVDRIIGRPPPRTGDVVVVADGTEKPIGWGLYNSVSMFCVRLMQQEEEATRDPSCALNMEKLLETRIDAAIELRRNLGLPSANTNAYRLVNSEGDRLSGLIVDVFGDLAVIASSAAWVEKYKPQVEACISRIDEINHINWRQSVEMLKEEGLDLTDLKGIHLPTSHQRVKVIENGISYAISPEGQKTGFYADQRENRHFISTISEGQRVLDMCCYSGGFALNAVCGGAVNVTGVDTSMPALELANENIILNNLDPGKISFLRRDATEFMKDAVARNESWDIVILDPPKLAPRRKVLQSASGMYRNLNSLAMQLTRRGGLLMTCSCSGAMTQSGTFMRILQATASMAGRKITLLRQAGAACDHPIDPSYPEGAYLSNILFRVL* 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 23305997 23313302 + Vvi19g1166 Vvi19g1166 782665

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1166 387 PANTHER RIBOSOMAL RNA LARGE SUBUNIT METHYLTRANSFERASE 1 386 - -
Vvi19g1166 387 Pfam PUA-like domain 2 48 IPR041532 -
Vvi19g1166 387 Gene3D RNA methyltransferase domain (HRMD) like 64 165 - -
Vvi19g1166 387 Gene3D Vaccinia Virus protein VP39 173 387 IPR029063 -
Vvi19g1166 387 CDD RlmI_M_like 67 161 - -
Vvi19g1166 387 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 70 381 IPR029063 -
Vvi19g1166 387 CDD AdoMet_MTases 213 292 - -
Vvi19g1166 387 Pfam S-adenosylmethionine-dependent methyltransferase 171 336 IPR019614 GO:0008168
Vvi19g1166 387 Gene3D PUA domain 1 53 IPR036974 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1166 - - - vvi:100262230 761.911
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1166 . . . . . . . . . . . . . . . . Cpe16g00706 . . . . . . . Cla02g01830 Cam02g1939 Cec02g1966 Cco02g2005 Clacu02g1919 Cmu02g1868 Cre02g2181 . . . . . . . Cme11g01637 . . . . . . . . . . . . . . . . . Bhi10g00931 . . . . . . . . . . . . . . Csa06g01148 Chy11g01044 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010611 1 3 1 0 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31