Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1168 ATGGCCAAATTCTTATTTGATTATTATTTTCAATACAATTTTCAAAACAGGCCCACACACCTTGCATCATGGCACTATAACAGTGTTATGACTTACGGGTCTCAACTATTGTTTATTGTTTCTGAAGGTTTTTCTCGATTTGGGTTTCATAATTTGCTGCTCATCTGCCATTTTTATAGGCAGAATTTCTTGATTCAGATAAGCATGGATCCACAAAGTGCTATAGCTCAAGTTAAGAGGGCTGGTCTTTTTCGGACCCAGGGCCTTATTGGAGGAAAATGGATGGATGCTTATGATGGGAAGACTTTTGAGGTCTACAATCCCGCAACCGGTGAAGTTCTAGCTAATGTCGCGTGCATGGGTAAGAAGGAGGCCAATGATGCGATAGCTTCAGCTCATGCTGCATTCACTTCTTGGAGCAAACTTACTACTGCTGAAAGGAGTAAACTTATGAGGAAATGGTACGATTTACTAATTGCCCATCAAACCGAGCTTGGTCAACTTATAACACTGGAGCAAGGAAAACCTGTAGCGGAAGGCTATAATGAGGTCTTGATTGGGGCTAGTTGTTTGGAGTTCTTTCTTGAGGAAGTGAAGCATTGTTATGGTGATATAATTCCACAAACACAAGCAGATCGCCGAATGTTTGTTTTAAAGCAGCCTGTAGGTGTTGTTGGTGCAATTACTCCCTGGAACCTTCCATTGGCTATGGCTCTTCGGAAGGTTAGTCCTGCCATGGCTTGTGGCTGCACAGTGGTTATAAAGCCCTCTGAATTAACTCCATTGTCAGCCTTAGCAGTAGCTGAACTTGCTCTTCAAGCTGGAATTCCACCGGGTGTTTTCAACATGGTCATGGGATTTGCCCCTGAGATTGGGGATGCCTTCCTTGCAAGTCCAAAGGTTAGGGCGATCACTTTTACGGGCTCAACAGCTGTTGGGAAGATGTTGCTGGCTGGTGCTGCTCAGACTGTTAAAAAGACATCTATGGAACTTGGCGGTAATGCACCTAGCATGATATTTGATGATGCAGACTTGGAGGTGACCGTGAAAGGACTTATGATTGTGAAATTCTTTAATTGTGGACAAACATGTATTTCTCCGAATAGAATATTGGTACAAGAAGGTATTCACGATAAATTTGCAGCTGCCCTTACAAAAGCTGTCCAGACTCTGCGAGTTGGGCATGGCTTTGATGAAGGTGTGACCCAGGGCCCACTGATTAATCAAGCTGCATTGCACAAGATTGAGGCATTGGTTGAAGATGCTGTCTCACAGGGGGCAAAAGTCCTCGTTGGGGGTAAAAGACACAGTTTGGGATTGACTTTTTATGAGCCCACAGTACTTGTCGATGTCACTAGTGATATGCTTATATCAAGTACCGAAATATTTGGACCTGTTCTAGCCCTGCAGCGATTTAAGACTGAGGAGGAAGCTATCCACCTTGCAAATGACAGTAATGCAGGTTTAGCAGGCTACATTTACACAGAGAACTTGCGTCGCTGTTGGCGTGTCGCTGAAGCTATCGAATTTGGAATTGTTGGTGTCAATGATGGATTAATTCCAGCAGCGAGTGCTCCATTTGGTGGGTTTAAGCAGTCTGGTCTTGGACGTGAAGGATCCAAGTATGGGTTGGATGATTTTCTAGAAATCAAATATCTGTGCTTGGGAAATATGGTGTAA 1680 43.69 MAKFLFDYYFQYNFQNRPTHLASWHYNSVMTYGSQLLFIVSEGFSRFGFHNLLLICHFYRQNFLIQISMDPQSAIAQVKRAGLFRTQGLIGGKWMDAYDGKTFEVYNPATGEVLANVACMGKKEANDAIASAHAAFTSWSKLTTAERSKLMRKWYDLLIAHQTELGQLITLEQGKPVAEGYNEVLIGASCLEFFLEEVKHCYGDIIPQTQADRRMFVLKQPVGVVGAITPWNLPLAMALRKVSPAMACGCTVVIKPSELTPLSALAVAELALQAGIPPGVFNMVMGFAPEIGDAFLASPKVRAITFTGSTAVGKMLLAGAAQTVKKTSMELGGNAPSMIFDDADLEVTVKGLMIVKFFNCGQTCISPNRILVQEGIHDKFAAALTKAVQTLRVGHGFDEGVTQGPLINQAALHKIEALVEDAVSQGAKVLVGGKRHSLGLTFYEPTVLVDVTSDMLISSTEIFGPVLALQRFKTEEEAIHLANDSNAGLAGYIYTENLRRCWRVAEAIEFGIVGVNDGLIPAASAPFGGFKQSGLGREGSKYGLDDFLEIKYLCLGNMV* 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 23319002 23339683 + Vvi19g1168 Vvi19g1168 782667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1168 559 CDD ALDH_F5_SSADH_GabD 105 555 - -
Vvi19g1168 559 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 81 558 - -
Vvi19g1168 559 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 81 558 - -
Vvi19g1168 559 Pfam Aldehyde dehydrogenase family 94 552 IPR015590 GO:0016491
Vvi19g1168 559 SUPERFAMILY ALDH-like 83 556 IPR016161 GO:0016491
Vvi19g1168 559 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 329 336 IPR029510 GO:0016491
Vvi19g1168 559 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 333 522 IPR016163 GO:0016620
Vvi19g1168 559 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 100 547 IPR016162 GO:0016491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1168 K17761 - vvi:100257122 1052.35