Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1170 ATGGGTCTGTTGCGGAGCAGCTGCTCAGCGCTGTGTCACGGCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTACTTCGGAGCCAGTGCCTTATTGGAGGAAAATGGACTGAAGCTTATGATGGGAAGACCATACCGGTCCACAACCCTGCTACTGGTGATGTTTTAGTAAATGTTCCATGCATGGGAGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATGGTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTATATATGGTGATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATGATCACACGGAAGGTTGGTCCTGCCCTTGCTTGTGGCTGCACAGTGGTTATAAAACCTTCTGAACTTACACCATTGACAGCCTTAGCAGCAGCTGAGCTTGCCCTTCAAGCTGGAATACCACCGGGTGCTGTGAATGTGGTCTTTGGAAATGCTCCTGAAATTGGGGATGCTTTACTTGCAAGTCGGCAGGTAAGGAAGATCACATTTACAGGCTCAACAGCTGTCGGAAAGAAGTTGATGGCTGGTGCAGCTCAGACTGTTAAAAAGGTATCTCTGGAACTTGGTGGTAATGCACCTTGCATAATCTTTGACGATGCAGACCTGGAGGTGGCAGTAAAAGGGGCTCTTGGTACAAAGTTCCGTAACAGTGGACAAACATGTGTTTGTGCAAATAGAATACTTGTGCAGGAAGGTATTTATGAGAAATTTGCAATTGCTTTTTCACAAGCTGTCCAAAGTATGCAAGTTGGTGAAGGTTTTACTGAAGGTGTGGTCCAGGGTCCACTGATTAATGAGGCTGCAGTGCAGAAGGTTGAATCATTTGTTAAAGATGCTGTCTCAAAGGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTCTATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGAGGAATGAAGTGTTTGGACCTGTTGCACCCCTCTTGCGCTTTAAAACCGAGGAGGAAGCTATCCGCATTGCAAATGACACCAATGCTGGTTTAGCTGCTTATGTATTCACTGAAAACGTGCAACGTATGTGGCGTGTCACTGAAGCCCTTGAATATGGACTGGTTGGTGTCAATGAAGGATTGGTTTCAACAGAGGTGGCTCCATTTGGAGGAGTCAAGGAGTCTGGTCTTGGTAGGGAAGGTTCCAAATATGGGATGGATGAATTTCTGGAAATGAAATATGTGTGCTTCGGAAATATAAGCAGTAACTGA 1578 46.13 MGLLRSSCSALCHGPRTASVLRPSAVLTRQISMDTQNLVARLNSSGLLRSQCLIGGKWTEAYDGKTIPVHNPATGDVLVNVPCMGGQETNDAISVAYEAFLSWSKLTAAERSKRLRKWYDLLIANKEELGQIITLEQGKPLKEAIGEVNYGAAFIEFSAEEAKRIYGDIIPSPLADRRLLVLKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELALQAGIPPGAVNVVFGNAPEIGDALLASRQVRKITFTGSTAVGKKLMAGAAQTVKKVSLELGGNAPCIIFDDADLEVAVKGALGTKFRNSGQTCVCANRILVQEGIYEKFAIAFSQAVQSMQVGEGFTEGVVQGPLINEAAVQKVESFVKDAVSKGAKVLLGGKRHSLGMTFYEPTVIGDIKNDMLIARNEVFGPVAPLLRFKTEEEAIRIANDTNAGLAAYVFTENVQRMWRVTEALEYGLVGVNEGLVSTEVAPFGGVKESGLGREGSKYGMDEFLEMKYVCFGNISSN* 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 23353907 23383396 + Vvi19g1170 Vvi19g1170 782669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1170 525 CDD ALDH_F5_SSADH_GabD 69 519 - -
Vvi19g1170 525 TIGRFAM SSADH: succinate-semialdehyde dehydrogenase 69 515 IPR010102 GO:0009013|GO:0009450
Vvi19g1170 525 Pfam Aldehyde dehydrogenase family 58 517 IPR015590 GO:0016491
Vvi19g1170 525 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 45 521 - -
Vvi19g1170 525 SUPERFAMILY ALDH-like 46 521 IPR016161 GO:0016491
Vvi19g1170 525 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 293 300 IPR029510 GO:0016491
Vvi19g1170 525 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 45 521 - -
Vvi19g1170 525 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 297 486 IPR016163 GO:0016620
Vvi19g1170 525 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 321 332 IPR016160 GO:0016491
Vvi19g1170 525 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 64 511 IPR016162 GO:0016491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1170 K17761 - vvi:100262240 1014.99